Structural and pharmacological comparison of daboiatoxin from Daboia russelli siamensis with viperotoxin F and vipoxin from other vipers

Acta Crystallographica Section D: Biological Crystallography

Volumn 63, Issue 6, 2007, Pages 722-729

  Gopalan, Gayathri ^a,c   Thwin, Maung Maung ^a   Gopalakrishnakone, Ponnampalam ^a   Swaminathan, Kunchithapadam ^a,b  

^a NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^b INSTITUTE OF MOLECULAR AND CELL BIOLOGY   (Singapore)

^c ARIZONA STATE UNIVERSITY   (United States)

Author keywords

Daboia russelli siamensis (Myanmar); Daboiatoxin; Heterodimer; Non inhibitor; Phospholipase A 2; Viperotoxin F; Vipoxin

Indexed keywords

DABOIATOXIN; PHOSPHOLIPASE A; PROTEIN; UNCLASSIFIED DRUG; VIPER VENOM; VIPOXIN;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; COMPARATIVE STUDY; DIMERIZATION; ELECTRICITY; GENETICS; HUMAN; MOLECULAR GENETICS; MOUSE; PROTEIN CONFORMATION; PROTEIN QUATERNARY STRUCTURE; SEQUENCE HOMOLOGY; SNAKE; SPECIES DIFFERENCE; X RAY CRYSTALLOGRAPHY;

AMINO ACID SEQUENCE; ANIMALS; BINDING SITES; CRYSTALLOGRAPHY, X-RAY; DIMERIZATION; ELECTROSTATICS; HUMANS; MICE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PHOSPHOLIPASES A; PROTEIN CONFORMATION; PROTEIN STRUCTURE, QUATERNARY; PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; SPECIES SPECIFICITY; VIPER VENOMS; VIPERIDAE;

DABOIA RUSSELLII; DABOIA RUSSELLII SIAMENSIS; MUS; SARCODINA; VIPERA AMMODYTES; VIPERINAE;

EID: 34249033584     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444907016204     Document Type: Article

References (30)

1. Aleksiev, B. & Tchorbanov, B. (1976). Toxicon, 14, 477-485.
2. Banumathi, S., Rajashankar, K. R., Notzel, C., Aleksiev, B., Singh, T. P., Genov, N. & Betzel, C. (2001). Acta Cryst. D57, 1552-1559.
3. Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T. & Warren, G. L. (1998). Acta Cryst. D54, 905-921.
4. Brunie, S., Bolin, J., Gewirth, D. & Sigler, P. B. (1985). J. Biol. Chem. 260, 9742-9749.
5. Chandra, V., Kaur, P., Jasti, J., Betzel, C. & Singh, T. P. (2001). Acta Cryst. D57, 1793-1798.
6. Chandra, V., Kaur, P., Srinivasan, A. & Singh, T. P. (2000). J. Mol. Biol. 296, 1117-1126.
7. Chandra, V., Nagpal, A., Srinivasan, A. & Singh, T. P. (1999). Acta Cryst. D55, 925-926.
8. Collaborative Computational Project, Number 4 (1994). Acta Cryst. D50, 760-763.
9. Hooft, R.W.W., Vriend, G., Sander, C. & Abola, E. E. (1996). Nature (London), 381, 272.
10. Huang, H. C. & Lee, C. Y. (1984). Toxicon, 22, 207-217.
11. Jones, T. A., Zou, J.-Y., Cowan, S. W. & Kjeldgaard, M. (1991). Acta Cryst. A47, 110-119.
12. Kraulis, P. J. (1991). J. Appl. Cryst. 24, 946-950.
13. Laskowski, R. A., MacArthur, M. W., Moss, D. S. & Thornton, J. M. (1993). J. Appl. Cryst. 26, 283-291.
14. Lok, S. M., Rong, G., Rouault, M., Lambeau, G., Gopalakrishnakone, P. & Swaminathan, K. (2005). FEBS J. 272, 1211-1220.
15. Mancheva, I., Kleinschmidt, T., Aleksiev, B. & Braunitzer, G. (1987). Biol. Chem. Hoppe-Seyler, 368, 343-352.
16. Merritt, E. A. & Bacon, D. J. (1997). Methods Enzymol. 277, 505-524.
17. Otwinowski, Z. & Minor, W. (1997). Methods Enzymol. 276, 307-326.
18. Perbandt, M., Tsai, I. H., Fuchs, A., Banumathi, S., Rajashankar, K. R., Georgieva, D., Kalkura, N., Singh, T. P., Genov, N. & Betzel, C. (2003). Acta Cryst. D59, 1679-1687.
19. Perbandt, M., Wilson, J. C., Eschenburg, S., Mancheva, I., Aleksiev, B., Genov, N., Willingmann, P., Weber, W., Singh, T. P. & Betzel, C. (1997). FEBS Lett. 412, 573-577.
20. Renetseder, R., Brunie, S., Dikstra, B. W., Drenth, J. & Sigler, P. B. (1985). J. Biol. Chem. 260, 11627-11634.
21. Schevitz, R.W., Bach, N. J., Carlson, D. G., Chirgadze, N. Y., Clawson, D. K., Dillard, R. D., Draheim, S. E., Hartley, L. W., Jones, N. D., Mihelich, E. D., Olkowski, J. L., Snyder, D. W., Sommers, C. & Wery, J. P. (1995). Nature Struct. Biol. 2, 458-465.
22. Shatsky, M., Nussinov, R. & Wolfson, H. J. (2002). Lecture Notes Comput. Sci. 2452, 235-250.
23. Thwin, M. M., Gopalakrishnakone, P., Yuen, R. & Tan, C. H. (1995). Toxicon, 33, 63-76.
24. Thwin, M. M., Gopalakrishnakone, P., Yuen, R. & Tan, C. H. (1996). Toxicon, 34, 183-199.
25. Tsai, I. H., Lu, P. J. & Su, J. C. (1996). Toxicon, 34, 99-109.
26. Vagin, A. & Teplyakov, A. (1997). J. Appl. Cryst. 30, 1022-1025.
27. Wang, Y. M., Lu, P. J., Ho, C. L. & Tsai, I. H. (1992). Eur. J. Biochem. 209, 635-641.
28. Warrell, D. A. (1989). Trans. R. Soc. Trop. Med. Hyg. 83, 732-740.
29. Warrell, D. A., Phillips, R. E., Theakston, D. G., Galigeoara, Y., Abeysekera, D. T., Dissanayake, P., Hutton, R. A. & Aloysius, D. J. (1989). Toxicon, 27, 85-85.
30. Wuster, W., Otsuka, S., Malhotra, A. & Thorpe, R. S. (1992). Biol. J. Linn. Soc. 47, 97-113.