-
1
-
-
84875316909
-
-
In, Jürgen Bajorath, ed.; Humana Press
-
Tudor, I. Oprea; Elebeoba E. May; Andrei Leitão Alexander Tropsha. In Chemoinformatics and Computational Chemical Biology, Jürgen Bajorath, ed.; Humana Press, 2011; Vol. 673, pp. 459-672.
-
(2011)
Chemoinformatics and Computational Chemical Biology
, vol.673
, pp. 459-672
-
-
Tudor, I.O.1
May, E.E.2
Leitão, A.3
Tropsha, A.4
-
2
-
-
0036579859
-
-
Borodina, Y.; Filimonov, D.; Poroikov, V. SAR QSAR Environ. Res., 2002, 13, 433-443.
-
(2002)
SAR QSAR Environ. Res.
, vol.13
, pp. 433-443
-
-
Borodina, Y.1
Filimonov, D.2
Poroikov, V.3
-
4
-
-
0842325913
-
Ligand-based structural hypotheses for virtual screening
-
Jain, A. N. Ligand-based structural hypotheses for virtual screening. J. Med. Chem., 2004, 47, 947-461.
-
(2004)
J. Med. Chem.
, vol.47
, pp. 461-947
-
-
Jain, A.N.1
-
5
-
-
77957962930
-
-
Munteanu, C.R.; Fernandez-Blanco, E.; Seoane, J.A.; Izquierdo-Novo, P.; Rodriguez-Fernandez, J. A.; Prieto-Gonzalez, J.M.; Rabunal, J.R.; Pazos, A. Curr. Pharm. Des., 16, 2640-2655.
-
Curr. Pharm. Des.
, vol.16
, pp. 2640-2655
-
-
Munteanu, C.R.1
Fernandez-Blanco, E.2
Seoane, J.A.3
Izquierdo-Novo, P.4
Rodriguez-Fernandez, J.A.5
Prieto-Gonzalez, J.M.6
Rabunal, J.R.7
Pazos, A.8
-
6
-
-
21344453491
-
-
Hassan, S.A.; Gracia, L.; Vasudevan, G.; Steinbach, P.J. Methods Mol. Biol., 2005, 305, 451-492.
-
(2005)
Methods Mol. Biol.
, vol.305
, pp. 451-492
-
-
Hassan, S.A.1
Gracia, L.2
Vasudevan, G.3
Steinbach, P.J.4
-
7
-
-
34548319109
-
Chemogenomic approaches to drug discovery: Similar receptors bind similar ligands
-
Klabunde, T. Chemogenomic approaches to drug discovery: similar receptors bind similar ligands. Br. J. Pharm., 2007, 152, 5-7.
-
(2007)
Br. J. Pharm.
, vol.152
, pp. 5-7
-
-
Klabunde, T.1
-
8
-
-
36048992504
-
-
Bender, A.; Young, D.W.; Jenkinsa, J.L. Serranoc, M.; Mikhailova, D.; Paul, A.C.; Davies, J.W. Comb. Chem. High Throughput Screen., 2007, 10, 719-731.
-
(2007)
Comb. Chem. High Throughput Screen.
, vol.10
, pp. 719-731
-
-
Bender, A.1
Young, D.W.2
Jenkinsa, J.L.3
Serranoc, M.4
Mikhailova, D.5
Paul, A.C.6
Davies, J.W.7
-
10
-
-
1642350394
-
Recent development and application of virtual screening in drug discovery: An overview
-
Tingjun, H.; Xiaojie, X. Recent development and application of virtual screening in drug discovery: an overview. Curr. Pharm. Des., 2004, 10, 1011-1033
-
(2004)
Curr. Pharm. Des.
, vol.10
, pp. 1011-1033
-
-
Tingjun, H.1
Xiaojie, X.2
-
11
-
-
77951745194
-
Genetic bases for glaucoma
-
Fuse, N. Genetic bases for glaucoma. Tohoku J. Exp. Med., 2010, 221, 1-10.
-
(2010)
Tohoku J. Exp. Med.
, vol.221
, pp. 1-10
-
-
Fuse, N.1
-
12
-
-
0038461995
-
Drugs from the deep: Marine natural products as drug candidates
-
Haefner, B. Drugs from the deep: marine natural products as drug candidates. Drug Discov. Today, 2003, 8, 536-544.
-
(2003)
Drug Discov. Today
, vol.8
, pp. 536-544
-
-
Haefner, B.1
-
13
-
-
33644791592
-
The Role and Application of In Silico Docking in Chemical Genomics Research
-
Jongejan, A.; de Graaf, C.; Vermeulen, N.P.; Leurs, R.; de Esch, I.J. The Role and Application of In Silico Docking in Chemical Genomics Research. Methods Mol. Biol., 2005, 310, 63-91.
-
(2005)
Methods Mol. Biol.
, vol.310
, pp. 63-91
-
-
Jongejan, A.1
de Graaf, C.2
Vermeulen, N.P.3
Leurs, R.4
de Esch, I.J.5
-
15
-
-
20844451562
-
An automated PLS search for biologically relevant QSAR descriptors
-
Olah, M.; Bologa, C.; Oprea, T.I. An automated PLS search for biologically relevant QSAR descriptors. J. Comput. Aided Mol. Des., 2004, 18, 437-49.
-
(2004)
J. Comput. Aided Mol. Des.
, vol.18
, pp. 437-449
-
-
Olah, M.1
Bologa, C.2
Oprea, T.I.3
-
16
-
-
1342263835
-
High-throughput protein analysis integrating bioinformatics and experimental assays
-
del Val, C.; Mehrle, A.; Falkenhahn, M.; Seiler, M.; Glatting, K.H.; Poustka, A.; Suhai, S.; Wiemann, S. High-throughput protein analysis integrating bioinformatics and experimental assays. Nucleic Acids Res., 2004, 32, 742-748.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 742-748
-
-
del Val, C.1
Mehrle, A.2
Falkenhahn, M.3
Seiler, M.4
Glatting, K.H.5
Poustka, A.6
Suhai, S.7
Wiemann, S.8
-
17
-
-
0042034151
-
A new method to estimate ligand-receptor energetics
-
Bock, J.R.; Gough, D.A. A new method to estimate ligand-receptor energetics. Mol. Cell Proteomics, 2002, 1, 904-910.
-
(2002)
Mol. Cell Proteomics
, vol.1
, pp. 904-910
-
-
Bock, J.R.1
Gough, D.A.2
-
18
-
-
49649103241
-
Expression of secreted frizzled related protein 1, a Wnt antagonist, in brain, kidney, and skeleton is dispensable for normal embryonic development
-
Brune, T.; Tripti, G.; Sadiq, H.; John, S.; Barry, S. K.; Peter, V.N.B.; Gary S.S.; Jane B.L. Expression of secreted frizzled related protein 1, a Wnt antagonist, in brain, kidney, and skeleton is dispensable for normal embryonic development. J. Cell. Physiol., 2008, 217, 113-126.
-
(2008)
J. Cell. Physiol.
, vol.217
, pp. 113-126
-
-
Brune, T.1
Tripti, G.2
Sadiq, H.3
John, S.4
Barry, S.K.5
Peter, V.N.B.6
Gary, S.S.7
Jane, B.L.8
-
19
-
-
0034765781
-
Natural products as insecticides: The biology, biochemistry and quantitative structure-activity relationships of spinosyns and spinosoids
-
Sparks, T.C.; Crouse, G.D.; Durst, G. Natural products as insecticides: the biology, biochemistry and quantitative structure-activity relationships of spinosyns and spinosoids. Pest Manag. Sci., 2001, 57, 896-905.
-
(2001)
Pest Manag. Sci.
, vol.57
, pp. 896-905
-
-
Sparks, T.C.1
Crouse, G.D.2
Durst, G.3
-
20
-
-
0642272467
-
A bioinformatics-based approach for the prediction and identification of novel proteins potentially involved in phosphorylation signalling pathways
-
Ahn, S.K. A bioinformatics-based approach for the prediction and identification of novel proteins potentially involved in phosphorylation signalling pathways. Int. J. Mol. Med., 2003, 12, 391-397.
-
(2003)
Int. J. Mol. Med.
, vol.12
, pp. 391-397
-
-
Ahn, S.K.1
-
21
-
-
0034866589
-
Cholesterol: Precursor to many lipid disorders
-
Jones, P.H. Cholesterol: precursor to many lipid disorders. Am. J. Manag. Care., 2001, 7, S289-298.
-
(2001)
Am. J. Manag. Care.
, vol.7
-
-
Jones, P.H.1
-
22
-
-
0035908493
-
Blocking oncogenic Ras signaling for cancer therapy
-
Adjei, A.A. Blocking oncogenic Ras signaling for cancer therapy. J. Natl. Cancer Inst., 2001, 93, 1062-1074.
-
(2001)
J. Natl. Cancer Inst.
, vol.93
, pp. 1062-1074
-
-
Adjei, A.A.1
-
23
-
-
0027562122
-
Reinterpreting network measures for models of disease transmission
-
Altmann, M. Reinterpreting network measures for models of disease transmission. Soc. Networks, 1993, 15, 1-17.
-
(1993)
Soc. Networks
, vol.15
, pp. 1-17
-
-
Altmann, M.1
-
24
-
-
33644914996
-
Differential inhibition of Wnt-3a by Sfrp-1, Sfrp-2, and Sfrp-3
-
Galli, L.M.; Barnes., T.; Cheng., T.; Acosta., L.; Anglade, A.; Willert, K.; Nusse, R.; Burrus, L.W. Differential inhibition of Wnt-3a by Sfrp-1, Sfrp-2, and Sfrp-3. Developmental Dynamics, 2006, 235, 681-690.
-
(2006)
Developmental Dynamics
, vol.235
, pp. 681-690
-
-
Galli, L.M.1
Barnes, T.2
Cheng, T.3
Acosta, L.4
Anglade, A.5
Willert, K.6
Nusse, R.7
Burrus, L.W.8
-
25
-
-
77955550909
-
Genetic diversity and medicinal drug response in eye care
-
Shastry, B.S. Genetic diversity and medicinal drug response in eye care. Graefe's Arch. Clin. Exp. Ophthalmol., 2010, 248, 1057-1061.
-
(2010)
Graefe's Arch. Clin. Exp. Ophthalmol.
, vol.248
, pp. 1057-1061
-
-
Shastry, B.S.1
-
26
-
-
33744468781
-
Hime WNT/Frizzled signaling in eye development and disease
-
Robb, U.; de Iongh, H.E.A.; Gary, R. Hime WNT/Frizzled signaling in eye development and disease. Front. Biosci., 2006, 11, 2442-2464.
-
(2006)
Front. Biosci.
, vol.11
, pp. 2442-2464
-
-
Robb, U.1
de Iongh, H.E.A.2
Gary, R.3
-
27
-
-
40549098396
-
Increased expression of the WNT antagonist sFRP-1 in glaucoma elevates intraocular pressure
-
Wang., W.-H.; McNatt., L. G.; Pang., I.-H. Increased expression of the WNT antagonist sFRP-1 in glaucoma elevates intraocular pressure J. Clin. Investig., 2008, 118, 1056-1064.
-
(2008)
J. Clin. Investig.
, vol.118
, pp. 1056-1064
-
-
Wang, W.-H.1
McNatt, L.G.2
Pang, I.-H.3
-
28
-
-
0038783316
-
Secreted antagonists of the Wnt signalling pathway
-
Yoshiaki, K.; Robert, K. Secreted antagonists of the Wnt signalling pathway. J. Cell Sci., 2003, 116, 2627-2634.
-
(2003)
J. Cell Sci.
, vol.116
, pp. 2627-2634
-
-
Yoshiaki, K.1
Robert, K.2
-
29
-
-
79251634676
-
Blocking Wnt signaling by SFRP-like molecules inhibits in vivo cell proliferation and tumor growth in cells carrying active β-catenin
-
Lavergne, E.; Hendaoui, I.; Coulouarn, C.; Ribault, C.; Leseur, J.; Eliat, P-A.; Mebarki, S.; Corlu, A.; Clé ment, B.; Musso, O. Blocking Wnt signaling by SFRP-like molecules inhibits in vivo cell proliferation and tumor growth in cells carrying active β-catenin. Oncogene, 2011, 30, 423-433.
-
(2011)
Oncogene
, vol.30
, pp. 423-433
-
-
Lavergne, E.1
Hendaoui, I.2
Coulouarn, C.3
Ribault, C.4
Leseur, J.5
Eliat, P.-A.6
Mebarki, S.7
Corlu, A.8
Clément, B.9
Musso, O.10
-
30
-
-
34247851097
-
Wnt3a binds to several sFRPs in the nanomolar range
-
Wawrzak, D.; Métioui, M.; Willems, E.; Hendrickx, M.; de Genst, E.; Leyns, L. Wnt3a binds to several sFRPs in the nanomolar range. Biochem. Biophys. Res. Commun., 2007, 357, 1119-1123.
-
(2007)
Biochem. Biophys. Res. Commun.
, vol.357
, pp. 1119-1123
-
-
Wawrzak, D.1
Métioui, M.2
Willems, E.3
Hendrickx, M.4
de Genst, E.5
Leyns, L.6
-
31
-
-
30144443247
-
Similarity networks of protein binding sites
-
Zhang, Z.; Grigorov, M.G. Similarity networks of protein binding sites. Proteins, 2006, 62, 470-478.
-
(2006)
Proteins
, vol.62
, pp. 470-478
-
-
Zhang, Z.1
Grigorov, M.G.2
-
32
-
-
42549096546
-
Beyond Wnt inhibition: New functions of secreted Frizzled-related proteins in development and disease
-
Paola Bovolenta; Pilar Esteve; Ruiz;, J.M.; Elsa Cisneros. Beyond Wnt inhibition: new functions of secreted Frizzled-related proteins in development and disease. J. Cell Sci., 2008, 121, 737-746.
-
(2008)
J. Cell Sci.
, vol.121
, pp. 737-746
-
-
Bovolenta, P.1
Esteve, P.2
Ruiz, J.M.3
Cisneros, E.4
-
33
-
-
33744468781
-
WNT/Frizzled signaling in eye development and disease
-
Robb, U.d.I.; Helen, E.A.; Gary, R.H. WNT/Frizzled signaling in eye development and disease. Front. Biosci., 2006, 11, 2442-2464.
-
(2006)
Front. Biosci.
, vol.11
, pp. 2442-2464
-
-
Robb, U.D.I.1
Helen, E.A.2
Gary, R.H.3
-
34
-
-
37749038394
-
Glaucoma is a neuronal disease
-
J Caprioli, R.M. Glaucoma is a neuronal disease. Eye, 2007, 21, S6-S10.
-
(2007)
Eye
, vol.21
-
-
Caprioli, J.R.M.1
-
35
-
-
59449102727
-
Modulation of Wnt signaling through inhibition of secreted frizzled-related protein I (sFRP-1) with N-substituted piperidinyl diphenylsulfonyl sulfonamides
-
Moore, W.J.; Kern, J.C.; Bhat, R.; Thomas, C.J.; Fukayama, S.; Goljer, I.; Krishnamurthy, G.L.R.; Nogle, M.L.; Pitts, K.; Stauffer, B.; Trybulski, E.J.; Welmaker, G.S.; Wilson, M.; Bodine, P.V.N. Modulation of Wnt signaling through inhibition of secreted frizzled-related protein I (sFRP-1) with N-substituted piperidinyl diphenylsulfonyl sulfonamides. J. Med. Chem., 2009, 52, 105-116.
-
(2009)
J. Med. Chem.
, vol.52
, pp. 105-116
-
-
Moore, W.J.1
Kern, J.C.2
Bhat, R.3
Thomas, C.J.4
Fukayama, S.5
Goljer, I.6
Krishnamurthy, G.L.R.7
Nogle, M.L.8
Pitts, K.9
Stauffer, B.10
Trybulski, E.J.11
Welmaker, G.S.12
Wilson, M.13
Bodine, P.V.N.14
-
36
-
-
0037331288
-
Mycaperoxide H, a new cytotoxic norsesterterpene peroxide from a Thai marine sponge Mycale sp
-
Phuwapraisirisan, P.; Matsunaga, S.; Fusetani, N.; Chaitanawisuti, N.; Kritsanapuntu, S.; Menasveta, P. Mycaperoxide H, a new cytotoxic norsesterterpene peroxide from a Thai marine sponge Mycale sp. J. Nat. Prod., 2003, 66, 289-291.
-
(2003)
J. Nat. Prod.
, vol.66
, pp. 289-291
-
-
Phuwapraisirisan, P.1
Matsunaga, S.2
Fusetani, N.3
Chaitanawisuti, N.4
Kritsanapuntu, S.5
Menasveta, P.6
-
37
-
-
24044500970
-
Prediction of protein-protein interactions using distant conservation of sequence patterns and structure relationships
-
Espadaler, J.; Romero-Isart, O.; Jackson, R.M.; Oliva, B. Prediction of protein-protein interactions using distant conservation of sequence patterns and structure relationships. Bioinformatics, 2005, 21, 3360-3368.
-
(2005)
Bioinformatics
, vol.21
, pp. 3360-3368
-
-
Espadaler, J.1
Romero-Isart, O.2
Jackson, R.M.3
Oliva, B.4
-
38
-
-
1642554822
-
A model for NF-kappa B regulation by GSK-3 beta
-
Haefner, B. A model for NF-kappa B regulation by GSK-3 beta. Drug disco. today, 2003, 8(23), 1062-1063.
-
(2003)
Drug disco. today
, vol.8
, Issue.23
, pp. 1062-1063
-
-
Haefner, B.1
-
39
-
-
2942531219
-
Protein structure prediction and analysis as a tool for functional genomics
-
Baker, E.N.; Arcus, V.L.; Lott, J.S. Protein structure prediction and analysis as a tool for functional genomics. Appl. Bioinformatics, 2003, 2, S3-10.
-
(2003)
Appl. Bioinformatics
, vol.2
, pp. 3-10
-
-
Baker, E.N.1
Arcus, V.L.2
Lott, J.S.3
-
40
-
-
0035023445
-
Predicting protein--protein interactions from primary structure
-
Bock, J.R.; Gough, D.A. Predicting protein--protein interactions from primary structure. Bioinformatics, 2001, 17, 455-460.
-
(2001)
Bioinformatics
, vol.17
, pp. 455-460
-
-
Bock, J.R.1
Gough, D.A.2
-
41
-
-
53049097596
-
Hedgehog signaling, epithelial-tomesenchymal transition and miRNA (review)
-
Katoh, Y.; Katoh, M. Hedgehog signaling, epithelial-tomesenchymal transition and miRNA (review). Int. J. Mol. Med., 2008, 22(3), 271-275.
-
(2008)
Int. J. Mol. Med.
, vol.22
, Issue.3
, pp. 271-275
-
-
Katoh, Y.1
Katoh, M.2
-
42
-
-
0026700029
-
Prediction of the structure of a receptor-protein complex using a binary docking method
-
Stoddard, B.L.; Koshland, D.E. Jr. Prediction of the structure of a receptor-protein complex using a binary docking method. Nature, 1992, 358, 774-776.
-
(1992)
Nature
, vol.358
, pp. 774-776
-
-
Stoddard, B.L.1
Koshland Jr., D.E.2
-
43
-
-
22544451519
-
Computational prediction of native protein ligand-binding and enzyme active site sequences
-
Chakrabarti, R.; Klibanov, A.M.; Friesner, R.A. Computational prediction of native protein ligand-binding and enzyme active site sequences. Proc. Natl. Acad. Sci. U S A., 2005, 102, 10153-10158.
-
(2005)
Proc. Natl. Acad. Sci. U S A.
, vol.102
, pp. 10153-10158
-
-
Chakrabarti, R.1
Klibanov, A.M.2
Friesner, R.A.3
-
44
-
-
0346670217
-
Markovian chemicals "in silico" design (MARCH-INSIDE), a promising approach for computer-aided molecular design I: Discovery of anticancer compounds
-
Gonzales-Diaz, H.; Gia, O.; Uriarte, E.; Hernadez, I.; Ramos, R.; Chaviano, M.; Seijo, S.; Castillo, J.A.; Morales, L.; Santana, L.; Akpaloo, D.; Molina, E.; Cruz, M.; Torres, L.A.; Cabrera, M.A. Markovian chemicals "in silico" design (MARCH-INSIDE), a promising approach for computer-aided molecular design I: discovery of anticancer compounds. J. Mol. Model, 2003, 9, 395-407.
-
(2003)
J. Mol. Model
, vol.9
, pp. 395-407
-
-
Gonzales-Diaz, H.1
Gia, O.2
Uriarte, E.3
Hernadez, I.4
Ramos, R.5
Chaviano, M.6
Seijo, S.7
Castillo, J.A.8
Morales, L.9
Santana, L.10
Akpaloo, D.11
Molina, E.12
Cruz, M.13
Torres, L.A.14
Cabrera, M.A.15
-
45
-
-
14944350238
-
A general method for exploiting QSAR models in lead optimization
-
Lewis, R.A. A general method for exploiting QSAR models in lead optimization. J. Med. Chem., 2005, 48, 1638-1648.
-
(2005)
J. Med. Chem.
, vol.48
, pp. 1638-1648
-
-
Lewis, R.A.1
-
47
-
-
0035838976
-
Automated structure-based prediction of functional sites in proteins: Applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking
-
Aloy, P.; Querol, E.; Aviles, F.X.; Sternberg, M.J. Automated structure-based prediction of functional sites in proteins: applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking. J. Mol. Biol., 2001, 311, 395-408.
-
(2001)
J. Mol. Biol.
, vol.311
, pp. 395-408
-
-
Aloy, P.1
Querol, E.2
Aviles, F.X.3
Sternberg, M.J.4
-
48
-
-
0036516054
-
Chem-bioinformatics: Comparative QSAR at the interface between chemistry and biology
-
Hansch, C.; Hoekman, D.; Leo, A.; Weininger, D.; Selassie, C.D. Chem-bioinformatics: comparative QSAR at the interface between chemistry and biology. Chem. Rev., 2002, 102, 783-812.
-
(2002)
Chem. Rev.
, vol.102
, pp. 783-812
-
-
Hansch, C.1
Hoekman, D.2
Leo, A.3
Weininger, D.4
Selassie, C.D.5
-
49
-
-
0037323213
-
Bioinformatics methods to predict protein structure and function. A practical approach
-
Edwards, Y.J.; Cottage, A. Bioinformatics methods to predict protein structure and function. A practical approach. Mol. Biotechnol., 2003, 23, 139-166.
-
(2003)
Mol. Biotechnol.
, vol.23
, pp. 139-166
-
-
Edwards, Y.J.1
Cottage, A.2
-
50
-
-
0021074025
-
Synthesis, biological data and correlation analysis in a set of analgesic drugs
-
Giuliani, E.; Lembo, S.; Sasso, V.; Sorrentino, L.; Silipo, C.; Vittoria, A. Synthesis, biological data and correlation analysis in a set of analgesic drugs. Farmaco Sci., 1983, 38, 847-864.
-
(1983)
Farmaco Sci.
, vol.38
, pp. 847-864
-
-
Giuliani, E.1
Lembo, S.2
Sasso, V.3
Sorrentino, L.4
Silipo, C.5
Vittoria, A.6
-
51
-
-
0036135405
-
In silico ADME/Tox: The state of the art
-
Ekins, S.; Rose, J. In silico ADME/Tox: the state of the art. J. Mol. Graph Model, 2002, 20, 305-309.
-
(2002)
J. Mol. Graph Model
, vol.20
, pp. 305-309
-
-
Ekins, S.1
Rose, J.2
-
52
-
-
13844280973
-
Predicting enzyme family classes by hybridizing gene product composition and pseudo-amino acid composition
-
Cai, Y.D.; Zhou, G.P.; Chou, K.C. Predicting enzyme family classes by hybridizing gene product composition and pseudo-amino acid composition. J. Theor. Biol., 2005, 234, 145-149.
-
(2005)
J. Theor. Biol.
, vol.234
, pp. 145-149
-
-
Cai, Y.D.1
Zhou, G.P.2
Chou, K.C.3
-
53
-
-
21244479779
-
Unveiling the full potential of flexible receptor docking using multiple crystallographic structures
-
Barril, X.; Morley, S.D. Unveiling the full potential of flexible receptor docking using multiple crystallographic structures. J. Med. Chem., 2005, 48, 4432-4443.
-
(2005)
J. Med. Chem.
, vol.48
, pp. 4432-4443
-
-
Barril, X.1
Morley, S.D.2
-
54
-
-
35148838537
-
Drug-target network
-
Yildirim, M.A.; Goh, K.I.; Cusick, M.E.; Barabasi, A. L.; Vidal, M. Drug-target network. Nat. Biotech., 2007, 25, 1119-1126.
-
(2007)
Nat. Biotech.
, vol.25
, pp. 1119-1126
-
-
Yildirim, M.A.1
Goh, K.I.2
Cusick, M.E.3
Barabasi, A.L.4
Vidal, M.5
-
55
-
-
0345824737
-
Network component analysis: Reconstruction of regulatory signals in biological systems
-
Liao, J.C.; Boscolo, R.; Yang, Y.L.; Tran, L.M.; Sabatti, C.; Roychowdhury, V.P. Network component analysis: reconstruction of regulatory signals in biological systems. Proc. Natl. Acad. Sci. U S A., 2003, 100, 15522-15527.
-
(2003)
Proc. Natl. Acad. Sci. U S A.
, vol.100
, pp. 15522-15527
-
-
Liao, J.C.1
Boscolo, R.2
Yang, Y.L.3
Tran, L.M.4
Sabatti, C.5
Roychowdhury, V.P.6
-
56
-
-
79953902085
-
Bioinformatics Analysis of Functional Relations Between CNPs Regions
-
Dave, K.; Banerjee, A. Bioinformatics Analysis of Functional Relations Between CNPs Regions. Current Bioinformatics, 2011, 6, 122-128.
-
(2011)
Current Bioinformatics
, vol.6
, pp. 122-128
-
-
Dave, K.1
Banerjee, A.2
-
57
-
-
33646586050
-
Gene expression: An expression of interest
-
Bonetta, L. Gene expression: an expression of interest. Nature, 2006, 440, 1233-1237.
-
(2006)
Nature
, vol.440
, pp. 1233-1237
-
-
Bonetta, L.1
-
58
-
-
31844449923
-
Gene network shaping of inherent noise spectra
-
Austin, D.W.; Allen, M.S.; McCollum, J.M.; Dar, R.D.; Wilgus, J.R.; Sayler, G.S.; Samatova, N.F.; Cox, C.D.; Simpson, M.L. Gene network shaping of inherent noise spectra. Nature, 2006, 439, 608-611.
-
(2006)
Nature
, vol.439
, pp. 608-611
-
-
Austin, D.W.1
Allen, M.S.2
McCollum, J.M.3
Dar, R.D.4
Wilgus, J.R.5
Sayler, G.S.6
Samatova, N.F.7
Cox, C.D.8
Simpson, M.L.9
-
59
-
-
34547140875
-
The human disease network
-
Goh, K.I.; Cusick, M.E.; Valle, D.; Childs, B.; Vidal, M.; Barabasi, A.L. The human disease network Proc. Natl. Acad. Sci. U S A., 2007, 104, 8685-8690.
-
(2007)
Proc. Natl. Acad. Sci. U S A.
, vol.104
, pp. 8685-8690
-
-
Goh, K.I.1
Cusick, M.E.2
Valle, D.3
Childs, B.4
Vidal, M.5
Barabasi, A.L.6
-
60
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
Kanehisa, M.; Araki, M.; Goto, S.; Hattori, M.; Hirakawa, M.; Itoh, M.; Katayama, T.; Kawashima, S.; Okuda, S.; Tokimatsu, T.; Yamanishi, Y. KEGG for linking genomes to life and the environment. Nucleic Acids Res., 2008, 36, D480-484.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
Hattori, M.4
Hirakawa, M.5
Itoh, M.6
Katayama, T.7
Kawashima, S.8
Okuda, S.9
Tokimatsu, T.10
Yamanishi, Y.11
-
61
-
-
75549090213
-
KEGG for representation and analysis of molecular networks involving diseases and drugs
-
Kanehisa, M.; Goto, S.; Furumichi, M.; Tanabe, M.; Hirakawa, M. KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res., 2010, 38, D355-360.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Kanehisa, M.1
Goto, S.2
Furumichi, M.3
Tanabe, M.4
Hirakawa, M.5
-
62
-
-
2642630755
-
Analysis of ESTdriven gene annotation in human genomic sequence
-
Bailey, L.C., Jr.; Searls, D.B.; Overton, G.C. Analysis of ESTdriven gene annotation in human genomic sequence. Genome Res., 1998, 8, 362-376.
-
(1998)
Genome Res.
, vol.8
, pp. 362-376
-
-
Bailey Jr., L.C.1
Searls, D.B.2
Overton, G.C.3
-
63
-
-
0033957834
-
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
-
Bairoch, A.; Apweiler, R. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res., 2000, 28, 45-48.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 45-48
-
-
Bairoch, A.1
Apweiler, R.2
-
64
-
-
38449101120
-
Integration of biological networks and gene expression data using Cytoscape
-
Cline, M.S.; Smoot, M.; Cerami, E.; Kuchinsky, A.; Landys, N.; Workman, C.; Christmas, R.; Avila-Campilo, I.; Creech, M.; Gross, B.; Hanspers, K.; Isserlin, R.; Kelley, R.; Killcoyne, S.; Lotia, S.; Maere, S.; Morris, J.; Ono, K.; Pavlovic, V.; Pico, A. R.; Vailaya, A.; Wang, P. L.; Adler, A.; Conklin, B. R.; Hood, L.; Kuiper, M.; Sander, C.; Schmulevich, I.; Schwikowski, B.; Warner, G. J.; Ideker, T.; Bader, G. D. Integration of biological networks and gene expression data using Cytoscape. Nat. Protoc., 2007, 2, 2366-2382.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 2366-2382
-
-
Cline, M.S.1
Smoot, M.2
Cerami, E.3
Kuchinsky, A.4
Landys, N.5
Workman, C.6
Christmas, R.7
Avila-Campilo, I.8
Creech, M.9
Gross, B.10
Hanspers, K.11
Isserlin, R.12
Kelley, R.13
Killcoyne, S.14
Lotia, S.15
Maere, S.16
Morris, J.17
Ono, K.18
Pavlovic, V.19
Pico, A.R.20
Vailaya, A.21
Wang, P.L.22
Adler, A.23
Conklin, B.R.24
Hood, L.25
Kuiper, M.26
Sander, C.27
Schmulevich, I.28
Schwikowski, B.29
Warner, G.J.30
Ideker, T.31
Bader, G.D.32
more..
-
67
-
-
4043109757
-
-
Langer, T.; Eder, M.; Hoffmann, R.D.; Chiba, P.; Ecker, G.F. Arch. Pharm. (Weinheim), 2004, 337, 317-327.
-
(2004)
Arch. Pharm. (Weinheim)
, vol.337
, pp. 317-327
-
-
Langer, T.1
Eder, M.2
Hoffmann, R.D.3
Chiba, P.4
Ecker, G.F.5
-
68
-
-
24644519508
-
-
Vedani, A.; Dobler, M.; Lill, M.A. Toxicol. Appl. Pharmacol., 2005, 207, 398-407.
-
(2005)
Toxicol. Appl. Pharmacol.
, vol.207
, pp. 398-407
-
-
Vedani, A.1
Dobler, M.2
Lill, M.A.3
-
69
-
-
0027512594
-
Prevention and treatment of acute graft-vs.-host disease
-
Pietryga, D. Prevention and treatment of acute graft-vs.-host disease. Am. J. Pediatr. Hematol. Oncol., 1993, 15, 28-48.
-
(1993)
Am. J. Pediatr. Hematol. Oncol.
, vol.15
, pp. 28-48
-
-
Pietryga, D.1
-
70
-
-
0036006744
-
Bionformation: Untangling the networks of life
-
Marijuan, P.C. Bionformation: untangling the networks of life. Biosystems, 2002, 64, 111-118.
-
(2002)
Biosystems
, vol.64
, pp. 111-118
-
-
Marijuan, P.C.1
-
72
-
-
33847643207
-
-
Lehar, J.; Zimmermann, G.R.; Krueger, A.S.; Molnar, R.A.; Ledell, J.T.; Heilbut, A.M.; Short, G.F., 3rd; Giusti, L.C.; Nolan, G.P.; Magid, O.A.; Lee, M. S.; Borisy, A.A.; Stockwell, B.R.; Keith, C.T. Mol. Syst. Biol., 2007, 3, 80.
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 80
-
-
Lehar, J.1
Zimmermann, G.R.2
Krueger, A.S.3
Molnar, R.A.4
Ledell, J.T.5
Heilbut, A.M.6
Short III, G.F.7
Giusti, L.C.8
Nolan, G.P.9
Magid, O.A.10
Lee, M.S.11
Borisy, A.A.12
Stockwell, B.R.13
Keith, C.T.14
-
73
-
-
0036228236
-
Knowledge-based selection of targets for structural genomics
-
Frishman, D. knowledge-based selection of targets for structural genomics. Protein Eng., 2002, 15, 169-183.
-
(2002)
Protein Eng.
, vol.15
, pp. 169-183
-
-
Frishman, D.1
-
74
-
-
1842477258
-
Low frequency of myocilin mutations in Indian primary open-angle glaucoma patients
-
Sripriya, S.; Uthra, S.; Sangeetha, R.; George, R.J.; Hemamalini, A.; Paul, P.G.; Amali, J.; Vijaya, L.; Kumaramanickavel, G. Low frequency of myocilin mutations in Indian primary open-angle glaucoma patients. Clin. Genet., 2004, 65, 333-337.
-
(2004)
Clin. Genet.
, vol.65
, pp. 333-337
-
-
Sripriya, S.1
Uthra, S.2
Sangeetha, R.3
George, R.J.4
Hemamalini, A.5
Paul, P.G.6
Amali, J.7
Vijaya, L.8
Kumaramanickavel, G.9
-
75
-
-
0037335001
-
Secondary glaucoma in patients with familial amyloidotic polyneuropathy
-
Kimura, A.; Ando, E.; Fukushima, M.; Koga, T.; Hirata, A.; Arimura, K.; Ando, Y.; Negi, A.; Tanihara, H. Secondary glaucoma in patients with familial amyloidotic polyneuropathy. Arch. Ophthalmol., 2003, 121, 351-356.
-
(2003)
Arch. Ophthalmol.
, vol.121
, pp. 351-356
-
-
Kimura, A.1
Ando, E.2
Fukushima, M.3
Koga, T.4
Hirata, A.5
Arimura, K.6
Ando, Y.7
Negi, A.8
Tanihara, H.9
-
76
-
-
0037664300
-
Characterization of Wnt signaling components and activation of the Wnt canonical pathway in the murine retina
-
Liu, H.; Mohamed, O.; Dufort, D.; Valerie, A.W. Characterization of Wnt signaling components and activation of the Wnt canonical pathway in the murine retina. Developmental Dynamics, 2003, V 227, 323-334.
-
(2003)
Developmental Dynamics
, vol.227
, pp. 323-334
-
-
Liu, H.1
Mohamed, O.2
Dufort, D.3
Valerie, A.W.4
-
77
-
-
0037664300
-
Characterization of Wnt signaling components and activation of the Wnt canonical pathway in the murine retina
-
Liu, H; Mohamed, O; Dufort, D; Wallace, V.A. Characterization of Wnt signaling components and activation of the Wnt canonical pathway in the murine retina. Dev. Dyn., 2003, 227, 323-234.
-
(2003)
Dev. Dyn.
, vol.227
, pp. 234-323
-
-
Liu, H.1
Mohamed, O.2
Dufort, D.3
Wallace, V.A.4
-
78
-
-
33746808398
-
Wnt/beta-catenin signaling in development and disease
-
Clevers., H. Wnt/beta-catenin signaling in development and disease. Cell, 2006, 127, 473-479.
-
(2006)
Cell
, vol.127
, pp. 473-479
-
-
Clevers, H.1
-
79
-
-
4844230621
-
The Frizzled family: Receptors for multiple signal transduction pathways
-
Huang, H-C.; Klein, P. S. The Frizzled family: receptors for multiple signal transduction pathways. Genome Biol., 2004, 234.
-
(2004)
Genome Biol.
, pp. 234
-
-
Huang, H.-C.1
Klein, P.S.2
-
80
-
-
0037821623
-
SFRP1 modulates retina cell differentiation through a beta-catenin-independent mechanism
-
Esteve, P.; Trousse, F.; Rodríguez, J.; Bovolenta, P. SFRP1 modulates retina cell differentiation through a beta-catenin-independent mechanism. J. Cell. Sci., 2003, 116, 2471-2481.
-
(2003)
J. Cell. Sci.
, vol.116
, pp. 2471-2481
-
-
Esteve, P.1
Trousse, F.2
Rodríguez, J.3
Bovolenta, P.4
-
81
-
-
70349969528
-
Wnt modulators, SFRP-1, and SFRP-2 are expressed in osteoblasts and differentially regulate hematopoietic stem cells
-
Nakajima, H.; Itob. M.; Morikawa, Y.; Komori, T.; Fukuchi, Y.; Shibatad, F.; Okamotoa, S.; Kitamurad, T. Wnt modulators, SFRP-1, and SFRP-2 are expressed in osteoblasts and differentially regulate hematopoietic stem cells. Biochem. Biophys. Res. Commun., 2009, 390, 65-70.
-
(2009)
Biochem. Biophys. Res. Commun.
, vol.390
, pp. 65-70
-
-
Nakajima, H.1
Itob, M.2
Morikawa, Y.3
Komori, T.4
Fukuchi, Y.5
Shibatad, F.6
Okamotoa, S.7
Kitamurad, T.8
-
82
-
-
11144322833
-
Expression of Frizzleds and secreted frizzled-related proteins (Sfrps) during mammalian lens development
-
Chen, Y.; Stump, R.J.; Lovicu, F. J; Mc Avoy, J.W. Expression of Frizzleds and secreted frizzled-related proteins (Sfrps) during mammalian lens development. Int. J. Dev. Biol., 2004, 48, 867-877.
-
(2004)
Int. J. Dev. Biol.
, vol.48
, pp. 867-877
-
-
Chen, Y.1
Stump, R.J.2
Lovicu, F.J.3
McAvoy, J.W.4
-
83
-
-
3042610527
-
SFRP1 is required for the proper establishment of the eye field in the medaka fish
-
Esteve, P.; Lopez-Rios, J.; Bovolenta, P. SFRP1 is required for the proper establishment of the eye field in the medaka fish. Mech. Dev., 2004, 121, 687-701.
-
(2004)
Mech. Dev.
, vol.121
, pp. 687-701
-
-
Esteve, P.1
Lopez-Rios, J.2
Bovolenta, P.3
-
84
-
-
33846901103
-
Eye field requires the function of Sfrp1 as a Wnt antagonist
-
Kima, H-S.; Shina, J.; Kima, S.H.; Chuna, H-S.; Kima, J-D.; Kima, Y-S.; Kima, M-J.; Rheeb, M.; Yeoa S-Y.; Huha, T-L. Eye field requires the function of Sfrp1 as a Wnt antagonist. Neurosci. Lett., 2007, 414, 26-29.
-
(2007)
Neurosci. Lett.
, vol.414
, pp. 26-29
-
-
Kima, H.-S.1
Shina, J.2
Kima, S.H.3
Chuna, H.-S.4
Kima, J.-D.5
Kima, Y.-S.6
Kima, M.-J.7
Rheeb, M.8
Yeoa, S.-Y.9
Huha, T.-L.10
-
85
-
-
0032122460
-
Developmental expression patterns of mouse sFRP genes encoding members of the secreted frizzled related protein family
-
Leimeister, C.; Bach, A.; Gessler, M. Developmental expression patterns of mouse sFRP genes encoding members of the secreted frizzled related protein family. Mech. Dev., 1998, 75, 29-42.
-
(1998)
Mech. Dev.
, vol.75
, pp. 29-42
-
-
Leimeister, C.1
Bach, A.2
Gessler, M.3
-
86
-
-
0033523005
-
Developmental expression patterns of mouse sFRP genes encoding members of the secreted frizzled related protein family
-
Bafico, A.; Gazit, A.; Pramila. T.; Paul, W.F.; Yaniv, A.; Stuart, A. Developmental expression patterns of mouse sFRP genes encoding members of the secreted frizzled related protein family. J. Biol. Chem., 1999, 274, 16180-16187.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 16180-16187
-
-
Bafico, A.1
Gazit, A.2
Pramila, T.3
Paul, W.F.4
Yaniv, A.5
Stuart, A.6
-
87
-
-
36849048683
-
Structure-function analysis of secreted frizzled-related protein-1 for its Wnt antagonist function
-
Ramesh, A.B.; Barbara, S.; Barry, S.; K.; Peter V.N. Bodine. Structure-function analysis of secreted frizzled-related protein-1 for its Wnt antagonist function. J. Cell. Biochem., 2007, 102, 1519-1528.
-
(2007)
J. Cell. Biochem.
, vol.102
, pp. 1519-1528
-
-
Ramesh, A.B.1
Barbara, S.2
Barry, S.K.3
Peter, V.N.B.4
-
88
-
-
34547107319
-
WNT signaling pathway and stem cell signaling network
-
Katoh, M.; Katoh, M. WNT signaling pathway and stem cell signaling network. Clin. Cancer Res., 2007, 13, 4042-4045.
-
(2007)
Clin. Cancer Res.
, vol.13
, pp. 4042-4045
-
-
Katoh, M.1
Katoh, M.2
-
89
-
-
0036714307
-
Secreted Frizzled-related proteins: Searching for relationships and patterns
-
Jones, S.E.; Jomary, C. Secreted Frizzled-related proteins: searching for relationships and patterns. BioEssays, 2002, 24, 811-820.
-
(2002)
BioEssays
, vol.24
, pp. 811-820
-
-
Jones, S.E.1
Jomary, C.2
-
90
-
-
0033987712
-
Expression pattern of mouse sFRP-1 and mWnt-8 gene during heart morphogenesis
-
Jaspard, B.; Thierry Couffinhala; Pascale Dufourcqa; Catherine Moreaua; Cécile Duplàaa. Expression pattern of mouse sFRP-1 and mWnt-8 gene during heart morphogenesis. Mech. Dev., 2000, 90, 263-267.
-
(2000)
Mech. Dev.
, vol.90
, pp. 263-267
-
-
Jaspard, B.1
Couffinhala, T.2
Dufourcqa, P.3
Moreaua, C.4
Duplàaa, C.5
-
91
-
-
0030905162
-
A family of secreted proteins contains homology to the cysteine-rich ligandbinding domain of frizzled receptors
-
Amir Rattner; Jen-Chih Hsieh; Philip M. Smallwood; Debra J. Gilbert; Neil G. Copeland; Nancy A. Jenkins; Nathans. A family of secreted proteins contains homology to the cysteine-rich ligandbinding domain of frizzled receptors. J. Proc. Natl. Acad. Sci. USA., 1997, 94, 2859-2863.
-
(1997)
J. Proc. Natl. Acad. Sci. USA.
, vol.94
, pp. 2859-2863
-
-
Rattner, A.1
Hsieh, J.-C.2
Philip, M.3
Smallwood, D.J.G.4
Neil, G.5
Copeland, N.A.6
Jenkins, N.7
-
92
-
-
60849113411
-
The Protein Model Portal
-
Arnold, K.; Florian Kiefer; Jürgen Kopp; James N.D. Battey; Michael Podvinec; John D. Westbrook; Helen M. Berman; L.B.; Schwede, T. The Protein Model Portal. J. Struct. Funct. Genomics., 2009, 10. 1-8
-
(2009)
J. Struct. Funct. Genomics.
, vol.10
, pp. 1-8
-
-
Arnold, K.1
Kiefer, F.2
Kopp, J.3
James, N.D.4
Battey, M.P.5
Westbrook, J.D.6
Berman, H.M.L.B.7
Schwede, T.8
-
93
-
-
0035747672
-
Enhancement of protein modeling by human intervention in applying the automatic programs 3D-JIGSAW and 3D-PSSM
-
Paul, A.B.; Lawrence, A.K.; Robert, M.; Sternberg, M.J.E. Enhancement of protein modeling by human intervention in applying the automatic programs 3D-JIGSAW and 3D-PSSM. Proteins, 2001, 5, 39-46
-
(2001)
Proteins
, vol.5
, pp. 39-46
-
-
Paul, A.B.1
Lawrence, A.K.2
Robert, M.3
Sternberg, M.J.E.4
-
94
-
-
77954293798
-
CPHmodels-3.0--remote homology modeling using structure-guided sequence profiles
-
Nielsen, M.; Lundegaard, C.; Lund, O.; Petersen, T.N. CPHmodels-3.0--remote homology modeling using structure-guided sequence profiles. Nucl. Acids Res., 2010, 38, W576-W581.
-
(2010)
Nucl. Acids Res.
, vol.38
-
-
Nielsen, M.1
Lundegaard, C.2
Lund, O.3
Petersen, T.N.4
-
95
-
-
58149193233
-
The SWISS-MODEL Repository and associated resources
-
Kiefer, F.; Arnold, K.; M. Künzli; Bordoli, L.; Schwed, T. The SWISS-MODEL Repository and associated resources. Nucl. Acids Res., 2009, 37, 387-392.
-
(2009)
Nucl. Acids Res.
, vol.37
, pp. 387-392
-
-
Kiefer, F.1
Arnold, K.2
Künzli, M.B.L.3
Schwed, T.4
-
96
-
-
33747825121
-
(PS)2: Protein structure prediction server
-
Chen, C-C.; Hwang, J-K.; Yang, J-M. (PS)2: protein structure prediction server. Nucl. Acids Res., 2006, 34, W152-W157.
-
(2006)
Nucl. Acids Res.
, vol.34
-
-
Chen, C.-C.1
Hwang, J.-K.2
Yang, J.-M.3
-
97
-
-
9144244232
-
MODBASE, a database of annotated comparative protein structure models, and associated resources
-
Pieper, U.; Eswar, N.; Braberg, H.; Madhusudhan, M. S.; Davis, F.P.; Stuart, A.C.; Mirkovic, N.; Rossi, A.; Marti-Renom, M.A.; Fiser, A.; Webb, B.; Greenblatt, D.; Huang, C.C.; Ferrin, T.E.; Sali, A. MODBASE, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Res., 2004, 32, D217-222.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Pieper, U.1
Eswar, N.2
Braberg, H.3
Madhusudhan, M.S.4
Davis, F.P.5
Stuart, A.C.6
Mirkovic, N.7
Rossi, A.8
Marti-Renom, M.A.9
Fiser, A.10
Webb, B.11
Greenblatt, D.12
Huang, C.C.13
Ferrin, T.E.14
Sali, A.15
-
98
-
-
0036089481
-
MODBASE, a database of annotated comparative protein structure models
-
Pieper, U.; Eswar, N.; Stuart, A.C.; Ilyin, V.A.; Sali, A. MODBASE, a database of annotated comparative protein structure models. Nucleic Acids Res., 2002, 30, 255-259.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 255-259
-
-
Pieper, U.1
Eswar, N.2
Stuart, A.C.3
Ilyin, V.A.4
Sali, A.5
-
99
-
-
29144526714
-
Protein structure prediction: Inroads to biology
-
Petrey, D.; Honig, B. Protein structure prediction: inroads to biology. Mol. Cell, 2005, 20, 811-819.
-
(2005)
Mol. Cell
, vol.20
, pp. 811-819
-
-
Petrey, D.1
Honig, B.2
-
100
-
-
68949213019
-
A generic method for assignment of reliability scores applied to solvent accessibility predictions
-
Bent Petersen; Thomas Nordahl Petersenl; Pernille Andersen Morten Nielsen; Claus Lundegaard. A generic method for assignment of reliability scores applied to solvent accessibility predictions. BMC Struct. Biol., 2009, 9, 1-10.
-
(2009)
BMC Struct. Biol.
, vol.9
, pp. 1-10
-
-
Petersen, B.1
Petersenl, T.N.2
Nielsen, P.A.M.3
Lundegaard, C.4
-
101
-
-
0034990892
-
Sequence-and structure-based protein function prediction from genomic information
-
Baxter, S.M.; Fetrow, J.S. Sequence-and structure-based protein function prediction from genomic information. Curr. Opin. Drug Discov. Devel., 2001, 4, 291-295.
-
(2001)
Curr. Opin. Drug Discov. Devel.
, vol.4
, pp. 291-295
-
-
Baxter, S.M.1
Fetrow, J.S.2
-
103
-
-
16244422643
-
Novel use of chemical shift in NMR as molecular descriptor: A first report on modeling carbonic anhydrase inhibitory activity and related parameters
-
Khadikar, P.V.; Sharma, V.; Karmarkar, S.; Supuran, C.T. Novel use of chemical shift in NMR as molecular descriptor: a first report on modeling carbonic anhydrase inhibitory activity and related parameters. Bioorg. Med. Chem. Lett., 2005, 15, 931-936.
-
(2005)
Bioorg. Med. Chem. Lett.
, vol.15
, pp. 931-936
-
-
Khadikar, P.V.1
Sharma, V.2
Karmarkar, S.3
Supuran, C.T.4
-
104
-
-
0142210126
-
Multiple structural alignment by secondary structures: Algorithm and applications
-
Dror, O.; Benyamini, H.; Nussinov, R.; Wolfson, H. Multiple structural alignment by secondary structures: algorithm and applications. J. Protein Sci., 2003, 12, 2492-2507.
-
(2003)
J. Protein Sci.
, vol.12
, pp. 2492-2507
-
-
Dror, O.1
Benyamini, H.2
Nussinov, R.3
Wolfson, H.4
-
105
-
-
33745076219
-
Advances in homology protein structure modeling
-
Xiang, Z. Advances in homology protein structure modeling. Curr. Protein Pept. Sci., 2006, 7, 217-227.
-
(2006)
Curr. Protein Pept. Sci.
, vol.7
, pp. 217-227
-
-
Xiang, Z.1
-
106
-
-
0028984540
-
Protein docking for low-resolution structures
-
Vakser, I.A. Protein docking for low-resolution structures Protein Eng., 1995, 8, 371-377.
-
(1995)
Protein Eng.
, vol.8
, pp. 371-377
-
-
Vakser, I.A.1
-
107
-
-
0345737133
-
Computational models for predicting the binding affinities of ligands for the wild-type androgen receptor and a mutated variant associated with human prostate cancer
-
Ai, N.; DeLisle, R.K.; Yu, S.J.; Welsh, W.J. Computational models for predicting the binding affinities of ligands for the wild-type androgen receptor and a mutated variant associated with human prostate cancer. Chem. Res. Toxicol., 2003, 16, 1652-1660.
-
(2003)
Chem. Res. Toxicol.
, vol.16
, pp. 1652-1660
-
-
Ai, N.1
DeLisle, R.K.2
Yu, S.J.3
Welsh, W.J.4
-
108
-
-
13444273448
-
The Universal Protein Resource (UniProt)
-
Bairoch, A.; Apweiler, R.; Wu, C.H.; Barker, W.C.; Boeckmann, B.; Ferro, S.; Gasteiger, E.; Huang, H.; Lopez, R.; Magrane, M.; Martin, M.J.; Natale, D.A.; O'Donovan, C.; Redaschi, N.; Yeh, L.S. The Universal Protein Resource (UniProt). Nucleic Acids Res., 2005, 33, D154-159.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Bairoch, A.1
Apweiler, R.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
Gasteiger, E.7
Huang, H.8
Lopez, R.9
Magrane, M.10
Martin, M.J.11
Natale, D.A.12
O'Donovan, C.13
Redaschi, N.14
Yeh, L.S.15
-
109
-
-
0033954256
-
The Protein Data Bank
-
Berman, H.M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T.N.; Weissig, H.; Shindyalov, I.N.; Bourne, P.E. The Protein Data Bank. Nucleic Acids Res., 2000, 28, 235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
110
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F.; Gish, W.; Miller, W.; Myers, E.W.; Lipman, D.J. Basic local alignment search tool. J. Mol. Biol., 1990, 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
111
-
-
0034065350
-
Computational methods for the structural alignment of molecules
-
Lemmen, C.; Lengauer, T. Computational methods for the structural alignment of molecules. J. Comput. Aided. Mol. Des., 2000, 14, 215-232.
-
(2000)
J. Comput. Aided. Mol. Des.
, vol.14
, pp. 215-232
-
-
Lemmen, C.1
Lengauer, T.2
-
112
-
-
0025398721
-
WHAT IF: A molecular modeling and drug design program
-
Vriend, G. WHAT IF: A molecular modeling and drug design program. J. Mol. Graph, 1990, 8, 52-56.
-
(1990)
J. Mol. Graph
, vol.8
, pp. 52-56
-
-
Vriend, G.1
-
113
-
-
0030624472
-
ANOLEA: A www server to assess protein structures
-
Melo, F.D.D.; Depiereux, E.; Feytmans, E. ANOLEA: a www server to assess protein structures. Proc. Int. Conf. Intell. Syst. Mol. Biol., 1997, 5, 187-190.
-
(1997)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.5
, pp. 187-190
-
-
Melo, F.D.D.1
Depiereux, E.2
Feytmans, E.3
-
114
-
-
0242330726
-
Application of 3D-Jury, GRDB, and Verify3D in fold recognition
-
von Grotthuss, M.; Pas, J.; Wyrwicz, L.; Ginalski, K.; Rychlewski, L. Application of 3D-Jury, GRDB, and Verify3D in fold recognition. Proteins, 2003, 53, Suppl 6, 418-23.
-
(2003)
Proteins
, vol.53
, Issue.SUPPL. 6
, pp. 418-423
-
-
von Grotthuss, M.1
Pas, J.2
Wyrwicz, L.3
Ginalski, K.4
Rychlewski, L.5
-
115
-
-
0026610767
-
Assessment of protein models with three-dimensional profiles
-
Lüthy, R.; Bowie, J.U.; Eisenberg, D. Assessment of protein models with three-dimensional profiles. Nature, 1992, 356, 83-85.
-
(1992)
Nature
, vol.356
, pp. 83-85
-
-
Lüthy, R.1
Bowie, J.U.2
Eisenberg, D.3
-
116
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
R. A. Laskowski; M. W. MacArthur; D. S. Moss; J. M. Thornton. PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Cryst., 1993, 26, 283-291
-
(1993)
J. Appl. Cryst.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
117
-
-
0027180507
-
Verification of protein structures: Patterns of nonbonded atomic interactions
-
Colovos, C.; Yeates, T.O. Verification of protein structures: patterns of nonbonded atomic interactions. Protein Science, 1993, 2, 1511-1519.
-
(1993)
Protein Science
, vol.2
, pp. 1511-1519
-
-
Colovos, C.1
Yeates, T.O.2
-
118
-
-
0035811492
-
Insights into Wnt binding and signalling from the structures of two Frizzled cysteine-rich domains
-
Dann, C.E.; Hsieh, J-C.; Rattner, A.; Sharma, D.; Nathans, J.; Leahy, D.J. Insights into Wnt binding and signalling from the structures of two Frizzled cysteine-rich domains. Nature, 2001, 412, 86-90.
-
(2001)
Nature
, vol.412
, pp. 86-90
-
-
Dann, C.E.1
Hsieh, J.-C.2
Rattner, A.3
Sharma, D.4
Nathans, J.5
Leahy, D.J.6
-
119
-
-
58149187896
-
MODBASE, a database of annotated comparative protein structure models and associated resources
-
Pieper, U.; Eswar, N.; Ben, M. W.; Eramian, D.; Kelly, L.; Barkan, D.T.; Carter, H.; Mankoo, P.; Karchin, R.; Marc, A. Marti-Renom; Davis, F.P.; Sali, A. MODBASE, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res., 2009, 37, D347-D354
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Pieper, U.1
Eswar, N.2
Ben, M.W.3
Eramian, D.4
Kelly, L.5
Barkan, D.T.6
Carter, H.7
Mankoo, P.8
Karchin, R.9
Marc, A.10
Marti-Renom, D.F.P.11
Sali, A.12
-
120
-
-
34249033584
-
Structural and pharmacological comparison of daboiatoxin from Daboia russelli siamensis with viperotoxin F and vipoxin from other vipers
-
G. Gopalan; M.M. Thwin; P. Gopalakrishnakone; K. Swaminathan. Structural and pharmacological comparison of daboiatoxin from Daboia russelli siamensis with viperotoxin F and vipoxin from other vipers. Acta Cryst., 2007, D63, 722-729.
-
(2007)
Acta Cryst.
, vol.D63
, pp. 722-729
-
-
Gopalan, G.1
Thwin, M.M.2
Gopalakrishnakone, P.3
Swaminathan, K.4
-
121
-
-
0037085393
-
Disulfide bond assignments of secreted Frizzled-related protein-1 provide insights about Frizzled homology and netrin modules
-
Chong, J.M.; Uren, A.; Rubin, J. S.; Speicher, D.W. Disulfide bond assignments of secreted Frizzled-related protein-1 provide insights about Frizzled homology and netrin modules. J. Biol. Chem., 2002, 277, 5134-5144.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 5134-5144
-
-
Chong, J.M.1
Uren, A.2
Rubin, J.S.3
Speicher, D.W.4
-
122
-
-
0037849892
-
Prediction of the unknown: Inspiring experience with the CAPRI experiment
-
Ben-Zeev, E.; Berchanski, A.; Heifetz, A.; Shapira, B.; Eisenstein, M. Prediction of the unknown: inspiring experience with the CAPRI experiment. Proteins, 2003, 52, 41-46.
-
(2003)
Proteins
, vol.52
, pp. 41-46
-
-
Ben-Zeev, E.1
Berchanski, A.2
Heifetz, A.3
Shapira, B.4
Eisenstein, M.5
-
123
-
-
0347519184
-
A novel scoring function for molecular docking
-
Muryshev, A.E.; Tarasov, D.N.; Butygin, A.V.; Butygina, O.Y.; Aleksandrov, A.B.; Nikitin, S.M. A novel scoring function for molecular docking. J. Comput. Aided Mol. Des., 2003, 17, 597-605.
-
(2003)
J. Comput. Aided Mol. Des.
, vol.17
, pp. 597-605
-
-
Muryshev, A.E.1
Tarasov, D.N.2
Butygin, A.V.3
Butygina, O.Y.4
Aleksandrov, A.B.5
Nikitin, S.M.6
-
124
-
-
33747840389
-
GRAMM-X public web server for protein-protein docking
-
Tovchigrechko, A.; Vakser, I.A. GRAMM-X public web server for protein-protein docking. Nucl. Acids Res., 2006, 34, W310-W314.
-
(2006)
Nucl. Acids Res.
, vol.34
-
-
Tovchigrechko, A.1
Vakser, I.A.2
-
125
-
-
0038185277
-
A novel shape complementarity scoring function for protein-protein docking
-
Chen, R.; Weng, Z. A novel shape complementarity scoring function for protein-protein docking. Proteins, 2003, 51, 397-408.
-
(2003)
Proteins
, vol.51
, pp. 397-408
-
-
Chen, R.1
Weng, Z.2
-
126
-
-
77954275738
-
HexServer: An FFT-based protein docking server powered by graphics processors
-
Macindoe, L.M.G.; Venkatraman, V.; Devignes, M-D.; Ritchie, D.W., HexServer: an FFT-based protein docking server powered by graphics processors. Nucl. Acids Res., 2010, 38, W445-W449.
-
(2010)
Nucl. Acids Res.
, vol.38
-
-
Macindoe, L.M.G.1
Venkatraman, V.2
Devignes, M.-D.3
Ritchie, D.W.4
-
127
-
-
18444418813
-
Science resources. Chemists want NIH to curtail database
-
Kaiser, J. Science resources. Chemists want NIH to curtail database. Science, 2005, 308, 774.
-
(2005)
Science
, vol.308
, pp. 774
-
-
Kaiser, J.1
|