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Volumn 41, Issue 9, 2013, Pages

Harnessing mutagenic homologous recombination for targeted mutagenesis in vivo by TaGTEAM

Author keywords

[No Author keywords available]

Indexed keywords

DNA DIRECTED DNA POLYMERASE; DNA DIRECTED DNA POLYMERASE ZETA; DNA GLYCOSYLASE MAG1; DNA GLYCOSYLTRANSFERASE; ENDONUCLEASE; UNCLASSIFIED DRUG;

EID: 84877280637     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkt150     Document Type: Article
Times cited : (41)

References (51)
  • 2
    • 32344438754 scopus 로고    scopus 로고
    • Directed evolution of adeno-associated virus yields enhanced gene delivery vectors
    • Maheshri, N., Koerber, J.T., Kaspar, B.K. and Schaffer, D.V. (2006) Directed evolution of adeno-associated virus yields enhanced gene delivery vectors. Nat. Biotechnol., 24, 198-204.
    • (2006) Nat. Biotechnol. , vol.24 , pp. 198-204
    • Maheshri, N.1    Koerber, J.T.2    Kaspar, B.K.3    Schaffer, D.V.4
  • 3
    • 33847073370 scopus 로고    scopus 로고
    • Expanding the metabolic engineering toolbox: More options to engineer cells
    • Tyo, K.E., Alper, H.S. and Stephanopoulos, G.N. (2007) Expanding the metabolic engineering toolbox: more options to engineer cells. Trends Biotechnol., 25, 132-137.
    • (2007) Trends Biotechnol. , vol.25 , pp. 132-137
    • Tyo, K.E.1    Alper, H.S.2    Stephanopoulos, G.N.3
  • 4
    • 33747078696 scopus 로고    scopus 로고
    • Combinatorial engineering of intergenic regions in operons tunes expression of multiple genes
    • Pfleger, B.F., Pitera, D.J., Smolke, C.D. and Keasling, J.D. (2006) Combinatorial engineering of intergenic regions in operons tunes expression of multiple genes. Nat. Biotechnol., 24, 1027-1032.
    • (2006) Nat. Biotechnol. , vol.24 , pp. 1027-1032
    • Pfleger, B.F.1    Pitera, D.J.2    Smolke, C.D.3    Keasling, J.D.4
  • 6
    • 0031965086 scopus 로고    scopus 로고
    • The sequence of spacers between the consensus sequences modulates the strength of prokaryotic promoters
    • Jensen, P.R. and Hammer, K. (1998) The sequence of spacers between the consensus sequences modulates the strength of prokaryotic promoters. Appl. Environ. Microbiol., 64, 82-87.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 82-87
    • Jensen, P.R.1    Hammer, K.2
  • 7
    • 68949161807 scopus 로고    scopus 로고
    • Programming cells by multiplex genome engineering and accelerated evolution
    • Wang, H.H., Isaacs, F.J., Carr, P.A., Sun, Z.Z., Xu, G., Forest, C.R. and Church, G.M. (2009) Programming cells by multiplex genome engineering and accelerated evolution. Nature, 460, 894-898.
    • (2009) Nature , vol.460 , pp. 894-898
    • Wang, H.H.1    Isaacs, F.J.2    Carr, P.A.3    Sun, Z.Z.4    Xu, G.5    Forest, C.R.6    Church, G.M.7
  • 8
    • 20144364226 scopus 로고    scopus 로고
    • Identification and use of zinc finger transcription factors that increase production of recombinant proteins in yeast and mammalian cells
    • Park, K.S., Seol, W., Yang, H.Y., Lee, S.I., Kim, S.K., Kwon, R.J., Kim, E.J., Roh, Y.H., Seong, B.L. and Kim, J.S. (2005) Identification and use of zinc finger transcription factors that increase production of recombinant proteins in yeast and mammalian cells. Biotechnol. Prog., 21, 664-670.
    • (2005) Biotechnol. Prog. , vol.21 , pp. 664-670
    • Park, K.S.1    Seol, W.2    Yang, H.Y.3    Lee, S.I.4    Kim, S.K.5    Kwon, R.J.6    Kim, E.J.7    Roh, Y.H.8    Seong, B.L.9    Kim, J.S.10
  • 9
    • 33845442201 scopus 로고    scopus 로고
    • Engineering yeast transcription machinery for improved ethanol tolerance and production
    • Alper, H., Moxley, J., Nevoigt, E., Fink, G.R. and Stephanopoulos, G. (2006) Engineering yeast transcription machinery for improved ethanol tolerance and production. Science, 314, 1565-1568.
    • (2006) Science , vol.314 , pp. 1565-1568
    • Alper, H.1    Moxley, J.2    Nevoigt, E.3    Fink, G.R.4    Stephanopoulos, G.5
  • 10
    • 43049136820 scopus 로고    scopus 로고
    • Combinatorial engineering of microbes for optimizing cellular phenotype
    • Santos, C.N. and Stephanopoulos, G. (2008) Combinatorial engineering of microbes for optimizing cellular phenotype. Curr. Opin. Chem. Biol., 12, 168-176.
    • (2008) Curr. Opin. Chem. Biol. , vol.12 , pp. 168-176
    • Santos, C.N.1    Stephanopoulos, G.2
  • 11
    • 79955534060 scopus 로고    scopus 로고
    • A system for the continuous directed evolution of biomolecules
    • Esvelt, K.M., Carlson, J.C. and Liu, D.R. (2011) A system for the continuous directed evolution of biomolecules. Nature, 472, 499-503.
    • (2011) Nature , vol.472 , pp. 499-503
    • Esvelt, K.M.1    Carlson, J.C.2    Liu, D.R.3
  • 12
    • 2442475398 scopus 로고    scopus 로고
    • Viral evolution as a tool to improve the tetracycline-regulated gene expression system
    • Das, A.T., Zhou, X., Vink, M., Klaver, B., Verhoef, K., Marzio, G. and Berkhout, B. (2004) Viral evolution as a tool to improve the tetracycline-regulated gene expression system. J. Biol. Chem., 279, 18776-18782.
    • (2004) J. Biol. Chem. , vol.279 , pp. 18776-18782
    • Das, A.T.1    Zhou, X.2    Vink, M.3    Klaver, B.4    Verhoef, K.5    Marzio, G.6    Berkhout, B.7
  • 13
    • 73949125700 scopus 로고    scopus 로고
    • Viral mutagenesis as a means for generating novel proteins
    • Davis, J.N. and van den Pol, A.N. (2010) Viral mutagenesis as a means for generating novel proteins. J. Virol., 84, 1625-1630.
    • (2010) J. Virol. , vol.84 , pp. 1625-1630
    • Davis, J.N.1    Van Den Pol, A.N.2
  • 14
    • 12744259733 scopus 로고    scopus 로고
    • Activation-induced deaminase: Controversies and open questions
    • Barreto, V.M., Ramiro, A.R. and Nussenzweig, M.C. (2005) Activation-induced deaminase: controversies and open questions. Trends Immunol., 26, 90-96.
    • (2005) Trends Immunol. , vol.26 , pp. 90-96
    • Barreto, V.M.1    Ramiro, A.R.2    Nussenzweig, M.C.3
  • 15
    • 18044368933 scopus 로고    scopus 로고
    • Directed molecular evolution by somatic hypermutation
    • Wang, C.L., Yang, D.C. and Wabl, M. (2004) Directed molecular evolution by somatic hypermutation. Protein Eng. Des. Sel., 17, 659-664.
    • (2004) Protein Eng. Des. Sel. , vol.17 , pp. 659-664
    • Wang, C.L.1    Yang, D.C.2    Wabl, M.3
  • 16
    • 10044227172 scopus 로고    scopus 로고
    • Evolution of new nonantibody proteins via iterative somatic hypermutation
    • Wang, L., Jackson, W.C., Steinbach, P.A. and Tsien, R.Y. (2004) Evolution of new nonantibody proteins via iterative somatic hypermutation. Proc. Natl Acad. Sci. USA, 101, 16745-16749.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 16745-16749
    • Wang, L.1    Jackson, W.C.2    Steinbach, P.A.3    Tsien, R.Y.4
  • 18
    • 0043194096 scopus 로고    scopus 로고
    • Targeted gene evolution in escherichia coli using a highly error-prone DNA polymerase i
    • Camps, M., Naukkarinen, J., Johnson, B.P. and Loeb, L.A. (2003) Targeted gene evolution in escherichia coli using a highly error-prone DNA polymerase I. Proc. Natl Acad. Sci. USA, 100, 9727-9732.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 9727-9732
    • Camps, M.1    Naukkarinen, J.2    Johnson, B.P.3    Loeb, L.A.4
  • 19
    • 0036021389 scopus 로고    scopus 로고
    • Targeted chromosomal cleavage and mutagenesis in drosophila using zinc-finger nucleases
    • Bibikova, M., Golic, M., Golic, K.G. and Carroll, D. (2002) Targeted chromosomal cleavage and mutagenesis in drosophila using zinc-finger nucleases. Genetics, 161, 1169-1175.
    • (2002) Genetics , vol.161 , pp. 1169-1175
    • Bibikova, M.1    Golic, M.2    Golic, K.G.3    Carroll, D.4
  • 20
    • 13844319542 scopus 로고    scopus 로고
    • Targeted mutagenesis using zinc-finger nucleases in arabidopsis
    • Lloyd, A., Plaisier, C.L., Carroll, D. and Drews, G.N. (2005) Targeted mutagenesis using zinc-finger nucleases in arabidopsis. Proc. Natl Acad. Sci. USA, 102, 2232-2237.
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 2232-2237
    • Lloyd, A.1    Plaisier, C.L.2    Carroll, D.3    Drews, G.N.4
  • 21
    • 33745211644 scopus 로고    scopus 로고
    • Methods for determining spontaneous mutation rates
    • Foster, P.L. (2006) Methods for determining spontaneous mutation rates. Methods Enzymol., 409, 195-213.
    • (2006) Methods Enzymol. , vol.409 , pp. 195-213
    • Foster, P.L.1
  • 22
    • 40849138236 scopus 로고    scopus 로고
    • Estimating the per-base-pair mutation rate in the yeast saccharomyces cerevisiae
    • Lang, G.I. and Murray, A.W. (2008) Estimating the per-base-pair mutation rate in the yeast saccharomyces cerevisiae. Genetics, 178, 67-82.
    • (2008) Genetics , vol.178 , pp. 67-82
    • Lang, G.I.1    Murray, A.W.2
  • 23
    • 0026470403 scopus 로고
    • On fluctuation analysis: A new, simple and efficient method for computing the expected number of mutants
    • Sarkar, S., Ma, W.T. and Sandri, G.H. (1992) On fluctuation analysis: a new, simple and efficient method for computing the expected number of mutants. Genetica, 85, 173-179.
    • (1992) Genetica , vol.85 , pp. 173-179
    • Sarkar, S.1    Ma, W.T.2    Sandri, G.H.3
  • 24
    • 0027968460 scopus 로고
    • Fluctuation tests: How reliable are the estimates of mutation rates?
    • Stewart, F.M. (1994) Fluctuation tests: how reliable are the estimates of mutation rates? Genetics, 137, 1139-1146.
    • (1994) Genetics , vol.137 , pp. 1139-1146
    • Stewart, F.M.1
  • 25
    • 0035902544 scopus 로고    scopus 로고
    • Rad52 forms DNA repair and recombination centers during S phase
    • Lisby, M., Rothstein, R. and Mortensen, U.H. (2001) Rad52 forms DNA repair and recombination centers during S phase. Proc. Natl Acad. Sci. USA, 98, 8276-8282.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 8276-8282
    • Lisby, M.1    Rothstein, R.2    Mortensen, U.H.3
  • 26
    • 0348140585 scopus 로고    scopus 로고
    • Abasic sites in DNA: Repair and biological consequences in saccharomyces cerevisiae
    • Boiteux, S. and Guillet, M. (2004) Abasic sites in DNA: repair and biological consequences in saccharomyces cerevisiae. DNA Repair (Amst), 3, 1-12.
    • (2004) DNA Repair (Amst) , vol.3 , pp. 1-12
    • Boiteux, S.1    Guillet, M.2
  • 27
    • 0029100516 scopus 로고
    • Novel mutagenic properties of abasic sites in saccharomyces cerevisiae
    • Gibbs, P.E. and Lawrence, C.W. (1995) Novel mutagenic properties of abasic sites in saccharomyces cerevisiae. J. Mol. Biol., 251, 229-236.
    • (1995) J. Mol. Biol. , vol.251 , pp. 229-236
    • Gibbs, P.E.1    Lawrence, C.W.2
  • 28
    • 1642411206 scopus 로고    scopus 로고
    • Dissecting the broad substrate specificity of human 3-methyladenine-DNA glycosylase
    • O'Brien, P.J. and Ellenberger, T. (2004) Dissecting the broad substrate specificity of human 3-methyladenine-DNA glycosylase. J. Biol. Chem., 279, 9750-9757.
    • (2004) J. Biol. Chem. , vol.279 , pp. 9750-9757
    • O'Brien, P.J.1    Ellenberger, T.2
  • 31
    • 34547925618 scopus 로고    scopus 로고
    • Combinatorial promoter design for engineering noisy gene expression
    • Murphy, K.F., Balazsi, G. and Collins, J.J. (2007) Combinatorial promoter design for engineering noisy gene expression. Proc. Natl Acad. Sci. USA, 104, 12726-12731.
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 12726-12731
    • Murphy, K.F.1    Balazsi, G.2    Collins, J.J.3
  • 32
    • 0030035663 scopus 로고    scopus 로고
    • Excision of cytosine and thymine from DNA by mutants of human uracil-DNA glycosylase
    • Kavli, B., Slupphaug, G., Mol, C.D., Arvai, A.S., Peterson, S.B., Tainer, J.A. and Krokan, H.E. (1996) Excision of cytosine and thymine from DNA by mutants of human uracil-DNA glycosylase. EMBO J., 15, 3442-3447.
    • (1996) EMBO J. , vol.15 , pp. 3442-3447
    • Kavli, B.1    Slupphaug, G.2    Mol, C.D.3    Arvai, A.S.4    Peterson, S.B.5    Tainer, J.A.6    Krokan, H.E.7
  • 33
    • 44849085110 scopus 로고    scopus 로고
    • A microfluidic device for temporally controlled gene expression and long-term fluorescent imaging in unperturbed dividing yeast cells
    • Charvin, G., Cross, F.R. and Siggia, E.D. (2008) A microfluidic device for temporally controlled gene expression and long-term fluorescent imaging in unperturbed dividing yeast cells. PLoS One, 3, e1468.
    • (2008) PLoS One , vol.3
    • Charvin, G.1    Cross, F.R.2    Siggia, E.D.3
  • 34
    • 79956197636 scopus 로고    scopus 로고
    • Delayed repair of radiation induced clustered DNA damage: Friend or foe?
    • Eccles, L.J., O'Neill, P. and Lomax, M.E. (2011) Delayed repair of radiation induced clustered DNA damage: Friend or foe? Mutat. Res., 11, 134-141.
    • (2011) Mutat. Res. , vol.11 , pp. 134-141
    • Eccles, L.J.1    O'Neill, P.2    Lomax, M.E.3
  • 35
    • 0030700468 scopus 로고    scopus 로고
    • A role for REV3 in mutagenesis during double-strand break repair in saccharomyces cerevisiae
    • Holbeck, S.L. and Strathern, J.N. (1997) A role for REV3 in mutagenesis during double-strand break repair in saccharomyces cerevisiae. Genetics, 147, 1017-1024.
    • (1997) Genetics , vol.147 , pp. 1017-1024
    • Holbeck, S.L.1    Strathern, J.N.2
  • 36
    • 0036861699 scopus 로고    scopus 로고
    • The roles of REV3 and RAD57 in double-strand-break-repair-induced mutagenesis of Saccharomyces cerevisiae
    • Rattray, A.J., Shafer, B.K., McGill, C.B. and Strathern, J.N. (2002) The roles of REV3 and RAD57 in double-strand-break-repair-induced mutagenesis of Saccharomyces cerevisiae. Genetics, 162, 1063-1077.
    • (2002) Genetics , vol.162 , pp. 1063-1077
    • Rattray, A.J.1    Shafer, B.K.2    McGill, C.B.3    Strathern, J.N.4
  • 37
    • 57149094856 scopus 로고    scopus 로고
    • Hypermutability of damaged single-strand DNA formed at double-strand breaks and uncapped telomeres in yeast Saccharomyces cerevisiae
    • Yang, Y., Sterling, J., Storici, F., Resnick, M.A. and Gordenin, D.A. (2008) Hypermutability of damaged single-strand DNA formed at double-strand breaks and uncapped telomeres in yeast Saccharomyces cerevisiae. PLoS Genet., 4, e1000264.
    • (2008) PLoS Genet. , vol.4
    • Yang, Y.1    Sterling, J.2    Storici, F.3    Resnick, M.A.4    Gordenin, D.A.5
  • 38
    • 77955274581 scopus 로고    scopus 로고
    • A single-strand specific lesion drives MMS-induced hyper-mutability at a double-strand break in yeast
    • Yang, Y., Gordenin, D.A. and Resnick, M.A. (2010) A single-strand specific lesion drives MMS-induced hyper-mutability at a double-strand break in yeast. DNA Repair, 9, 914-921.
    • (2010) DNA Repair , vol.9 , pp. 914-921
    • Yang, Y.1    Gordenin, D.A.2    Resnick, M.A.3
  • 39
    • 80755187806 scopus 로고    scopus 로고
    • Double-strand break end resection and repair pathway choice
    • Symington, L.S. and Gautier, J. (2011) Double-strand break end resection and repair pathway choice. Annu. Rev. Genet., 45, 247-271.
    • (2011) Annu. Rev. Genet. , vol.45 , pp. 247-271
    • Symington, L.S.1    Gautier, J.2
  • 40
    • 77953224210 scopus 로고    scopus 로고
    • Defective resection at DNA double-strand breaks leads to de novo telomere formation and enhances gene targeting
    • Chung, W.H., Zhu, Z., Papusha, A., Malkova, A. and Ira, G. (2010) Defective resection at DNA double-strand breaks leads to de novo telomere formation and enhances gene targeting. PLoS Genet., 6, e1000948.
    • (2010) PLoS Genet. , vol.6
    • Chung, W.H.1    Zhu, Z.2    Papusha, A.3    Malkova, A.4    Ira, G.5
  • 41
    • 77953219442 scopus 로고    scopus 로고
    • Sgs1 and exo1 redundantly inhibit break-induced replication and de novo telomere addition at broken chromosome ends
    • Lydeard, J.R., Lipkin-Moore, Z., Jain, S., Eapen, V.V. and Haber, J.E. (2010) Sgs1 and exo1 redundantly inhibit break-induced replication and de novo telomere addition at broken chromosome ends. PLoS Genet., 6, e1000973.
    • (2010) PLoS Genet. , vol.6
    • Lydeard, J.R.1    Lipkin-Moore, Z.2    Jain, S.3    Eapen, V.V.4    Haber, J.E.5
  • 42
    • 0034663809 scopus 로고    scopus 로고
    • The checkpoint protein Ddc2, functionally related to S. pombe Rad26, interacts with Mec1 and is regulated by Mec1-dependent phosphorylation in budding yeast
    • Paciotti, V., Clerici, M., Lucchini, G. and Longhese, M.P. (2000) The checkpoint protein Ddc2, functionally related to S. pombe Rad26, interacts with Mec1 and is regulated by Mec1-dependent phosphorylation in budding yeast. Genes Dev., 14, 2046-2059.
    • (2000) Genes Dev. , vol.14 , pp. 2046-2059
    • Paciotti, V.1    Clerici, M.2    Lucchini, G.3    Longhese, M.P.4
  • 43
    • 0035989352 scopus 로고    scopus 로고
    • Overlapping roles of the spindle assembly and DNA damage checkpoints in the cell-cycle response to altered chromosomes in Saccharomyces cerevisiae
    • Garber, P.M. and Rine, J. (2002) Overlapping roles of the spindle assembly and DNA damage checkpoints in the cell-cycle response to altered chromosomes in Saccharomyces cerevisiae. Genetics, 161, 521-534.
    • (2002) Genetics , vol.161 , pp. 521-534
    • Garber, P.M.1    Rine, J.2
  • 46
    • 27744530147 scopus 로고    scopus 로고
    • Zinc finger nucleases: Custom-designed molecular scissors for genome engineering of plant and mammalian cells
    • Durai, S., Mani, M., Kandavelou, K., Wu, J., Porteus, M.H. and Chandrasegaran, S. (2005) Zinc finger nucleases: custom-designed molecular scissors for genome engineering of plant and mammalian cells. Nucleic Acids Res., 33, 5978-5990.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 5978-5990
    • Durai, S.1    Mani, M.2    Kandavelou, K.3    Wu, J.4    Porteus, M.H.5    Chandrasegaran, S.6
  • 47
    • 79960034141 scopus 로고    scopus 로고
    • Modularly assembled designer TAL effector nucleases for targeted gene knockout and gene replacement in eukaryotes
    • Li, T., Huang, S., Zhao, X., Wright, D.A., Carpenter, S., Spalding, M.H., Weeks, D.P. and Yang, B. (2011) Modularly assembled designer TAL effector nucleases for targeted gene knockout and gene replacement in eukaryotes. Nucleic Acids Res., 39, 6315-6325.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 6315-6325
    • Li, T.1    Huang, S.2    Zhao, X.3    Wright, D.A.4    Carpenter, S.5    Spalding, M.H.6    Weeks, D.P.7    Yang, B.8
  • 48
    • 0036270543 scopus 로고    scopus 로고
    • Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method
    • Gietz, R.D. and Woods, R.A. (2002) Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method. Methods Enzymol., 350, 87-96.
    • (2002) Methods Enzymol. , vol.350 , pp. 87-96
    • Gietz, R.D.1    Woods, R.A.2


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