-
1
-
-
0037418911
-
Informatics and quantitative analysis in biological imaging
-
DOI 10.1126/science.1082602
-
Swedlow, J.R., Goldberg, I., Brauner, E. & Sorger, P.K. Informatics and quantitative analysis in biological imaging. Science 300, 100-102 (2003). (Pubitemid 36423035)
-
(2003)
Science
, vol.300
, Issue.5616
, pp. 100-102
-
-
Swedlow, J.R.1
Goldberg, I.2
Brauner, E.3
Sorger, P.K.4
-
2
-
-
77954196544
-
Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model
-
Peng, H., Ruan, Z., Atasoy, D. & Sternson, S. Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model. Bioinformatics 26, i38-i46 (2010).
-
(2010)
Bioinformatics
, vol.26
-
-
Peng, H.1
Ruan, Z.2
Atasoy, D.3
Sternson, S.4
-
3
-
-
78650120369
-
Gene expression divergence recapitulates the developmental hourglass model
-
Kalinka, A.T. et al. Gene expression divergence recapitulates the developmental hourglass model. Nature 468, 811-814 (2010).
-
(2010)
Nature
, vol.468
, pp. 811-814
-
-
Kalinka, A.T.1
-
4
-
-
1942470024
-
Design and Validation of a Tool for Neurite Tracing and Analysis in Fluorescence Microscopy Images
-
Meijering, E. et al. Design and validation of a tool for neurite tracing and analysis in fluorescence microscopy images. Cytometry A 58, 167-176 (2004). (Pubitemid 38509178)
-
(2004)
Cytometry Part A
, vol.58
, Issue.2
, pp. 167-176
-
-
Meijering, E.1
Jacob, M.2
Sarria, J.-C.F.3
Steiner, P.4
Hirling, H.5
Unser, M.6
-
5
-
-
85032751072
-
On the digital trail of mobile cells
-
Zimmer, C. et al. On the digital trail of mobile cells. IEEE Signal Process. Mag. 23, 54-62 (2006).
-
(2006)
IEEE Signal Process. Mag.
, vol.23
, pp. 54-62
-
-
Zimmer, C.1
-
6
-
-
65549140197
-
Tracking algorithms chase down pathogens
-
Chenouard, N., Dufour, A. & Olivo-Marin, J.-C. Tracking algorithms chase down pathogens. Biotechnol. J. 4, 838-845 (2009).
-
(2009)
Biotechnol. J.
, vol.4
, pp. 838-845
-
-
Chenouard, N.1
Dufour, A.2
Olivo-Marin, J.-C.3
-
7
-
-
58149108944
-
Introduction: Reproducible research
-
Fomel, S. & Claerbout, J. Introduction: reproducible research. Comput. Sci. Eng. 11, 5-7 (2009).
-
(2009)
Comput. Sci. Eng.
, vol.11
, pp. 5-7
-
-
Fomel, S.1
Claerbout, J.2
-
8
-
-
84857392540
-
The case for open computer programs
-
Ince, D.C., Hatton, L. & Graham-Cumming, J. The case for open computer programs. Nature 482, 485-488 (2012).
-
(2012)
Nature
, vol.482
, pp. 485-488
-
-
Ince, D.C.1
Hatton, L.2
Graham-Cumming, J.3
-
9
-
-
85032750960
-
Reproducible research in signal processing-what, why, and how
-
Vandewalle, P., Kovacevic, J. & Vetterli, M. Reproducible research in signal processing-what, why, and how. IEEE Signal Process. Mag. 26, 37-47 (2009).
-
(2009)
IEEE Signal Process. Mag.
, vol.26
, pp. 37-47
-
-
Vandewalle, P.1
Kovacevic, J.2
Vetterli, M.3
-
10
-
-
84863393849
-
OMERO: Flexible, model-driven data management for experimental biology
-
Allan, C. et al. OMERO: flexible, model-driven data management for experimental biology. Nat. Methods 9, 245-253 (2012).
-
(2012)
Nat. Methods
, vol.9
, pp. 245-253
-
-
Allan, C.1
-
11
-
-
33744981623
-
Image processing with image
-
Abramoff, M.D., Magalhaes, P.J. & Ram, S.J. Image Processing with ImageJ. Biophotonics Int. 11, 36-42 (2004).
-
(2004)
J. Biophotonics Int.
, vol.11
, pp. 36-42
-
-
Abramoff, M.D.1
Magalhaes, P.J.2
Ram, S.J.3
-
12
-
-
84862520770
-
Fiji: An open-source platform for biological-image analysis
-
Schindelin, J. et al. Fiji: an open-source platform for biological-image analysis. Nat. Methods 9, 676-682 (2012).
-
(2012)
Nat. Methods
, vol.9
, pp. 676-682
-
-
Schindelin, J.1
-
13
-
-
33845792555
-
CellProfiler: Image analysis software for identifying and quantifying cell phenotypes
-
Carpenter, A.E. et al. CellProfiler: image analysis software for identifying and quantifying cell phenotypes. Genome Biol. 7, R100 (2006).
-
(2006)
Genome Biol.
, vol.7
-
-
Carpenter, A.E.1
-
14
-
-
84863204506
-
BioImageXD: An open, general-purpose and high-throughput image-processing platform
-
Kankaanpää, P. et al. BioImageXD: an open, general-purpose and high-throughput image-processing platform. Nat. Methods 9, 683-689 (2012).
-
(2012)
Nat. Methods
, vol.9
, pp. 683-689
-
-
Kankaanpää, P.1
-
15
-
-
0036721668
-
Extraction of spots in biological images using multiscale products
-
DOI 10.1016/S0031-3203(01)00127-3, PII S0031320301001273
-
Olivo-Marin, J.-C. Extraction of spots in biological images using multiscale products. Pattern Recognit. 35, 1989-1996 (2002). (Pubitemid 34776311)
-
(2002)
Pattern Recognition
, vol.35
, Issue.9
, pp. 1989-1996
-
-
Olivo-Marin, J.-C.1
-
16
-
-
33745001795
-
SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope
-
DOI 10.1038/nature04752, PII N04752
-
Cabal, G. et al. SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope. Nature 441, 770-773 (2006). (Pubitemid 43865225)
-
(2006)
Nature
, vol.441
, Issue.7094
, pp. 770-773
-
-
Cabal, G.G.1
Genovesio, A.2
Rodriguez-Navarro, S.3
Zimmer, C.4
Gadal, O.5
Lesne, A.6
Buc, H.7
Feuerbach-Fournier, F.8
Olivo-Marin, J.-C.9
Hurt, E.C.10
Nehrbass, U.11
-
17
-
-
33749838643
-
Olfactory discrimination learning increases the survival of adult-born neurons in the olfactory bulb
-
DOI 10.1523/JNEUROSCI.2633-06.2006
-
Alonso, M. et al. Olfactory discrimination learning increases the survival of adult-born neurons in the olfactory bulb. J. Neurosci. 26, 10508-10513 (2006). (Pubitemid 44564601)
-
(2006)
Journal of Neuroscience
, vol.26
, Issue.41
, pp. 10508-10513
-
-
Alonso, M.1
Viollet, C.2
Gabellec, M.-M.3
Meas-Yedid, V.4
Olivo-Marin, J.-C.5
Lledo, P.-M.6
-
18
-
-
77958115065
-
Pak1 phosphorylation enhances cortactin-N-WASP interaction in clathrin-caveolin-independent endocytosis
-
Grassart, A. et al. Pak1 phosphorylation enhances cortactin-N-WASP interaction in clathrin-caveolin-independent endocytosis. Traffic 11, 1079-1091 (2010).
-
(2010)
Traffic
, vol.11
, pp. 1079-1091
-
-
Grassart, A.1
-
19
-
-
33645963133
-
Multiple particle tracking in 3D+t microscopy: Method and application to the tracking of endocytozed quantum dots
-
Genovesio, A. et al. Multiple particle tracking in 3D+t microscopy: method and application to the tracking of endocytozed quantum dots. IEEE Trans. Image Process. 15, 1062-1070 (2006).
-
(2006)
IEEE Trans. Image Process.
, vol.15
, pp. 1062-1070
-
-
Genovesio, A.1
-
20
-
-
33749005371
-
Quantitative four-dimensional tracking of cytoplasmic and nuclear HIV-1 complexes
-
DOI 10.1038/nmeth928, PII NMETH928
-
Arhel, N. et al. Quantitative four-dimensional tracking of cytoplasmic and nuclear HIV-1 complexes. Nat. Methods 3, 817-824 (2006). (Pubitemid 44445829)
-
(2006)
Nature Methods
, vol.3
, Issue.10
, pp. 817-824
-
-
Arhel, N.1
Genovesio, A.2
Kim, K.-A.3
Miko, S.4
Perret, E.5
Olivo-Marin, J.-C.6
Shorte, S.7
Charneau, P.8
-
21
-
-
61849178720
-
Prions hijack tunneling nanotubes for intercellular spread
-
Gousset, K. et al. Prions hijack tunneling nanotubes for intercellular spread. Nat. Cell Biol. 11, 328-336 (2009).
-
(2009)
Nat. Cell Biol.
, vol.11
, pp. 328-336
-
-
Gousset, K.1
-
22
-
-
63049129654
-
A dual role for actin and microtubule cytoskeleton in the transport of golgi units from the nurse cells to the oocyte across ring canals
-
Nicolas, E., Chenouard, N., Olivo-Marin, J.-C. & Guichet, A. A dual role for actin and microtubule cytoskeleton in the transport of golgi units from the nurse cells to the oocyte across ring canals. Mol. Biol. Cell 20, 556-568 (2009).
-
(2009)
Mol. Biol. Cell
, vol.20
, pp. 556-568
-
-
Nicolas, E.1
Chenouard, N.2
Olivo-Marin, J.-C.3
Guichet, A.4
-
24
-
-
26444456033
-
Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces
-
DOI 10.1109/TIP.2005.852790
-
Dufour, A. et al. Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces. IEEE Trans. Image Process. 14, 1396-1410 (2005). (Pubitemid 41430901)
-
(2005)
IEEE Transactions on Image Processing
, vol.14
, Issue.9
, pp. 1396-1410
-
-
Dufour, A.1
Shinin, V.2
Tajbakhsh, S.3
Guillen-Aghion, N.4
Olivo-Marin, J.-C.5
Zimmer, C.6
-
25
-
-
79959616747
-
3-D active meshes: Fast discrete deformable models for cell tracking in 3-D time-lapse microscopy
-
Dufour, A., Thibeaux, R., Labruyère, E., Guillén, N. & Olivo-Marin, J.-C. 3-D active meshes: fast discrete deformable models for cell tracking in 3-D time-lapse microscopy. IEEE Trans. Image Process. 20, 1925-1937 (2011).
-
(2011)
IEEE Trans. Image Process.
, vol.20
, pp. 1925-1937
-
-
Dufour, A.1
Thibeaux, R.2
Labruyère, E.3
Guillén, N.4
Olivo-Marin, J.-C.5
-
26
-
-
77954044097
-
Escape of HIV-1-infected dendritic cells from TRAIL-Mediated NK cell cytotoxicity. A pivotal role of HMGB1
-
Melki, M.-T., Saïdi, H., Dufour, A., Olivo-Marin, J.-C. & Gougeon, M.-L. Escape of HIV-1-infected dendritic cells from TRAIL-Mediated NK cell cytotoxicity. A pivotal role of HMGB1. PLoS Pathog. 6, e1000862 (2010).
-
(2010)
PLoS Pathog.
, vol.6
-
-
Melki, M.-T.1
Saïdi, H.2
Dufour, A.3
Olivo-Marin, J.-C.4
Gougeon, M.-L.5
-
27
-
-
31844445839
-
Human tumor necrosis factor is a chemoattractant for the parasite Entamoeba histolytica
-
DOI 10.1128/IAI.74.2.1407-1411.2006
-
Blazquez, S. et al. Human tumor necrosis factor is a chemoattractant for the parasite Entamoeba histolytica. Infect. Immun. 74, 1407-1411 (2006). (Pubitemid 43185584)
-
(2006)
Infection and Immunity
, vol.74
, Issue.2
, pp. 1407-1411
-
-
Blazquez, S.1
Zimmer, C.2
Guigon, G.3
Olivo-Marin, J.-C.4
Guillen, N.5
Labruyere, E.6
-
28
-
-
84859885527
-
Newly visualized fibrillar collagen scaffolds dictate Entamoeba histolytica invasion route in the human colon
-
Thibeaux, R. et al. Newly visualized fibrillar collagen scaffolds dictate Entamoeba histolytica invasion route in the human colon. Cell. Microbiol. 14, 609-621 (2012).
-
(2012)
Cell. Microbiol.
, vol.14
, pp. 609-621
-
-
Thibeaux, R.1
-
29
-
-
84859215768
-
Computerized video analysis of social interactions in mice
-
de Chaumont, F. et al. Computerized video analysis of social interactions in mice. Nat. Methods 9, 410-417 (2012).
-
(2012)
Nat. Methods
, vol.9
, pp. 410-417
-
-
De Chaumont, F.1
|