메뉴 건너뛰기




Volumn 19, Issue 11, 2009, Pages 2113-2124

Automatic analysis of dividing cells in live cell movies to detect mitotic delays and correlate phenotypes in time

Author keywords

[No Author keywords available]

Indexed keywords

NOCODAZOLE; RNA;

EID: 70350714427     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.092494.109     Document Type: Article
Times cited : (58)

References (40)
  • 1
    • 0036139314 scopus 로고    scopus 로고
    • A neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of HeLa cells
    • Boland MV, Murphy RF. 2001. A neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of HeLa cells. Bioinformatics 17: 1213-1223.
    • (2001) Bioinformatics , vol.17 , pp. 1213-1223
    • Boland, M.V.1    Murphy, R.F.2
  • 2
    • 0032212323 scopus 로고    scopus 로고
    • Automated recognition of patterns characteristic of subcellular structures in fluorescence microscopy images
    • Boland MV, Markey MK, Murphy RF. 1998. Automated recognition of patterns characteristic of subcellular structures in fluorescence microscopy images. Cytometry 33: 366-375.
    • (1998) Cytometry , vol.33 , pp. 366-375
    • Boland, M.V.1    Markey, M.K.2    Murphy, R.F.3
  • 4
    • 33645326241 scopus 로고    scopus 로고
    • Automated segmentation, classification, and tracking of cancer cell nuclei in time-lapse microscopy
    • Chen X, Zhou X, Wong S. 2006. Automated segmentation, classification, and tracking of cancer cell nuclei in time-lapse microscopy. IEEE Trans Biomed Eng 53: 762-766.
    • (2006) IEEE Trans Biomed Eng , vol.53 , pp. 762-766
    • Chen, X.1    Zhou, X.2    Wong, S.3
  • 5
    • 34547830883 scopus 로고    scopus 로고
    • Automated image analysis of protein localization in budding yeast
    • DOI 10.1093/bioinformatics/btm206
    • Chen S, Zhao T, Gordon G, Murphy R. 2007. Automated image analysis of protein localization in budding yeast. Bioinformatics 23: i66-i71. (Pubitemid 47244387)
    • (2007) Bioinformatics , vol.23 , Issue.13
    • Chen, S.-C.1    Zhao, T.2    Gordon, G.J.3    Murphy, R.F.4
  • 6
    • 57249097044 scopus 로고    scopus 로고
    • Automated 5-D analysis of cell migration and interaction in the thymic cortex from time-lapse sequences of 3-D multi-channel multi-photon images
    • Chen Y, Ladi E, Herzmark P, Robey E, Roysam B. 2009. Automated 5-D analysis of cell migration and interaction in the thymic cortex from time-lapse sequences of 3-D multi-channel multi-photon images. J Immunol Methods 340: 65-80.
    • (2009) J Immunol Methods , vol.340 , pp. 65-80
    • Chen, Y.1    Ladi, E.2    Herzmark, P.3    Robey, E.4    Roysam, B.5
  • 9
    • 0345363151 scopus 로고    scopus 로고
    • Mini spindles: A gene encoding a conserved microtubule-associated protein required for the integrity of the mitotic spindle in Drosophila
    • DOI 10.1083/jcb.146.5.1005
    • Cullen CF, Deák P, Glover DM, Ohkura H. 1999. mini spindles: A gene encoding a conserved microtubule-associated protein required for the integrity of the mitotic spindle in Drosophila. J Cell Biol 146: 1005-1018. (Pubitemid 29430443)
    • (1999) Journal of Cell Biology , vol.146 , Issue.5 , pp. 1005-1018
    • Cullen, C.F.1    Deak, P.2    Glover, D.M.3    Ohkura, H.4
  • 11
    • 53049092388 scopus 로고    scopus 로고
    • A fast, fully automated cell segmentation algorithm for high-throughput and high-content screening
    • Fenistein D, Lenseigne B, Christophe T, Brodin P, Genovesio A. 2008. A fast, fully automated cell segmentation algorithm for high-throughput and high-content screening. Cytometry A 73: 958-964.
    • (2008) Cytometry A , vol.73 , pp. 958-964
    • Fenistein, D.1    Lenseigne, B.2    Christophe, T.3    Brodin, P.4    Genovesio, A.5
  • 12
    • 0023589342 scopus 로고
    • A microtubule-associated protein from Xenopus eggs that specifically promotes assembly at the plus-end
    • Gard DL, Kirschner MW. 1987. A microtubule-associated protein from Xenopus eggs that specifically promotes assembly at the plus-end. J Cell Biol 105: 2203-2215.
    • (1987) J Cell Biol , vol.105 , pp. 2203-2215
    • Gard, D.L.1    Kirschner, M.W.2
  • 14
    • 33947355325 scopus 로고    scopus 로고
    • Single-cell quantification of molecules and rates using open-source microscope-based cytometry
    • DOI 10.1038/nmeth1008, PII NMETH1008
    • Gordon A, Colman-Lerner A, Chin T, Benjamin K, Yu R, Brent R. 2007. Single-cell quantification of molecules and rates using open-source microscope-based cytometry. Nat Methods 4: 175-181. (Pubitemid 46454687)
    • (2007) Nature Methods , vol.4 , Issue.2 , pp. 175-181
    • Gordon, A.1    Colman-Lerner, A.2    Chin, T.E.3    Benjamin, K.R.4    Yu, R.C.5    Brent, R.6
  • 15
    • 34247468356 scopus 로고    scopus 로고
    • Genes required for mitotic spindle assembly in Drosophila S2 cells
    • DOI 10.1126/science.1141314
    • Goshima G, Wollman R, Goodwin S, Zhang N, Scholey J, Vale R, Stuurman N. 2007. Genes required for mitotic spindle assembly in Drosophila S2 cells. Science 316: 417-421. (Pubitemid 46651486)
    • (2007) Science , vol.316 , Issue.5823 , pp. 417-421
    • Goshima, G.1    Wollman, R.2    Goodwin, S.S.3    Zhang, N.4    Scholey, J.M.5    Vale, R.D.6    Stuurman, N.7
  • 16
    • 34147187876 scopus 로고    scopus 로고
    • Fast automated cell phenotype image classification
    • DOI 10.1186/1471-2105-8-110
    • Hamilton N, Pantelic R, Hanson K, Teasdale R. 2007. Fast automated cell phenotype image classification. BMC Bioinformatics 8: 110. doi: 10.1186/1471-2105-8-110. (Pubitemid 46564013)
    • (2007) BMC Bioinformatics , vol.8 , pp. 110
    • Hamilton, N.A.1    Pantelic, R.S.2    Hanson, K.3    Teasdale, R.D.4
  • 18
    • 13444302537 scopus 로고    scopus 로고
    • Distinct functions of condensin I and II in mitotic chromosome assembly
    • DOI 10.1242/jcs.01604
    • Hirota T, Gerlich D, Koch B, Ellenberg J, Peters JM. 2004. Distinct functions of condensin I and II in mitotic chromosome assembly. J Cell Sci 117: 6435-6445. (Pubitemid 40214569)
    • (2004) Journal of Cell Science , vol.117 , Issue.26 , pp. 6435-6445
    • Hirota, T.1    Gerlich, D.2    Koch, B.3    Ellenberg, J.4    Peters, J.-M.5
  • 19
    • 13344280993 scopus 로고    scopus 로고
    • Boosting accuracy of automated classification of fluorescence microscope images for location proteomics
    • DOI 10.1186/1471-2105-5-78
    • Huang K, Murphy R. 2004. Boosting accuracy of automated classification of fluorescence microscope images for location proteomics. BMC Bioinformatics 5: 78. doi: 10.1186/1471-2105-5-78. (Pubitemid 40198139)
    • (2004) BMC Bioinformatics , vol.5 , pp. 78
    • Huang, K.1    Murphy, R.F.2
  • 22
    • 0347988265 scopus 로고    scopus 로고
    • Image analysis for automatic segmentation of cytoplasms and classification of Rac1 activation
    • Lindblad J, Wählby C, Bengtsson E, Zaltsman A. 2003. Image analysis for automatic segmentation of cytoplasms and classification of Rac1 activation. Cytometry A 57: 22-33.
    • (2003) Cytometry A , vol.57 , pp. 22-33
    • Lindblad, J.1    Wählby, C.2    Bengtsson, E.3    Zaltsman, A.4
  • 23
    • 34250216344 scopus 로고    scopus 로고
    • Image-based multivariate profiling of drug responses
    • Loo L-H, Wu L, Altschuler S. 2007. Image-based multivariate profiling of drug responses. Nat Methods 4: 445-453.
    • (2007) Nat Methods , vol.4 , pp. 445-453
    • Loo, L.-H.1    Wu, L.2    Altschuler, S.3
  • 24
    • 33845633397 scopus 로고    scopus 로고
    • Measuring structural dynamics of chromosomes in living cells by fluorescence microscopy
    • Mora-Bermúdez F, Ellenberg J. 2007. Measuring structural dynamics of chromosomes in living cells by fluorescence microscopy. Methods 41: 158-167.
    • (2007) Methods , vol.41 , pp. 158-167
    • Mora-Bermúdez, F.1    Ellenberg, J.2
  • 25
    • 34247333444 scopus 로고    scopus 로고
    • The spindle-assembly checkpoint in space and time
    • Musacchio A, Salmon ED. 2007. The spindle-assembly checkpoint in space and time. Nat Rev Mol Cell Biol 8: 379-393.
    • (2007) Nat Rev Mol Cell Biol , vol.8 , pp. 379-393
    • Musacchio, A.1    Salmon, E.D.2
  • 27
    • 0018306059 scopus 로고
    • A threshold selection method from grey level histograms
    • Otsu N. 1979. A threshold selection method from grey level histograms. IEEE Trans Syst Man Cybern 9: 62-66.
    • (1979) IEEE Trans Syst Man Cybern , vol.9 , pp. 62-66
    • Otsu, N.1
  • 28
    • 57049136583 scopus 로고    scopus 로고
    • Spatio-temporal cell cycle phase analysis using level sets and fast marching methods
    • Padfield D, Rittscher J, Thomas N, Roysam B. 2009. Spatio-temporal cell cycle phase analysis using level sets and fast marching methods. Med Image Anal 13: 143-155.
    • (2009) Med Image Anal , vol.13 , pp. 143-155
    • Padfield, D.1    Rittscher, J.2    Thomas, N.3    Roysam, B.4
  • 30
    • 34548515317 scopus 로고    scopus 로고
    • Comparison of quantitative methods for cell-shape analysis
    • DOI 10.1111/j.1365-2818.2007.01799.x
    • Pincus Z, Theriot JA. 2007. Comparison of quantitative methods for cellshape analysis. J Microsc 227: 140-156. (Pubitemid 47372310)
    • (2007) Journal of Microscopy , vol.227 , Issue.2 , pp. 140-156
    • Pincus, Z.1    Theriot, J.A.2
  • 31
    • 7944224713 scopus 로고    scopus 로고
    • Automatic real-time three-dimensional cell tracking by fluorescence microscopy
    • DOI 10.1111/j.0022-2720.2004.01404.x
    • Rabut G, Ellenberg J. 2004. Automatic real-time three-dimensional cell tracking by fluorescence microscopy. J Microsc 216: 131-137. (Pubitemid 39469786)
    • (2004) Journal of Microscopy , vol.216 , Issue.2 , pp. 131-137
    • Rabut, G.1    Ellenberg, J.2
  • 32
    • 0037272440 scopus 로고    scopus 로고
    • A feature set for cytometry on digitized microscopic images
    • Rodenacker K, Bengtsson E. 2003. A feature set for cytometry on digitized microscopic images. Anal Cell Pathol 25: 1-36. (Pubitemid 36188603)
    • (2003) Analytical Cellular Pathology , vol.25 , Issue.1 , pp. 1-36
    • Rodenacker, K.1    Bengtsson, E.2
  • 33
    • 0036624542 scopus 로고    scopus 로고
    • Automated pollen recognition using 3D volume images from fluorescence microscopy
    • DOI 10.1023/A:1020623724584
    • Ronneberger O, Schultz E, Burkhardt H. 2002. Automated pollen recognition using 3D volume images from fluorescence microscopy. Aerobiologia 18: 107-115. (Pubitemid 35285009)
    • (2002) Aerobiologia , vol.18 , Issue.2 , pp. 107-115
    • Ronneberger, O.1    Schultz, E.2    Burkhardt, H.3
  • 37
    • 33847140136 scopus 로고    scopus 로고
    • Context based mixture model for cell phase identification in automated fluorescence microscopy
    • DOI 10.1186/1471-2105-8-32
    • Wang M, Zhou X, King R, Wong S. 2007. Context based mixture model for cell phase identification in automated fluorescence microscopy. BMC Bioinformatics 8: 32. doi: 10.1186/1471-2105-8-32. (Pubitemid 46291501)
    • (2007) BMC Bioinformatics , vol.8 , pp. 32
    • Wang, M.1    Zhou, X.2    King, R.W.3    Wong, S.T.C.4
  • 38
    • 37549026179 scopus 로고    scopus 로고
    • Novel cell segmentation and online SVM for cell cycle phase identification in automated microscopy
    • Wang M, Zhou X, Li F, Huckins J, King R, Wong S. 2008. Novel cell segmentation and online SVM for cell cycle phase identification in automated microscopy. Bioinformatics 24: 94-101.
    • (2008) Bioinformatics , vol.24 , pp. 94-101
    • Wang, M.1    Zhou, X.2    Li, F.3    Huckins, J.4    King, R.5    Wong, S.6
  • 39
    • 17644415317 scopus 로고    scopus 로고
    • RNAi living-cell microarrays for loss-of-function screens in Drosophila melanogaster cells
    • Wheeler D, Bailey S, Guertin D, Carpenter A, Higgins C, Sabatini D. 2004. RNAi living-cell microarrays for loss-of-function screens in Drosophila melanogaster cells. Nat Methods 1: 127-132.
    • (2004) Nat Methods , vol.1 , pp. 127-132
    • Wheeler, D.1    Bailey, S.2    Guertin, D.3    Carpenter, A.4    Higgins, C.5    Sabatini, D.6
  • 40
    • 33744790029 scopus 로고    scopus 로고
    • Cell segmentation, tracking, and mitosis detection using temporal context
    • of LNCS, Springer, New York
    • Yang F, Mackey M, Ianzini F, Gallardo G, Sonka M. 2005. Cell segmentation, tracking, and mitosis detection using temporal context. Proceedings of MICCAI'05, Vol.3749 of LNCS, pp. 302-309. Springer, New York.
    • (2005) Proceedings of MICCAI'05 , vol.3749 , pp. 302-309
    • Yang, F.1    Mackey, M.2    Ianzini, F.3    Gallardo, G.4    Sonka, M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.