TLM-tracker: Software for cell segmentation, tracking and lineage analysis in time-lapse microscopy movies

Bioinformatics

Volumn 28, Issue 17, 2012, Pages 2276-2277

  Klein, Johannes ^a   Leupold, Stefan ^a   Biegler, Ilona ^a   Biedendieck, Rebekka ^a   Münch, Richard ^a   Jahn, Dieter ^a  

^a TECHNICAL UNIVERSITY OF BRAUNSCHWEIG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS);

GREEN FLUORESCENT PROTEIN;

ARTICLE; BACILLUS MEGATERIUM; BIOLOGICAL MODEL; BIOSYNTHESIS; CHEMISTRY; COMPUTER PROGRAM; CYTOLOGY; FLUORESCENCE MICROSCOPY; IMAGE PROCESSING; METABOLISM; METHODOLOGY; SINGLE CELL ANALYSIS; THEORETICAL MODEL; TIME LAPSE IMAGING; VIDEO MICROSCOPY;

BACILLUS MEGATERIUM; GREEN FLUORESCENT PROTEINS; IMAGE PROCESSING, COMPUTER-ASSISTED; MICROSCOPY, FLUORESCENCE; MICROSCOPY, VIDEO; MODELS, BIOLOGICAL; MODELS, THEORETICAL; SINGLE-CELL ANALYSIS; SOFTWARE; TIME-LAPSE IMAGING;

EID: 84865555512     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts424     Document Type: Article

References (7)

1. Dubnau, D. and Losick, R. (2006) Bistability in bacteria. Mol. Microbiol., 61, 564-572.
2. Hand, A.J. et al. (2009) Automated tracking of migrating cells in phase-contrast video microscopy sequences using image registration. J. Microsc., 234, 62-79.
3. Locke, J.C.W. and Elowitz, M.B. (2009) Using movies to analyse gene circuit dynamics in single cells. Nat. Rev. Microbiol., 7, 383-392.
4. Meyer, P. and Dworkin, J. (2007) Applications of fluorescence microscopy to single bacterial cells. Res. Microbiol., 158, 187-194.
5. Stammen, S. et al. (2010) High yield intra- and extracellular protein production using Bacillus megaterium. Appl. Environ. Microbiol., 76, 4037-4046.
6. Wu, Q. (2008) Microscope Image Processing. Elsevier Academic Press, New York.
7. Young, J.W. et al. (2012) Measuring single-cell gene expression dynamics in bacteria using fluorescence time-lapse microscopy. Nat. Protoc., 7, 80-88.