AceTree: A tool for visual analysis of Caenorhabditis elegans embryogenesis

BMC Bioinformatics

Volumn 7, Issue , 2006, Pages

  Boyle, Thomas J ^a   Bao, Zhirong ^a   Murray, John I ^a   Araya, Carlos L ^a   Waterston, Robert H ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AUTOMATIC EXTRACTION; BIOLOGICAL SIGNIFICANCE; CAENORHABDITIS ELEGANS; EMBRYONIC DEVELOPMENT; GENE EXPRESSION PATTERNS; INTERFACE PROGRAM; SPACE-FILLING MODELS; TREE REPRESENTATION;

DATA VISUALIZATION; GENE EXPRESSION; JAVA PROGRAMMING LANGUAGE; SOFTWARE PACKAGES; TOOLS; USER INTERFACES;

C (PROGRAMMING LANGUAGE);

GREEN FLUORESCENT PROTEIN; HISTONE; HYBRID PROTEIN;

ARTICLE; AUTOMATION; CAENORHABDITIS ELEGANS; CELL LINEAGE; COMPUTER INTERFACE; COMPUTER PROGRAM; CONTROLLED STUDY; EMBRYO; EMBRYO DEVELOPMENT; GENE EXPRESSION; IMAGING SYSTEM; MUTANT; NONHUMAN; PHENOTYPIC VARIATION; QUANTITATIVE ANALYSIS; TIME; ANIMAL; ANIMAL EMBRYO; BIOLOGY; CHEMISTRY; COMPUTER LANGUAGE; EMBRYOLOGY; MUTATION; PATHOLOGY; PHENOTYPE; PHYLOGENY; PROCEDURES;

CAENORHABDITIS ELEGANS;

ANIMALS; CAENORHABDITIS ELEGANS; CELL LINEAGE; COMPUTATIONAL BIOLOGY; EMBRYO, NONMAMMALIAN; GREEN FLUORESCENT PROTEINS; HISTONES; MUTATION; PHENOTYPE; PHYLOGENY; PROGRAMMING LANGUAGES; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 33745957981     PISSN: 14712105     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-7-275     Document Type: Article

References (13)

1. Sulston JE, Schierenberg E, White JG, Thomson JN: The embronic cell lineage of the nematode Caenorhabditis elegans. Dev Biol 1983, 100:64-119.
2. Bao Z, Murray JI, Boyle T, Ooi SL, Sandel MJ, Waterston JH: Automated Cell Lineage Tracing in Caenorhabditis elegans PNAS. 2006, 103(8):2707-2712. February 21, 10.1073/pnas.0511111103
3. Schnabel R, Hutter H, Moerman D, Schnabel H: Assessing normal embryogenesis in Caenorhabditis elegans. Dev Biol 1997, 184:234-265.
4. Martinelli SD, Brown CG, Durbin R: Gene expression and development databases for C. elegans. Semin Cell Dev Biol 1997, 8(5):459-67.
5. Johan Koch: Virtual Wormbase, User Manual johan.kochβiosci.ki.se. 2005 [http://celegans.sh.se/vwbase/]. 23rd June 2005
6. Rasband W: ImageJ: Image Processing and Analysis in Java. [http://rsb.info.nih.gov/ij/index.html].
7. Shavor S, D'Anjou J, Fairbrother S, Kehn D, Kellerman J, McCarthy P: The Java Developer's Guide to Eclipse. Addison Wesley Professional 2003. ISBN:0342259640.
8. Eclipse Platform 2004 [http://www.eclipse.org/].
9. The Apache Software Foundation: Apache Ant 1.6.2 Manual. 2004.
10. Kaletta T, Schnabel H, Schnabel R: Binary specification of the embryonic lineage in Caenorhabditis elegans. Nature 1997, 390:294-298.
11. Azzaria M, Goszczynski B, Chung MA, Kalb JM, McGhee JD: A fork head/ HNF-3 homolog expressed in the pharynx and intestine of the Caenorhabditis elegans embryo. Dev Biol 2001, 178:289-303.
12. Saldanha AJ: Java Treeview-extensible visualization of micro-array data. Bioinformatics 20(17):3246-8. 2004 Nov 22
13. Rees CA, Demeter J, Matese JC, Botstein D, Sherlock G: GeneXplorer: an interactive web application for microarray data visualization and analysis. BMC Bioinformatics 5:141. 2004 Oct 1