Wringing out DNA

Physical Review Letters

Volumn 96, Issue 17, 2006, Pages

  Lionnet, Timothée ^a   Joubaud, Sylvain ^b   Lavery, Richard ^c   Bensimon, David ^a   Croquette, Vincent ^a  

^a ECOLE NORMALE SUPÉRIEURE   (France)

^b UNIVERSITÉ DE LYON   (France)

^c INST DE BIOLOGIE PHYSICO CHIMIQUE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

CELL CULTURE; MAGNETIC COUPLINGS; MAGNETIC DEVICES; MOLECULES; NUMERICAL ANALYSIS; TORSIONAL STRESS;

CHIRAL NATURE; MAGNETIC TWEEZERS; OVERWINDING; TORSIONALLY RESTRAINED DNA;

DNA;

DNA; DNA SUPERCOILING;

BASE PAIRING; CHEMISTRY; CONFORMATION; DNA SUPERCOILING; ELASTICITY; ENTROPY; MECHANICAL STRESS;

BASE PAIRING; DNA; DNA, SUPERHELICAL; ELASTICITY; ENTROPY; NUCLEIC ACID CONFORMATION; STRESS, MECHANICAL;

EID: 33646434827     PISSN: 00319007     EISSN: 10797114     Source Type: Journal    
DOI: 10.1103/PhysRevLett.96.178102     Document Type: Article

References (35)

1. R. Lavery, J. Phys. Condens. Matter JCOMEL 0953-8984 14, R383 (2002); 10.1088/0953-8984/14/14/202
2. G. Charvin, Contemp. Phys. 45, 383 (2004). CTPHAF 0010-7514 10.1080/00107510410001697279
3. S.B. Smith, L. Finzi, and C. Bustamante, Science 258, 1122 (1992); SCIEAS 0036-8075
4. C. Bustamante, J.F. Marko, E.D. Siggia, and S. Smith, Science 265, 1599 (1994); SCIEAS 0036-8075
5. J.F. Marko and E.D. Siggia, Macromolecules 28, 8759 (1995); MAMOBX 0024-9297 10.1021/ma00130a008
6. C. Bouchiat, Biophys. J. 76, 409 (1999). BIOJAU 0006-3495
7. T.R. Strick, J.F. Allemand, D. Bensimon, A. Bensimon, and V. Croquette, Science 271, 1835 (1996). SCIEAS 0036-8075
8. C. Bouchiat and M. Mezard, Phys. Rev. Lett. 80, 1556 (1998); PRLTAO 0031-9007 10.1103/PhysRevLett.80.1556
9. A.V. Vologodskii and J.F. Marko, Biophys. J. 73, 123 (1997); BIOJAU 0006-3495
10. H.J. Zhou, Y. Zhang, and Z.C. Ou-Yang, Phys. Rev. E 62, 1045 (2000). PLEEE8 1063-651X 10.1103/PhysRevE.62.1045
11. J.D. Moroz and P. Nelson, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 94, 14418 (1997). 10.1073/pnas.94.26.14418
12. T.R. Strick, V. Croquette, and D. Bensimon, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 95, 10579 (1998). 10.1073/pnas.95.18.10579
13. T.R. Strick, J.F. Allemand, D. Bensimon, and V. Croquette, Biophys. J. 74, 2016 (1998). BIOJAU 0006-3495
14. J.F. Allemand, D. Bensimon, R. Lavery, and V. Croquette, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 95, 14152 (1998). 10.1073/pnas.95.24.14152
15. Z. Bryant, Nature (London) NATUAS 0028-0836 424, 338 (2003). 10.1038/nature01810
16. J.F. Marko, Europhys. Lett. 38, 183 (1997); EULEEJ 0295-5075 10.1209/epl/i1997-00223-5
17. R.D. Kamien, T.C. Lubensky, P. Nelson, and C.S. Ohern, Europhys. Lett. 38, 237 (1997). EULEEJ 0295-5075 10.1209/epl/i1997-00231-y
18. C.S. O'Hern, R.D. Kamien, T.C. Lubensky, and P. Nelson, Eur. Phys. J. B 1, 95 (1998). EPJBFY 1434-6028 10.1007/s100510050156
19. A. Sarkar, J.F. Léger, D. Chatenay, and J.F. Marko, Phys. Rev. E 63 051903 (2001). PLEEE8 1063-651X 10.1103/PhysRevE.63.051903
20. B. Mergell, M.R. Ejtehadi, and R. Everaers, Phys. Rev. E 68 021911 (2003). PLEEE8 1063-651X 10.1103/PhysRevE.68.021911
21. F. Lankas, J. Sponer, P. Hobza, and J. Langowski, J. Mol. Biol. 299, 695 (2000). JMOBAK 0022-2836 10.1006/jmbi.2000.3781
22. W. Saenger, Principles of Nucleic Acid Structure (Springer-Verlag, New York, 1984).
23. C. Gosse and V. Croquette, Biophys. J. 82, 3314 (2002). BIOJAU 0006-3495
24. R. Lavery, K. Zakrzewska, and H. Sklenar, Comput. Phys. Commun. CPHCBZ 0010-4655 91, 135 (1995). 10.1016/0010-4655(95)00046-I
25. T.E. Cheatham, P. Cieplak, and P.A. Kollman, J. Biomol. Struct. Dyn. 16, 845 (1999). JBSDD6 0739-1102
26. V. Tsui and D.A. Case, J. Am. Chem. Soc. 122, 2489 (2000). JACSAT 0002-7863 10.1021/ja9939385
27. I. Lafontaine and R. Lavery, Biophys. J. 79, 680 (2000). BIOJAU 0006-3495
28. R. Lavery and A. Lebrun, Genetica (The Hague) GENEA3 0016-6707 106, 75 (1999). 10.1023/A:1003776827836
29. R.E. Dickerson, Nucleic Acids Res. 17, 1797 (1989). NARHAD 0305-1048
30. See EPAPS Document No. E-PRLTAO-96-015620 for supplementary discussion and animated structures. For more information on EPAPS, see http://www.aip.org/pubservs/epaps.html.
31. S.B. Smith, Y. Cui, and C. Bustamante, Science 271, 795 (1996); SCIEAS 0036-8075
32. P. Cluzel, Science 271, 792 (1996). SCIEAS 0036-8075
33. J. Gore, Z. Bryant, M. Nöllmann, M.U. Le, N.R. Cozzarelli, and C. Bustamante (to be published).
34. F. Lankas, J. Sponer, J. Langowski, and T.E. Cheatham, Biophys. J. 85, 2872 (2003). BIOJAU 0006-3495
35. G. Paillard and R. Lavery, Structure 12, 113 (2004). STRUE6 0969-2126 10.1016/j.str.2003.11.022