Promoter unwinding and promoter clearance by RNA polymerase: Detection by single-molecule DNA nanomanipulation

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 14, 2004, Pages 4776-4780

  Revyakin, Andrey ^a,b   Ebright, Richard H ^a   Strick, Terence R ^b  

^a RUTGERS UNIVERSITY   (United States)

^b Howard Hughes Medical Institute Cold Spring Harbor Laboratory Cold Spring Harbor   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT; DNA POLYMERASE; NANOPARTICLE; NUCLEOTIDE; RNA POLYMERASE;

ARTICLE; ESCHERICHIA COLI; GENE AMPLIFICATION; GEOMETRY; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN FUNCTION; QUANTITATIVE ANALYSIS; SEQUENCE ANALYSIS; SIGNAL TRANSDUCTION; TRANSCRIPTION REGULATION;

DNA; DNA-DIRECTED RNA POLYMERASES; NANOTECHNOLOGY; PROMOTER REGIONS (GENETICS);

ESCHERICHIA COLI;

EID: 1842788676     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0307241101     Document Type: Article

References (26)

1. Record, M. T. J., Reznikoff, W., Craig, M., McQuade, K. & Schlax, P. (1996) in Escherichia coli and Salmonella, ed. Neidhart, F. C. (Am. Soc. Microbiol. Press, Washington, DC), Vol. 1, pp. 792-820.
2. deHaseth, P., Zupancic, M. & Record, M. T. J. (1998) J. Bacteriol. 180, 3019-3025.
3. Strick, T., Allemand, J., Bensimon, D., Bensimon, A. & Croquette, V. (1996) Science 271, 1835-1837.
4. Strick, T., Allemand, J.-F., Bensimon, D. & Croquette, V. (1998) Biophys. J. 74, 2016-2028.
5. Revyakin, A., Allemand, J.-F., Croquette, V., Ebright, R. & Strick, T. (2003) Methods Enzymol. 370, 577-598.
6. White, J. (1969) J. Math. 91, 693-728.
7. Mukhopadhyay, J., Kapanidis, A., Mekler, V., Kortkhonjia, E., Ebright, Y. & Ebright, R. (2001) Cell 106, 453-463.
8. Mekler, V., Kortkhonjia, E., Mukhopadhyay, J., Knight, J., Revyakin, A., Kapanidis, A., Niu, W., Ebright, Y., Levy, R. & Ebright, R. (2002) Cell 108, 599-614.
9. Cech, C. & McClure, W. (1980) Biochemistry 19, 2440-2447.
10. Zaychikov, E., Denissova, L., Meier, T., Gotte, M. & Heumann, H. (1997) J. Biol. Chem. 272, 2259-2267.
11. Rivetti, C., Guthold, M. & Bustamante, C. (1999) EMBO J. 18, 4464-4475.
12. Naryshkin, N., Revyakin, A., Kim, Y., Mekler, V. & Ebright, R. (2000) Cell 101, 601-611.
13. McClure, W. (1980) Proc. Natl. Acad. Sci. USA 77, 5634-5638.
14. Malan, T. P., Kolb, A., Buc, H. & McClure, W. (1984) J. Mol. Biol. 180, 881-909.
15. Amouyal, M. & Buc, H. (1987) J. Mol. Biol. 195, 795-808.
16. Borowiec, J. & Gralla, J. D. (1987) J. Mol. Biol. 195, 89-97.
17. Su, T. T. & McClure, W. R. (1994) J. Biol. Chem. 269, 13511-13521.
18. Strick, T., Allemand, J.-F., Bensimon, D. & Croquette, V. (2000) Annu. Rev. Biophys. Biomol. Struct. 29, 523-543.
19. ten Heggeler-Bordier, B., Wahli, W., Adrian, M., Stasiak, A. & Dubochet, J. (1992) EMBO J. 11, 667-672.
20. Lavigne, M., Kolb, A., Yeramian, E. & Buc, H. (1994) EMBO J. 13, 4983-4990.
21. Strick, T., Bensimon, D. & Croquette, V. (1999) Genetica 106, 57-62.
22. Kanaar, R. & Cozzarelli, N. (1992) Curr. Opin. Struct. Biol. 2, 369-379.
23. Gourse, R. (1988) Nucleic Acids Res. 16, 9789-9809.
24. Barker, M., Gaal, T., Josaitis, C. & Gourse, R. (2001)J. Mol. Biol. 305, 673-688.
25. Gaal, T., Bartlett, M., Ross, W., Turnbough, C. & Gourse, R. (1997) Science 278, 2092-2097.
26. Rief, M., Fernandez, J. & Gaub, H. (1998) Phys. Rev. Lett. 81, 4765-4767.