-
1
-
-
0031663369
-
The green fluorescent protein
-
Tsien RY, (1998) The green fluorescent protein. Annu Rev Biochem 67: 509-544.
-
(1998)
Annu Rev Biochem
, vol.67
, pp. 509-544
-
-
Tsien, R.Y.1
-
3
-
-
77956015614
-
Automated image analysis for high-content screening and analysis
-
Shariff A, Kangas J, Coelho LP, Quinn S, Murphy RF, (2010) Automated image analysis for high-content screening and analysis. J Biomol Screen 15: 726-734.
-
(2010)
J Biomol Screen
, vol.15
, pp. 726-734
-
-
Shariff, A.1
Kangas, J.2
Coelho, L.P.3
Quinn, S.4
Murphy, R.F.5
-
4
-
-
81855174722
-
Computer vision in cell biology
-
Danuser G, (2011) Computer vision in cell biology. Cell 147: 973-978.
-
(2011)
Cell
, vol.147
, pp. 973-978
-
-
Danuser, G.1
-
5
-
-
77956029024
-
A personal perspective on high-content screening (HCS): from the beginning
-
Taylor DL, (2010) A personal perspective on high-content screening (HCS): from the beginning. J Biomol Screen 15 (7): 720-255.
-
(2010)
J Biomol Screen
, vol.15
, Issue.7
, pp. 255-720
-
-
Taylor, D.L.1
-
6
-
-
0346158531
-
High content screening applied to large-scale cell biology
-
Abraham VC, Taylor DL, Haskins JR, (2004) High content screening applied to large-scale cell biology. Trends Biotechnol 22: 15-22.
-
(2004)
Trends Biotechnol
, vol.22
, pp. 15-22
-
-
Abraham, V.C.1
Taylor, D.L.2
Haskins, J.R.3
-
7
-
-
0001341562
-
High-content screening: a new approach to easing key bottlenecks in the drug discovery process
-
Giuliano KA, DeBiasio RL, Dunlay RT, Gough A, Volosky JM, et al. (1997) High-content screening: a new approach to easing key bottlenecks in the drug discovery process. J Biomol Screen 2: 249-259.
-
(1997)
J Biomol Screen
, vol.2
, pp. 249-259
-
-
Giuliano, K.A.1
DeBiasio, R.L.2
Dunlay, R.T.3
Gough, A.4
Volosky, J.M.5
-
8
-
-
50549104043
-
Bioimage informatics: a new area of engineering biology
-
Peng H, (2008) Bioimage informatics: a new area of engineering biology. Bioinformatics 24: 1827-1836.
-
(2008)
Bioinformatics
, vol.24
, pp. 1827-1836
-
-
Peng, H.1
-
9
-
-
84863208608
-
Biological imaging software tools
-
Eliceiri KW, Berthold MR, Goldberg IG, Ibanez L, Manjunath BS, et al. (2012) Biological imaging software tools. Nat Methods 9: 697-710.
-
(2012)
Nat Methods
, vol.9
, pp. 697-710
-
-
Eliceiri, K.W.1
Berthold, M.R.2
Goldberg, I.G.3
Ibanez, L.4
Manjunath, B.S.5
-
10
-
-
0038284929
-
Phenotypic screening of small molecule libraries by high throughput cell imaging
-
Yarrow JC, Feng Y, Perlman ZE, Kirchhausen T, Mitchison TJ, (2003) Phenotypic screening of small molecule libraries by high throughput cell imaging. Comb Chem High Throughput Screen 6: 279-286.
-
(2003)
Comb Chem High Throughput Screen
, vol.6
, pp. 279-286
-
-
Yarrow, J.C.1
Feng, Y.2
Perlman, Z.E.3
Kirchhausen, T.4
Mitchison, T.J.5
-
11
-
-
8444223104
-
Multidimensional drug profiling by automated microscopy
-
Perlman Z, Slack M, Feng Y, Mitchison T, Wu L, et al. (2004) Multidimensional drug profiling by automated microscopy. Science 306: 1194-1198.
-
(2004)
Science
, vol.306
, pp. 1194-1198
-
-
Perlman, Z.1
Slack, M.2
Feng, Y.3
Mitchison, T.4
Wu, L.5
-
12
-
-
37249026328
-
Integrating high-content screening and ligand-target prediction to identify mechanism of action
-
Young DW, Bender A, Hoyt J, McWhinnie E, Chirn G-W, et al. (2008) Integrating high-content screening and ligand-target prediction to identify mechanism of action. Nat Chem Biol 4: 59-68.
-
(2008)
Nat Chem Biol
, vol.4
, pp. 59-68
-
-
Young, D.W.1
Bender, A.2
Hoyt, J.3
McWhinnie, E.4
Chirn, G.-W.5
-
13
-
-
58049200628
-
Characterizing heterogeneous cellular responses to perturbations
-
Slack MD, Martinez ED, Wu LF, Altschuler SJ, (2008) Characterizing heterogeneous cellular responses to perturbations. Proc Natl Acad Sci U S A 105: 19306-19311.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 19306-19311
-
-
Slack, M.D.1
Martinez, E.D.2
Wu, L.F.3
Altschuler, S.J.4
-
14
-
-
77952257945
-
Patterns of basal signaling heterogeneity can distinguish cellular populations with different drug sensitivities
-
Singh DK, Ku C-J, Wichaidit C, Steininger RJ, Wu LF, et al. (2010) Patterns of basal signaling heterogeneity can distinguish cellular populations with different drug sensitivities. Mol Syst Biol 6: 369.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 369
-
-
Singh, D.K.1
Ku, C.-J.2
Wichaidit, C.3
Steininger, R.J.4
Wu, L.F.5
-
15
-
-
54249117296
-
Phosphorylation networks regulating JNK activity in diverse genetic backgrounds
-
Bakal C, Linding R, Llense F, Heffern E, Martin-Blanco E, et al. (2008) Phosphorylation networks regulating JNK activity in diverse genetic backgrounds. Science 322: 453-456.
-
(2008)
Science
, vol.322
, pp. 453-456
-
-
Bakal, C.1
Linding, R.2
Llense, F.3
Heffern, E.4
Martin-Blanco, E.5
-
16
-
-
34250882643
-
Quantitative morphological signatures define local signaling networks regulating cell morphology
-
Bakal C, Aach J, Church G, Perrimon N, (2007) Quantitative morphological signatures define local signaling networks regulating cell morphology. Science 316: 1753-1756.
-
(2007)
Science
, vol.316
, pp. 1753-1756
-
-
Bakal, C.1
Aach, J.2
Church, G.3
Perrimon, N.4
-
17
-
-
33845792555
-
CellProfiler: image analysis software for identifying and quantifying cell phenotypes
-
Carpenter AE, Jones TR, Lamprecht MR, Clarke C, Kang IH, et al. (2006) CellProfiler: image analysis software for identifying and quantifying cell phenotypes. Genome Biol 7: R100.
-
(2006)
Genome Biol
, vol.7
-
-
Carpenter, A.E.1
Jones, T.R.2
Lamprecht, M.R.3
Clarke, C.4
Kang, I.H.5
-
18
-
-
84862520770
-
Fiji: an open-source platform for biological-image analysis
-
Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, et al. (2012) Fiji: an open-source platform for biological-image analysis. Nat Methods 9: 676-682.
-
(2012)
Nat Methods
, vol.9
, pp. 676-682
-
-
Schindelin, J.1
Arganda-Carreras, I.2
Frise, E.3
Kaynig, V.4
Longair, M.5
-
19
-
-
84863191618
-
Icy: an open bioimage informatics platform for extended reproducible research
-
de Chaumont F, Dallongeville S, Chenouard N, Herve N, Pop S, et al. (2012) Icy: an open bioimage informatics platform for extended reproducible research. Nat Methods 9: 690-696.
-
(2012)
Nat Methods
, vol.9
, pp. 690-696
-
-
de Chaumont, F.1
Dallongeville, S.2
Chenouard, N.3
Herve, N.4
Pop, S.5
-
20
-
-
47149116088
-
Using iterative cluster merging with improved gap statistics to perform online phenotype discovery in the context of high-throughput RNAi screens
-
Yin Z, Zhou X, Bakal C, Li F, Sun Y, et al. (2008) Using iterative cluster merging with improved gap statistics to perform online phenotype discovery in the context of high-throughput RNAi screens. BMC Bioinformatics 9: 264.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 264
-
-
Yin, Z.1
Zhou, X.2
Bakal, C.3
Li, F.4
Sun, Y.5
-
21
-
-
84863192185
-
PhenoRipper: software for rapidly profiling microscopy images
-
Rajaram S, Pavie B, Wu LF, Altschuler SJ, (2012) PhenoRipper: software for rapidly profiling microscopy images. Nat Methods 9: 635-637.
-
(2012)
Nat Methods
, vol.9
, pp. 635-637
-
-
Rajaram, S.1
Pavie, B.2
Wu, L.F.3
Altschuler, S.J.4
-
22
-
-
77950387346
-
Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes
-
Neumann B, Walter T, Heriche JK, Bulkescher J, Erfle H, et al. (2010) Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes. Nature 464: 721-727.
-
(2010)
Nature
, vol.464
, pp. 721-727
-
-
Neumann, B.1
Walter, T.2
Heriche, J.K.3
Bulkescher, J.4
Erfle, H.5
-
23
-
-
77956339402
-
CellCognition: time-resolved phenotype annotation in high-throughput live cell imaging
-
Held M, Schmitz MH, Fischer B, Walter T, Neumann B, et al. (2010) CellCognition: time-resolved phenotype annotation in high-throughput live cell imaging. Nat Methods 7: 747-754.
-
(2010)
Nat Methods
, vol.7
, pp. 747-754
-
-
Held, M.1
Schmitz, M.H.2
Fischer, B.3
Walter, T.4
Neumann, B.5
-
24
-
-
27144518175
-
Chromosome nondisjunction yields tetraploid rather than aneuploid cells in human cell lines
-
Shi Q, King RW, (2005) Chromosome nondisjunction yields tetraploid rather than aneuploid cells in human cell lines. Nature 437: 1038-1042.
-
(2005)
Nature
, vol.437
, pp. 1038-1042
-
-
Shi, Q.1
King, R.W.2
-
25
-
-
80053164461
-
A time-series method for automated measurement of changes in mitotic and interphase duration from time-lapse movies
-
doi: 10.1371/journal.pone.0025511
-
Sigoillot FD, Huckins JF, Li F, Zhou X, Wong ST, et al. (2011) A time-series method for automated measurement of changes in mitotic and interphase duration from time-lapse movies. PLoS ONE 6: e25511 doi:10.1371/journal.pone.0025511.
-
(2011)
PLoS ONE
, vol.6
-
-
Sigoillot, F.D.1
Huckins, J.F.2
Li, F.3
Zhou, X.4
Wong, S.T.5
-
26
-
-
28444483106
-
Stem cell characteristics of amniotic epithelial cells
-
Miki T, Lehmann T, Cai H, Stolz DB, Strom SC, (2005) Stem cell characteristics of amniotic epithelial cells. Stem Cells 23: 1549-1559.
-
(2005)
Stem Cells
, vol.23
, pp. 1549-1559
-
-
Miki, T.1
Lehmann, T.2
Cai, H.3
Stolz, D.B.4
Strom, S.C.5
-
27
-
-
48749119799
-
Cell population tracking and lineage construction with spatiotemporal context
-
Li K, Miller ED, Chen M, Kanade T, Weiss LE, et al. (2008) Cell population tracking and lineage construction with spatiotemporal context. Med Image Anal 12: 546-566.
-
(2008)
Med Image Anal
, vol.12
, pp. 546-566
-
-
Li, K.1
Miller, E.D.2
Chen, M.3
Kanade, T.4
Weiss, L.E.5
-
28
-
-
77649263847
-
Computational prediction of neural progenitor cell fates
-
Cohen AR, Gomes FL, Roysam B, Cayouette M, (2011) Computational prediction of neural progenitor cell fates. Nat Methods 7: 213-218.
-
(2011)
Nat Methods
, vol.7
, pp. 213-218
-
-
Cohen, A.R.1
Gomes, F.L.2
Roysam, B.3
Cayouette, M.4
-
29
-
-
84863204506
-
BioImageXD: an open, general-purpose and high-throughput image-processing platform
-
Kankaanpaa P, Paavolainen L, Tiitta S, Karjalainen M, Paivarinne J, et al. (2012) BioImageXD: an open, general-purpose and high-throughput image-processing platform. Nat Methods 9: 683-689.
-
(2012)
Nat Methods
, vol.9
, pp. 683-689
-
-
Kankaanpaa, P.1
Paavolainen, L.2
Tiitta, S.3
Karjalainen, M.4
Paivarinne, J.5
-
30
-
-
73849143622
-
Multiple Nuclei Tracking Using Integer Programming for Quantitative Cancer Cell Cycle Analysis
-
Li F, Zhou X, Ma J, Wong TCS, (2010) Multiple Nuclei Tracking Using Integer Programming for Quantitative Cancer Cell Cycle Analysis. IEEE Trans Med Imaging 29: 96-105.
-
(2010)
IEEE Trans Med Imaging
, vol.29
, pp. 96-105
-
-
Li, F.1
Zhou, X.2
Ma, J.3
Wong, T.C.S.4
-
31
-
-
84865555512
-
TLM-Tracker: software for cell segmentation, tracking and lineage analysis in time-lapse microscopy movies
-
Klein J, Leupold S, Biegler I, Biedendieck R, Munch R, et al. (2012) TLM-Tracker: software for cell segmentation, tracking and lineage analysis in time-lapse microscopy movies. Bioinformatics 28: 2276-2277.
-
(2012)
Bioinformatics
, vol.28
, pp. 2276-2277
-
-
Klein, J.1
Leupold, S.2
Biegler, I.3
Biedendieck, R.4
Munch, R.5
-
32
-
-
16344375400
-
Dendritic spines and long-term plasticity
-
Segal M, (2005) Dendritic spines and long-term plasticity. Nat Rev Neurosci 6: 277-284.
-
(2005)
Nat Rev Neurosci
, vol.6
, pp. 277-284
-
-
Segal, M.1
-
33
-
-
0035020462
-
Molecular and anatomical studies in Alzheimer's disease
-
Hyman BT, (2001) Molecular and anatomical studies in Alzheimer's disease. Neurologia 16: 100-104.
-
(2001)
Neurologia
, vol.16
, pp. 100-104
-
-
Hyman, B.T.1
-
34
-
-
68949157066
-
Supraresolution imaging in brain slices using stimulated-emission depletion two-photon laser scanning microscopy
-
Ding JB, Takasaki KT, Sabatini BL, (2009) Supraresolution imaging in brain slices using stimulated-emission depletion two-photon laser scanning microscopy. Neuron 63: 429-437.
-
(2009)
Neuron
, vol.63
, pp. 429-437
-
-
Ding, J.B.1
Takasaki, K.T.2
Sabatini, B.L.3
-
35
-
-
57749107742
-
Live-cell imaging of dendritic spines by STED microscopy
-
Nagerl UV, Willig KI, Hein B, Hell SW, Bonhoeffer T, (2008) Live-cell imaging of dendritic spines by STED microscopy. Proc Natl Acad Sci U S A 105: 18982-18987.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 18982-18987
-
-
Nagerl, U.V.1
Willig, K.I.2
Hein, B.3
Hell, S.W.4
Bonhoeffer, T.5
-
36
-
-
7044220658
-
State-dependent calcium signaling in dendritic spines of striatal medium spiny neurons
-
Carter AG, Sabatini BL, (2004) State-dependent calcium signaling in dendritic spines of striatal medium spiny neurons. Neuron 44: 483-493.
-
(2004)
Neuron
, vol.44
, pp. 483-493
-
-
Carter, A.G.1
Sabatini, B.L.2
-
37
-
-
44349134543
-
Three-dimensional random access multiphoton microscopy for functional imaging of neuronal activity
-
Duemani Reddy G, Kelleher K, Fink R, Saggau P, (2008) Three-dimensional random access multiphoton microscopy for functional imaging of neuronal activity. Nat Neurosci 11: 713-720.
-
(2008)
Nat Neurosci
, vol.11
, pp. 713-720
-
-
Duemani Reddy, G.1
Kelleher, K.2
Fink, R.3
Saggau, P.4
-
38
-
-
33644798116
-
Fast functional imaging of single neurons using random-access multiphoton (RAMP) microscopy
-
Iyer V, Hoogland TM, Saggau P, (2006) Fast functional imaging of single neurons using random-access multiphoton (RAMP) microscopy. J Neurophysiol 95: 535-545.
-
(2006)
J Neurophysiol
, vol.95
, pp. 535-545
-
-
Iyer, V.1
Hoogland, T.M.2
Saggau, P.3
-
39
-
-
34447506014
-
A novel computational approach for automatic dendrite spines detection in two-photon laser scan microscopy
-
Cheng J, Zhou X, Miller E, Witt RM, Zhu J, et al. (2007) A novel computational approach for automatic dendrite spines detection in two-photon laser scan microscopy. J Neurosci Methods 165: 122-134.
-
(2007)
J Neurosci Methods
, vol.165
, pp. 122-134
-
-
Cheng, J.1
Zhou, X.2
Miller, E.3
Witt, R.M.4
Zhu, J.5
-
40
-
-
84858598107
-
Identification of small molecule inhibitors of neurite loss induced by Abeta peptide using high content screening
-
Ofengeim D, Shi P, Miao B, Fan J, Xia X, et al. (2012) Identification of small molecule inhibitors of neurite loss induced by Abeta peptide using high content screening. J Biol Chem 287: 8714-8723.
-
(2012)
J Biol Chem
, vol.287
, pp. 8714-8723
-
-
Ofengeim, D.1
Shi, P.2
Miao, B.3
Fan, J.4
Xia, X.5
-
41
-
-
79958036999
-
NeurphologyJ: an automatic neuronal morphology quantification method and its application in pharmacological discovery
-
Ho SY, Chao CY, Huang HL, Chiu TW, Charoenkwan P, et al. (2011) NeurphologyJ: an automatic neuronal morphology quantification method and its application in pharmacological discovery. BMC Bioinformatics 12: 230.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 230
-
-
Ho, S.Y.1
Chao, C.Y.2
Huang, H.L.3
Chiu, T.W.4
Charoenkwan, P.5
-
42
-
-
1942470024
-
Design and validation of a tool for neurite tracing and analysis in fluorescence microscopy images
-
Meijering E, Jacob M, Sarria JC, Steiner P, Hirling H, et al. (2004) Design and validation of a tool for neurite tracing and analysis in fluorescence microscopy images. Cytometry A 58: 167-176.
-
(2004)
Cytometry A
, vol.58
, pp. 167-176
-
-
Meijering, E.1
Jacob, M.2
Sarria, J.C.3
Steiner, P.4
Hirling, H.5
-
43
-
-
38049081130
-
NeuriteTracer: a novel ImageJ plugin for automated quantification of neurite outgrowth
-
Pool M, Thiemann J, Bar-Or A, Fournier AE, (2008) NeuriteTracer: a novel ImageJ plugin for automated quantification of neurite outgrowth. J Neurosci Methods 168: 134-139.
-
(2008)
J Neurosci Methods
, vol.168
, pp. 134-139
-
-
Pool, M.1
Thiemann, J.2
Bar-Or, A.3
Fournier, A.E.4
-
44
-
-
33746563339
-
Automated neurite labeling and analysis in fluorescence microscopy images
-
Xiong G, Zhou X, Degterev A, Ji L, Wong STC, (2006) Automated neurite labeling and analysis in fluorescence microscopy images. Cytometry Part A 69A: 494-505.
-
(2006)
Cytometry Part A
, vol.69 A
, pp. 494-505
-
-
Xiong, G.1
Zhou, X.2
Degterev, A.3
Ji, L.4
Wong, S.T.C.5
-
45
-
-
33847238451
-
NeuronMetrics: software for semi-automated processing of cultured neuron images
-
Narro ML, Yang F, Kraft R, Wenk C, Efrat A, et al. (2007) NeuronMetrics: software for semi-automated processing of cultured neuron images. Brain Res 1138: 57-75.
-
(2007)
Brain Res
, vol.1138
, pp. 57-75
-
-
Narro, M.L.1
Yang, F.2
Kraft, R.3
Wenk, C.4
Efrat, A.5
-
46
-
-
44349154735
-
Automated three-dimensional detection and shape classification of dendritic spines from fluorescence microscopy images
-
doi: 10.1371/journal.pone.0001997
-
Rodriguez A, Ehlenberger DB, Dickstein DL, Hof PR, Wearne SL, (2008) Automated three-dimensional detection and shape classification of dendritic spines from fluorescence microscopy images. PLoS ONE 3: e1997 doi:10.1371/journal.pone.0001997.
-
(2008)
PLoS ONE
, vol.3
-
-
Rodriguez, A.1
Ehlenberger, D.B.2
Dickstein, D.L.3
Hof, P.R.4
Wearne, S.L.5
-
47
-
-
28844498390
-
New techniques for imaging, digitization and analysis of three-dimensional neural morphology on multiple scales
-
Wearne SL, Rodriguez A, Ehlenberger DB, Rocher AB, Henderson SC, et al. (2005) New techniques for imaging, digitization and analysis of three-dimensional neural morphology on multiple scales. Neuroscience 136: 661-680.
-
(2005)
Neuroscience
, vol.136
, pp. 661-680
-
-
Wearne, S.L.1
Rodriguez, A.2
Ehlenberger, D.B.3
Rocher, A.B.4
Henderson, S.C.5
-
48
-
-
34248183921
-
Dendritic spine detection using curvilinear structure detector and LDA classifier
-
Zhang Y, Zhou X, Witt RM, Sabatini BL, Adjeroh D, et al. (2007) Dendritic spine detection using curvilinear structure detector and LDA classifier. Neuroimage 36: 346-360.
-
(2007)
Neuroimage
, vol.36
, pp. 346-360
-
-
Zhang, Y.1
Zhou, X.2
Witt, R.M.3
Sabatini, B.L.4
Adjeroh, D.5
-
49
-
-
77954196544
-
Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model
-
Peng H, Ruan Z, Atasoy D, Sternson S, (2010) Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model. Bioinformatics 26: i38-i46.
-
(2010)
Bioinformatics
, vol.26
-
-
Peng, H.1
Ruan, Z.2
Atasoy, D.3
Sternson, S.4
-
50
-
-
79959470488
-
Automatic 3D neuron tracing using all-path pruning
-
Peng H, Long F, Myers G, (2011) Automatic 3D neuron tracing using all-path pruning. Bioinformatics 27: i239-i247.
-
(2011)
Bioinformatics
, vol.27
-
-
Peng, H.1
Long, F.2
Myers, G.3
-
51
-
-
77954289614
-
Neuron tracing in perspective
-
Meijering E, (2010) Neuron tracing in perspective. Cytometry A 77: 693-704.
-
(2010)
Cytometry A
, vol.77
, pp. 693-704
-
-
Meijering, E.1
-
52
-
-
33745957981
-
AceTree: a tool for visual analysis of Caenorhabditis elegans embryogenesis
-
Boyle TJ, Bao Z, Murray JI, Araya CL, Waterston RH, (2006) AceTree: a tool for visual analysis of Caenorhabditis elegans embryogenesis. BMC Bioinformatics 7: 275.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 275
-
-
Boyle, T.J.1
Bao, Z.2
Murray, J.I.3
Araya, C.L.4
Waterston, R.H.5
-
53
-
-
33644521215
-
Automated cell lineage tracing in Caenorhabditis elegans
-
Bao Z, Murray JI, Boyle T, Ooi SL, Sandel MJ, et al. (2006) Automated cell lineage tracing in Caenorhabditis elegans. Proc Natl Acad Sci U S A 103: 2707-2712.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 2707-2712
-
-
Bao, Z.1
Murray, J.I.2
Boyle, T.3
Ooi, S.L.4
Sandel, M.J.5
-
54
-
-
84865266808
-
A genome-scale resource for in vivo tag-based protein function exploration in C. elegans
-
Sarov M, Murray JI, Schanze K, Pozniakovski A, Niu W, et al. (2012) A genome-scale resource for in vivo tag-based protein function exploration in C. elegans. Cell 150: 855-866.
-
(2012)
Cell
, vol.150
, pp. 855-866
-
-
Sarov, M.1
Murray, J.I.2
Schanze, K.3
Pozniakovski, A.4
Niu, W.5
-
55
-
-
70350355138
-
Analysis of cell fate from single-cell gene expression profiles in C. elegans
-
Liu X, Long F, Peng H, Aerni SJ, Jiang M, et al. (2009) Analysis of cell fate from single-cell gene expression profiles in C. elegans. Cell 139: 623-633.
-
(2009)
Cell
, vol.139
, pp. 623-633
-
-
Liu, X.1
Long, F.2
Peng, H.3
Aerni, S.J.4
Jiang, M.5
-
56
-
-
69549097485
-
A 3D digital atlas of C. elegans and its application to single-cell analyses
-
Long F, Peng H, Liu X, Kim SK, Myers E, (2009) A 3D digital atlas of C. elegans and its application to single-cell analyses. Nat Methods 6: 667-672.
-
(2009)
Nat Methods
, vol.6
, pp. 667-672
-
-
Long, F.1
Peng, H.2
Liu, X.3
Kim, S.K.4
Myers, E.5
-
57
-
-
84863195344
-
An image analysis toolbox for high-throughput C. elegans assays
-
Wahlby C, Kamentsky L, Liu ZH, Riklin-Raviv T, Conery AL, et al. (2012) An image analysis toolbox for high-throughput C. elegans assays. Nat Methods 9: 714-716.
-
(2012)
Nat Methods
, vol.9
, pp. 714-716
-
-
Wahlby, C.1
Kamentsky, L.2
Liu, Z.H.3
Riklin-Raviv, T.4
Conery, A.L.5
-
59
-
-
3042547731
-
Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections
-
Wahlby C, Sintorn I, Erlandsson F, Borgefors G, Bengtsson E, (2004) Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections. J Microsc 215: 67-76.
-
(2004)
J Microsc
, vol.215
, pp. 67-76
-
-
Wahlby, C.1
Sintorn, I.2
Erlandsson, F.3
Borgefors, G.4
Bengtsson, E.5
-
60
-
-
33751033207
-
Detecting salient blob-like image structures and their scales with a scale-space primal sketch: a method for focus-of-attention
-
Lindeberg T, (1993) Detecting salient blob-like image structures and their scales with a scale-space primal sketch: a method for focus-of-attention. Int J Comput Vision 11: 283-318.
-
(1993)
Int J Comput Vision
, vol.11
, pp. 283-318
-
-
Lindeberg, T.1
-
61
-
-
0032209062
-
Feature detection with automatic scale selection
-
Lindeberg T, (1998) Feature detection with automatic scale selection. Int J Comput Vision 30: 79-116.
-
(1998)
Int J Comput Vision
, vol.30
, pp. 79-116
-
-
Lindeberg, T.1
-
62
-
-
33747347874
-
Automated tool for the detection of cell nuclei in digital microscopic images: application to retinal images
-
Byun J, Verardo MR, Sumengen B, Lewis GP, Manjunath BS, et al. (2006) Automated tool for the detection of cell nuclei in digital microscopic images: application to retinal images. Mol Vis 12: 949-960.
-
(2006)
Mol Vis
, vol.12
, pp. 949-960
-
-
Byun, J.1
Verardo, M.R.2
Sumengen, B.3
Lewis, G.P.4
Manjunath, B.S.5
-
63
-
-
77950245872
-
Improved automatic detection and segmentation of cell nuclei in histopathology images
-
Al-Kofahi Y, Lassoued W, Lee W, Roysam B, (2010) Improved automatic detection and segmentation of cell nuclei in histopathology images. IEEE Trans Biomed Eng 57: 841-852.
-
(2010)
IEEE Trans Biomed Eng
, vol.57
, pp. 841-852
-
-
Al-Kofahi, Y.1
Lassoued, W.2
Lee, W.3
Roysam, B.4
-
64
-
-
35948953980
-
3D cell nuclei segmentation based on gradient flow tracking
-
Li G, Liu T, Tarokh A, Nie J, Guo L, et al. (2007) 3D cell nuclei segmentation based on gradient flow tracking. BMC Cell Biology 8: 40.
-
(2007)
BMC Cell Biology
, vol.8
, pp. 40
-
-
Li, G.1
Liu, T.2
Tarokh, A.3
Nie, J.4
Guo, L.5
-
65
-
-
0032028944
-
Snakes, shapes, and gradient vector flow
-
Xu C, Prince JL, (1998) Snakes, shapes, and gradient vector flow. IEEE Transactions on Image Processing 7: 359-369.
-
(1998)
IEEE Transactions on Image Processing
, vol.7
, pp. 359-369
-
-
Xu, C.1
Prince, J.L.2
-
66
-
-
0015285440
-
Use of the Hough transformation to detect lines and curves in pictures
-
Duda RO, Hart PE, (1972) Use of the Hough transformation to detect lines and curves in pictures. Commun ACM 15: 11-15.
-
(1972)
Commun ACM
, vol.15
, pp. 11-15
-
-
Duda, R.O.1
Hart, P.E.2
-
67
-
-
33947284425
-
Iterative voting for inference of structural saliency and characterization of subcellular events
-
Parvin B, Yang Q, Han J, Chang H, Rydberg B, et al. (2007) Iterative voting for inference of structural saliency and characterization of subcellular events. IEEE Trans Image Process 16: 615-623.
-
(2007)
IEEE Trans Image Process
, vol.16
, pp. 615-623
-
-
Parvin, B.1
Yang, Q.2
Han, J.3
Chang, H.4
Rydberg, B.5
-
68
-
-
0348134935
-
A hybrid 3D watershed algorithm incorporating gradient cues and object models for automatic segmentation of nuclei in confocal image stacks
-
Lin G, Adiga U, Olson K, Guzowski JF, Barnes CA, et al. (2003) A hybrid 3D watershed algorithm incorporating gradient cues and object models for automatic segmentation of nuclei in confocal image stacks. Cytometry A 56: 23-36.
-
(2003)
Cytometry A
, vol.56
, pp. 23-36
-
-
Lin, G.1
Adiga, U.2
Olson, K.3
Guzowski, J.F.4
Barnes, C.A.5
-
71
-
-
84890555300
-
Cell segmentation for division rate estimation in computerized video time-lapse microscopy
-
He W, Wang X, Metaxas D, Mathew R, White E, (2007) Cell segmentation for division rate estimation in computerized video time-lapse microscopy. pp. 643109-643109.
-
(2007)
, pp. 643109
-
-
He, W.1
Wang, X.2
Metaxas, D.3
Mathew, R.4
White, E.5
-
72
-
-
34547670472
-
Detection of molecular particles in live cells via machine learning
-
Jiang S, Zhou X, Kirchhausen T, Wong ST, (2007) Detection of molecular particles in live cells via machine learning. Cytometry A 71: 563-575.
-
(2007)
Cytometry A
, vol.71
, pp. 563-575
-
-
Jiang, S.1
Zhou, X.2
Kirchhausen, T.3
Wong, S.T.4
-
75
-
-
0036591381
-
Rapid automated three-dimensional tracing of neurons from confocalimage stacks
-
Al-Kofahi KA, Lasek S, Szarowski DH, Pace CJ, Nagy G, et al. (2002) Rapid automated three-dimensional tracing of neurons from confocalimage stacks. IEEE Transactions on Information Technology in Biomedicine 6: 171-187.
-
(2002)
IEEE Transactions on Information Technology in Biomedicine
, vol.6
, pp. 171-187
-
-
Al-Kofahi, K.A.1
Lasek, S.2
Szarowski, D.H.3
Pace, C.J.4
Nagy, G.5
-
76
-
-
33847623247
-
Robust 3-D modeling of vasculature imagery using superellipsoids
-
Tyrrell JA, di Tomaso E, Fuja D, Ricky T, Kozak K, et al. (2007) Robust 3-D modeling of vasculature imagery using superellipsoids. IEEE Trans Med Imaging 26: 223-237.
-
(2007)
IEEE Trans Med Imaging
, vol.26
, pp. 223-237
-
-
Tyrrell, J.A.1
di Tomaso, E.2
Fuja, D.3
Ricky, T.4
Kozak, K.5
-
77
-
-
33748099339
-
Retinal vessel segmentation using the 2-D Gabor wavelet and supervised classification
-
Soares JVB, Leandro JJG, Cesar RM, Jelinek HF, Cree MJ, (2006) Retinal vessel segmentation using the 2-D Gabor wavelet and supervised classification. IEEE Trans Med Imaging 25: 1214-1222.
-
(2006)
IEEE Trans Med Imaging
, vol.25
, pp. 1214-1222
-
-
Soares, J.V.B.1
Leandro, J.J.G.2
Cesar, R.M.3
Jelinek, H.F.4
Cree, M.J.5
-
78
-
-
1942454910
-
Ridge-based vessel segmentation in color images of the retina
-
Staal J, Abramoff MD, Niemeijer M, Viergever MA, van Ginneken B, (2004) Ridge-based vessel segmentation in color images of the retina. IEEE Trans Med Imaging 23: 501-509.
-
(2004)
IEEE Trans Med Imaging
, vol.23
, pp. 501-509
-
-
Staal, J.1
Abramoff, M.D.2
Niemeijer, M.3
Viergever, M.A.4
van Ginneken, B.5
-
79
-
-
84865777319
-
Blood vessel segmentation methodologies in retinal images - a survey
-
Fraz M, Remagnino P, Hoppe A, Uyyanonvara B, Rudnicka A, et al. (2012) Blood vessel segmentation methodologies in retinal images- a survey. Comput Methods Programs Biomed 108 (1): 407-433.
-
(2012)
Comput Methods Programs Biomed
, vol.108
, Issue.1
, pp. 407-433
-
-
Fraz, M.1
Remagnino, P.2
Hoppe, A.3
Uyyanonvara, B.4
Rudnicka, A.5
-
81
-
-
0015644825
-
A fuzzy relative of the ISODATA process and its use in detecting compact well-separated clusters
-
Dunn JC, (1973) A fuzzy relative of the ISODATA process and its use in detecting compact well-separated clusters. Journal of Cybernetics 3: 32-57.
-
(1973)
Journal of Cybernetics
, vol.3
, pp. 32-57
-
-
Dunn, J.C.1
-
83
-
-
0001722484
-
The watershed transformation applied to image segmentation
-
Beucher S, (1992) The watershed transformation applied to image segmentation. Scanning Microscopy International 6: 299-314.
-
(1992)
Scanning Microscopy International
, vol.6
, pp. 299-314
-
-
Beucher, S.1
-
85
-
-
0036428531
-
Algorithms for cytoplasm segmentation of fluorescence labelled cells
-
Wahlby C, Lindblad J, Vondrus M, Bengtsson E, Bjorkesten L, (2002) Algorithms for cytoplasm segmentation of fluorescence labelled cells. Analytical Cellular Pathology 24: 101-111.
-
(2002)
Analytical Cellular Pathology
, vol.24
, pp. 101-111
-
-
Wahlby, C.1
Lindblad, J.2
Vondrus, M.3
Bengtsson, E.4
Bjorkesten, L.5
-
88
-
-
0036826342
-
Segmentation and tracking of migrating cells in videomicroscopy with parametric active contours: a tool for cell-based drug testing
-
Zimmer C, Labruyère E, Meas-Yedid V, Guillén N, Olivo-Marin J, (2002) Segmentation and tracking of migrating cells in videomicroscopy with parametric active contours: a tool for cell-based drug testing. IEEE Trans Med Imaging 21: 1212-1221.
-
(2002)
IEEE Trans Med Imaging
, vol.21
, pp. 1212-1221
-
-
Zimmer, C.1
Labruyère, E.2
Meas-Yedid, V.3
Guillén, N.4
Olivo-Marin, J.5
-
89
-
-
39449105350
-
Automatic segmentation of high-throughput RNAi fluorescent cellular images
-
Yan P, Zhou X, Shah M, Wong ST, (2008) Automatic segmentation of high-throughput RNAi fluorescent cellular images. IEEE Trans Inf Technol Biomed 12: 109-117.
-
(2008)
IEEE Trans Inf Technol Biomed
, vol.12
, pp. 109-117
-
-
Yan, P.1
Zhou, X.2
Shah, M.3
Wong, S.T.4
-
90
-
-
26444456033
-
Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces
-
Dufour A, Shinin V, Tajbakhsh S, Guillen-Aghion N, Olivo-Marin JC, et al. (2005) Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces. IEEE Transactions on Image Processing 14: 1396-1410.
-
(2005)
IEEE Transactions on Image Processing
, vol.14
, pp. 1396-1410
-
-
Dufour, A.1
Shinin, V.2
Tajbakhsh, S.3
Guillen-Aghion, N.4
Olivo-Marin, J.C.5
-
92
-
-
44749084234
-
Fronts propagating with curvature-dependent speed: Algorithms based on Hamilton-Jacobi formulations
-
Osher S, Sethian JA, (1988) Fronts propagating with curvature-dependent speed: Algorithms based on Hamilton-Jacobi formulations. Journal of Computation Physics 79: 12-49.
-
(1988)
Journal of Computation Physics
, vol.79
, pp. 12-49
-
-
Osher, S.1
Sethian, J.A.2
-
94
-
-
84976826673
-
Voronoi diagrams - a survey of a fundamental geometric data structure
-
Aurenhammer F, (1991) Voronoi diagrams- a survey of a fundamental geometric data structure. ACM Comput Surv 23: 345-405.
-
(1991)
ACM Comput Surv
, vol.23
, pp. 345-405
-
-
Aurenhammer, F.1
-
98
-
-
78349263597
-
-
Radhakrishna A, Shaji A, Smith K, Lucchi A, Fua P, et al. (June, 2010) SLIC superpixels. Technical report 149300, EPFL.
-
(2010)
SLIC superpixels. Technical report 149300, EPFL
-
-
Radhakrishna, A.1
Shaji, A.2
Smith, K.3
Lucchi, A.4
Fua, P.5
-
99
-
-
84876887843
-
A fully automated approach to segmentation of irregularly shaped cellular structures in EM images. Proceedings of the 13th International Conference on Medical Image Computing and Computer-Assisted Intervention
-
Lucchi A, Smith K, Achanta R, Lepetit V, Fua P, (2010) A fully automated approach to segmentation of irregularly shaped cellular structures in EM images. Proceedings of the 13th International Conference on Medical Image Computing and Computer-Assisted Intervention. Med Image Comput Comput Assist Interv 13 (Pt 2): 463-471.
-
(2010)
Med Image Comput Comput Assist Interv
, vol.13
, Issue.Pt 2
, pp. 463-471
-
-
Lucchi, A.1
Smith, K.2
Achanta, R.3
Lepetit, V.4
Fua, P.5
-
100
-
-
20744450613
-
Tracking of migrating cells under phase-contrast video microscopy with combined mean-shift processes
-
Debeir O, Ham PV, Kiss R, Decaestecker C, (2005) Tracking of migrating cells under phase-contrast video microscopy with combined mean-shift processes. IEEE Trans Med Imaging 24: 697-711.
-
(2005)
IEEE Trans Med Imaging
, vol.24
, pp. 697-711
-
-
Debeir, O.1
Ham, P.V.2
Kiss, R.3
Decaestecker, C.4
-
102
-
-
33744790029
-
Cell segmentation, tracking, and mitosis detection using temporal context
-
Yang F, Mackey MA, Ianzini F, Gallardo G, Sonka M, (2005) Cell segmentation, tracking, and mitosis detection using temporal context. Med Image Comput Comput Assist Interv 8 (Pt 1): 302-309.
-
(2005)
Med Image Comput Comput Assist Interv
, vol.8
, Issue.Pt 1
, pp. 302-309
-
-
Yang, F.1
Mackey, M.A.2
Ianzini, F.3
Gallardo, G.4
Sonka, M.5
-
103
-
-
33750938661
-
Quantitative cell motility for in vitro wound healing using level set-based active contour tracking
-
Bunyak F, Palaniappan K, Nath SK, Baskin TL, Gang D, (2006) Quantitative cell motility for in vitro wound healing using level set-based active contour tracking. Proc IEEE Int Symp Biomed Imaging 2006 April 6 pp. 1040-1043.
-
(2006)
Proc IEEE Int Symp Biomed Imaging 2006 April 6
, pp. 1040-1043
-
-
Bunyak, F.1
Palaniappan, K.2
Nath, S.K.3
Baskin, T.L.4
Gang, D.5
-
104
-
-
77749279421
-
Advanced level-set-based cell tracking in time-lapse fluorescence microscopy
-
Dzyubachyk O, van Cappellen WA, Essers J, Niessen WJ, Meijering E, (2010) Advanced level-set-based cell tracking in time-lapse fluorescence microscopy. IEEE Trans Med Imaging 29: 852-867.
-
(2010)
IEEE Trans Med Imaging
, vol.29
, pp. 852-867
-
-
Dzyubachyk, O.1
van Cappellen, W.A.2
Essers, J.3
Niessen, W.J.4
Meijering, E.5
-
106
-
-
33845543465
-
Online tracking of migrating and proliferating cells imaged with phase-contrast microscopy
-
New York City, New York
-
Li K, Miller ED, Weiss LE, Campbell PG, Kanade T (2006) Online tracking of migrating and proliferating cells imaged with phase-contrast microscopy. Conference on Computer Vision and Pattern Recognition Workshop. New York City, New York. pp. 65.
-
(2006)
Conference on Computer Vision and Pattern Recognition Workshop
, pp. 65
-
-
Li, K.1
Miller, E.D.2
Weiss, L.E.3
Campbell, P.G.4
Kanade, T.5
-
107
-
-
84883846212
-
Cell segmentation using coupled level sets and graph-vertex coloring. Proceedings of the 9th International Conference on Medical Image Computing and Computer-Assisted Intervention
-
Nath SK, Palaniappan K, Bunyak F, (2006) Cell segmentation using coupled level sets and graph-vertex coloring. Proceedings of the 9th International Conference on Medical Image Computing and Computer-Assisted Intervention. Med Image Comput Comput Assist Interv 9 (Pt 1): 101-108.
-
(2006)
Med Image Comput Comput Assist Interv
, vol.9
, Issue.Pt 1
, pp. 101-108
-
-
Nath, S.K.1
Palaniappan, K.2
Bunyak, F.3
-
108
-
-
84972498411
-
Every planar map is four colorable part I. Discharging
-
Appel K, Haken W, (1977) Every planar map is four colorable part I. Discharging. Illinois Journal of Mathematics pp. 429-490.
-
(1977)
Illinois Journal of Mathematics
, pp. 429-490
-
-
Appel, K.1
Haken, W.2
-
110
-
-
33750949950
-
Spatio-temporal cell cycle analysis using 3D level set segmentation of unstained nuclei in line scan confocal fluorescence images
-
Padfield DR, Rittscher J, Sebastian T, Thomas N, Roysam B (2006) Spatio-temporal cell cycle analysis using 3D level set segmentation of unstained nuclei in line scan confocal fluorescence images. 3rd IEEE International Symposium on Biomedical Imaging; 6-9 April 2006. pp. 1036-1039.
-
(2006)
3rd IEEE International Symposium on Biomedical Imaging; 6-9 April 2006
, pp. 1036-1039
-
-
Padfield, D.R.1
Rittscher, J.2
Sebastian, T.3
Thomas, N.4
Roysam, B.5
-
112
-
-
57049136583
-
Spatio-temporal cell cycle phase analysis using level sets and fast marching methods
-
Padfield D, Rittscher J, Thomas N, Roysam B, (2009) Spatio-temporal cell cycle phase analysis using level sets and fast marching methods. Medical Image Analysis 13: 143-155.
-
(2009)
Medical Image Analysis
, vol.13
, pp. 143-155
-
-
Padfield, D.1
Rittscher, J.2
Thomas, N.3
Roysam, B.4
-
113
-
-
32244445804
-
Automated cell lineage construction: a rapid method to analyze clonal development established with murine neural progenitor cells
-
Al-Kofahi O, Radke RJ, Goderie SK, Shen Q, Temple S, et al. (2006) Automated cell lineage construction: a rapid method to analyze clonal development established with murine neural progenitor cells. Cell Cycle 5: 327-335.
-
(2006)
Cell Cycle
, vol.5
, pp. 327-335
-
-
Al-Kofahi, O.1
Radke, R.J.2
Goderie, S.K.3
Shen, Q.4
Temple, S.5
-
114
-
-
33645326241
-
Automated segmentation, classification, and tracking of cancer cell nuclei in time-lapse microscopy
-
Chen X, Zhou X, Wong STC, (2006) Automated segmentation, classification, and tracking of cancer cell nuclei in time-lapse microscopy. IEEE Transactions on Biomedical Engineering 53: 762-766.
-
(2006)
IEEE Transactions on Biomedical Engineering
, vol.53
, pp. 762-766
-
-
Chen, X.1
Zhou, X.2
Wong, S.T.C.3
-
115
-
-
84883832573
-
Automated analysis of the mitotic phases of human cells in 3D fluorescence microscopy image sequences
-
Harder N, Mora-Bermudez F, Godinez WJ, Ellenberg J, Eils R, et al. (2006) Automated analysis of the mitotic phases of human cells in 3D fluorescence microscopy image sequences. Med Image Comput Comput Assist Interv 9: 840-848.
-
(2006)
Med Image Comput Comput Assist Interv
, vol.9
, pp. 840-848
-
-
Harder, N.1
Mora-Bermudez, F.2
Godinez, W.J.3
Ellenberg, J.4
Eils, R.5
-
116
-
-
84883846561
-
Cell population tracking and lineage construction with spatiotemporal context
-
Li K, Chen M, Kanade T, (2007) Cell population tracking and lineage construction with spatiotemporal context. Med Image Comput Comput Assist Interv 10: 295-302.
-
(2007)
Med Image Comput Comput Assist Interv
, vol.10
, pp. 295-302
-
-
Li, K.1
Chen, M.2
Kanade, T.3
-
118
-
-
33645963133
-
Multiple particle tracking in 3-D+t microscopy: method and application to the tracking of endocytosed quantum dots
-
Genovesio A, Liedl T, Emiliani V, Parak WJ, Coppey-Moisan M, et al. (2006) Multiple particle tracking in 3-D+t microscopy: method and application to the tracking of endocytosed quantum dots. IEEE Trans Image Process 15: 1062-1070.
-
(2006)
IEEE Trans Image Process
, vol.15
, pp. 1062-1070
-
-
Genovesio, A.1
Liedl, T.2
Emiliani, V.3
Parak, W.J.4
Coppey-Moisan, M.5
-
119
-
-
34548409171
-
Rao-blackwellized marginal particle filtering for multiple object tracking in molecular bioimaging
-
Kerkrade, The Netherlands: Springer-Verlag
-
Smal I, Draegestein K, Galjart N, Niessen W, Meijering E (2007) Rao-blackwellized marginal particle filtering for multiple object tracking in molecular bioimaging. Proceedings of the 20th International Conference on Information Processing in Medical Imaging. Kerkrade, The Netherlands: Springer-Verlag.
-
(2007)
Proceedings of the 20th International Conference on Information Processing in Medical Imaging
-
-
Smal, I.1
Draegestein, K.2
Galjart, N.3
Niessen, W.4
Meijering, E.5
-
121
-
-
36349034009
-
-
12-15 April 2007
-
Godinez WJ, Lampe M, Worz S, Muller B, Eils R, et al. (2007) Tracking of virus particles in time-lapse fluorescence microscopy image sequences. 12-15 April 2007. pp. 256-259.
-
(2007)
Tracking of virus particles in time-lapse fluorescence microscopy image sequences
, pp. 256-259
-
-
Godinez, W.J.1
Lampe, M.2
Worz, S.3
Muller, B.4
Eils, R.5
-
122
-
-
79958158724
-
The FARSIGHT trace editor: an open source tool for 3-D inspection and efficient pattern analysis aided editing of automated neuronal reconstructions
-
Luisi J, Narayanaswamy A, Galbreath Z, Roysam B, (2011) The FARSIGHT trace editor: an open source tool for 3-D inspection and efficient pattern analysis aided editing of automated neuronal reconstructions. Neuroinformatics 9: 305-315.
-
(2011)
Neuroinformatics
, vol.9
, pp. 305-315
-
-
Luisi, J.1
Narayanaswamy, A.2
Galbreath, Z.3
Roysam, B.4
-
123
-
-
77950679704
-
V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets
-
Peng H, Ruan Z, Long F, Simpson JH, Myers EW, (2010) V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets. Nat Biotechnol 28: 348-353.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 348-353
-
-
Peng, H.1
Ruan, Z.2
Long, F.3
Simpson, J.H.4
Myers, E.W.5
-
124
-
-
0030213052
-
Texture features for browsing and retrieval of image data
-
Manjunath B, Ma W, (1996) Texture features for browsing and retrieval of image data. IEEE Trans Pattern Anal Mach Intell 18: 837-842.
-
(1996)
IEEE Trans Pattern Anal Mach Intell
, vol.18
, pp. 837-842
-
-
Manjunath, B.1
Ma, W.2
-
125
-
-
85032752151
-
Informatics challenges of high-throughput microscopy
-
Zhou X, Wong STC, (2006) Informatics challenges of high-throughput microscopy. IEEE Signal Processing Magazine 23: 63-72.
-
(2006)
IEEE Signal Processing Magazine
, vol.23
, pp. 63-72
-
-
Zhou, X.1
Wong, S.T.C.2
-
126
-
-
33645326241
-
Automated segmentation, classification, and tracking of cancer cell nuclei in time-lapse microscopy
-
Chen X, Zhou X, Wong ST, (2006) Automated segmentation, classification, and tracking of cancer cell nuclei in time-lapse microscopy. IEEE Trans Biomed Eng 53: 762-766.
-
(2006)
IEEE Trans Biomed Eng
, vol.53
, pp. 762-766
-
-
Chen, X.1
Zhou, X.2
Wong, S.T.3
-
127
-
-
0036139314
-
A neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of HeLa cells
-
Boland M, Murphy R, (2001) A neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of HeLa cells. Bioinformatics 17: 1213-1223.
-
(2001)
Bioinformatics
, vol.17
, pp. 1213-1223
-
-
Boland, M.1
Murphy, R.2
-
128
-
-
0018466704
-
Statistical and structural approaches to texture
-
Haralick R, (1979) Statistical and structural approaches to texture. Proceedings of IEEE 67: 786-804.
-
(1979)
Proceedings of IEEE
, vol.67
, pp. 786-804
-
-
Haralick, R.1
-
131
-
-
33747113980
-
Beugungstheorie des schneidencerfarhens undseiner verbesserten form, der phasenkontrastmethode
-
Zernike F, (1934) Beugungstheorie des schneidencerfarhens undseiner verbesserten form, der phasenkontrastmethode. Physica 1: 689-704.
-
(1934)
Physica
, vol.1
, pp. 689-704
-
-
Zernike, F.1
-
132
-
-
0015680481
-
Textural features for image classification
-
Haralick RM, Shanmugam K, Dinstein I, (1973) Textural features for image classification. IEEE Transactions on Systems, Man and Cybernetics 6: 610-620.
-
(1973)
IEEE Transactions on Systems, Man and Cybernetics
, vol.6
, pp. 610-620
-
-
Haralick, R.M.1
Shanmugam, K.2
Dinstein, I.3
-
133
-
-
70350714427
-
Automatic analysis of dividing cells in live cell movies to detect mitotic delays and correlate phenotypes in time
-
Harder N, Mora-Bermudez F, Godinez WJ, Wunsche A, Eils R, et al. (2009) Automatic analysis of dividing cells in live cell movies to detect mitotic delays and correlate phenotypes in time. Genome Res 19: 2113-2124.
-
(2009)
Genome Res
, vol.19
, pp. 2113-2124
-
-
Harder, N.1
Mora-Bermudez, F.2
Godinez, W.J.3
Wunsche, A.4
Eils, R.5
-
134
-
-
84863203974
-
Unsupervised modeling of cell morphology dynamics for time-lapse microscopy
-
Zhong Q, Busetto AG, Fededa JP, Buhmann JM, Gerlich DW, (2012) Unsupervised modeling of cell morphology dynamics for time-lapse microscopy. Nat Methods 9: 711-713.
-
(2012)
Nat Methods
, vol.9
, pp. 711-713
-
-
Zhong, Q.1
Busetto, A.G.2
Fededa, J.P.3
Buhmann, J.M.4
Gerlich, D.W.5
-
135
-
-
37549026179
-
Novel cell segmentation and online SVM for cell cycle phase identification in automated microscopy
-
Wang M, Zhou X, Li F, Huckins J, King WR, et al. (2008) Novel cell segmentation and online SVM for cell cycle phase identification in automated microscopy. Bioinformatics 24: 94-101.
-
(2008)
Bioinformatics
, vol.24
, pp. 94-101
-
-
Wang, M.1
Zhou, X.2
Li, F.3
Huckins, J.4
King, W.R.5
-
136
-
-
37749002713
-
Cellular phenotype recognition for high-content RNA interference genome-wide screening
-
Wang J, Zhou X, Bradley PL, Chang SF, Perrimon N, et al. (2008) Cellular phenotype recognition for high-content RNA interference genome-wide screening. J Biomol Screen 13: 29-39.
-
(2008)
J Biomol Screen
, vol.13
, pp. 29-39
-
-
Wang, J.1
Zhou, X.2
Bradley, P.L.3
Chang, S.F.4
Perrimon, N.5
-
137
-
-
36749055295
-
Determining the number of clusters using the weighted gap statistic
-
Yan M, Ye K, (2007) Determining the number of clusters using the weighted gap statistic. Biometrics 63: 1031-1037.
-
(2007)
Biometrics
, vol.63
, pp. 1031-1037
-
-
Yan, M.1
Ye, K.2
-
138
-
-
60549104030
-
Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning
-
Jones TR, Carpenter AE, Lamprecht MR, Moffat J, Silver SJ, et al. (2009) Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning. Proc Natl Acad Sci U S A 106: 1826-1831.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 1826-1831
-
-
Jones, T.R.1
Carpenter, A.E.2
Lamprecht, M.R.3
Moffat, J.4
Silver, S.J.5
-
139
-
-
37249026328
-
Integrating high-content screening and ligand-target prediction to identify mechanism of action
-
Young DW, Bender A, Hoyt J, McWhinnie E, Chirn GW, et al. (2008) Integrating high-content screening and ligand-target prediction to identify mechanism of action. Nat Chem Biol 4: 59-68.
-
(2008)
Nat Chem Biol
, vol.4
, pp. 59-68
-
-
Young, D.W.1
Bender, A.2
Hoyt, J.3
McWhinnie, E.4
Chirn, G.W.5
-
140
-
-
76149094177
-
Systematic image-driven analysis of the spatial Drosophila embryonic expression landscape
-
Frise E, Hammonds AS, Celniker SE, Systematic image-driven analysis of the spatial Drosophila embryonic expression landscape. Mol Syst Biol 6: 345.
-
Mol Syst Biol
, vol.6
, pp. 345
-
-
Frise, E.1
Hammonds, A.S.2
Celniker, S.E.3
-
141
-
-
34250216344
-
Image-based multivariate profiling of drug responses from single cells
-
Loo LH, Wu LF, Altschuler SJ, (2007) Image-based multivariate profiling of drug responses from single cells. Nat Methods 4: 445-453.
-
(2007)
Nat Methods
, vol.4
, pp. 445-453
-
-
Loo, L.H.1
Wu, L.F.2
Altschuler, S.J.3
-
142
-
-
77952474987
-
Cellular heterogeneity: do differences make a difference?
-
Altschuler SJ, Wu LF, (2010) Cellular heterogeneity: do differences make a difference? Cell 141: 559-563.
-
(2010)
Cell
, vol.141
, pp. 559-563
-
-
Altschuler, S.J.1
Wu, L.F.2
-
143
-
-
84876906042
-
-
GE-InCellAnalyzer
-
GE-InCellAnalyzer. http://www.biacore.com/high-content-analysis/index.html.
-
-
-
-
144
-
-
84876917504
-
-
Cellomics
-
Cellomics. http://www.cellomics.com/content/menu/About_Us/.
-
-
-
-
145
-
-
84876888453
-
-
Cellumen
-
Cellumen. http://www.cellumen.com/.
-
-
-
-
146
-
-
84876930862
-
-
MetaXpress
-
MetaXpress. http://www.moleculardevices.com/pages/software/metaxpress.html.
-
-
-
-
147
-
-
84876891635
-
-
BD-Pathway
-
BD-Pathway. http://www.bdbiosciences.ca/bioimaging/cell_biology/pathway/software/.
-
-
-
|