-
1
-
-
0041817645
-
Translational selection and yeast proteome evolution
-
Akashi H. Translational selection and yeast proteome evolution. Genetics 2003, 164:1291-1303.
-
(2003)
Genetics
, vol.164
, pp. 1291-1303
-
-
Akashi, H.1
-
2
-
-
77950421701
-
Fine-tuning translation kinetics selection as the driving force of codon usage bias in the hepatitis a virus capsid
-
Aragones L., Guix S., Ribes E., Bosch A., Pinto R.M. Fine-tuning translation kinetics selection as the driving force of codon usage bias in the hepatitis a virus capsid. PLoS Pathog. 2010, 6:e1000797.
-
(2010)
PLoS Pathog.
, vol.6
-
-
Aragones, L.1
Guix, S.2
Ribes, E.3
Bosch, A.4
Pinto, R.M.5
-
3
-
-
0023840492
-
The two proteins encoded by the cottontail rabbit papillomavirus E6 open reading frame differ with respect to localization and phosphorylation 2
-
Barbosa M.S., Wettstein F.O. The two proteins encoded by the cottontail rabbit papillomavirus E6 open reading frame differ with respect to localization and phosphorylation 2. J. Virol. 1988, 62:1088-1092.
-
(1988)
J. Virol.
, vol.62
, pp. 1088-1092
-
-
Barbosa, M.S.1
Wettstein, F.O.2
-
4
-
-
0034093106
-
Cervical lesions ave associated with human papillomavirus type 16 intratypic variants that have high transcriptional activity and increased usage of common mammalian codons 1
-
Bible J.M., Mant C., Best J.M., Kell B., Starkey W.G., Raju K.S., Seed P., Biswas C., Muir P., Banatvala J.E., Cason J. Cervical lesions ave associated with human papillomavirus type 16 intratypic variants that have high transcriptional activity and increased usage of common mammalian codons 1. J. Gen. Virol. 2000, 81:1517-1527.
-
(2000)
J. Gen. Virol.
, vol.81
, pp. 1517-1527
-
-
Bible, J.M.1
Mant, C.2
Best, J.M.3
Kell, B.4
Starkey, W.G.5
Raju, K.S.6
Seed, P.7
Biswas, C.8
Muir, P.9
Banatvala, J.E.10
Cason, J.11
-
5
-
-
33645215084
-
Modulation of poliovirus replicative fitness in HeLa cells by deoptimization of synonymous codon usage in the capsid region 1
-
Burns C.C., Shaw J., Campagnoli R., Jorba J., Vincent A., Quay J., Kew O. Modulation of poliovirus replicative fitness in HeLa cells by deoptimization of synonymous codon usage in the capsid region 1. J. Virol. 2006, 80:3259-3272.
-
(2006)
J. Virol.
, vol.80
, pp. 3259-3272
-
-
Burns, C.C.1
Shaw, J.2
Campagnoli, R.3
Jorba, J.4
Vincent, A.5
Quay, J.6
Kew, O.7
-
6
-
-
19544391975
-
A synonymous SNP of the corneodesmosin gene leads to increased mRNA stability and demonstrates association with psoriasis across diverse ethnic groups
-
Capon F., Allen M.H., Ameen M., Burden A.D., Tillman D., Barker J.N., Trembath R.C. A synonymous SNP of the corneodesmosin gene leads to increased mRNA stability and demonstrates association with psoriasis across diverse ethnic groups. Hum. Mol. Genet. 2004, 13:2361-2368.
-
(2004)
Hum. Mol. Genet.
, vol.13
, pp. 2361-2368
-
-
Capon, F.1
Allen, M.H.2
Ameen, M.3
Burden, A.D.4
Tillman, D.5
Barker, J.N.6
Trembath, R.C.7
-
7
-
-
3042742751
-
Experimental reduction of codon bias in the Drosophila alcohol dehydrogenase gene results in decreased ethanol tolerance of adult flies
-
Carlini D.B. Experimental reduction of codon bias in the Drosophila alcohol dehydrogenase gene results in decreased ethanol tolerance of adult flies. J. Evol. Biol. 2004, 17:779-785.
-
(2004)
J. Evol. Biol.
, vol.17
, pp. 779-785
-
-
Carlini, D.B.1
-
8
-
-
30744432134
-
Evidence for selection on synonymous mutations affecting stability of mRNA secondary structure in mammals 1
-
Chamary J.V., Hurst L.D. Evidence for selection on synonymous mutations affecting stability of mRNA secondary structure in mammals 1. Genome Biol. 2005, 6.
-
(2005)
Genome Biol.
, pp. 6
-
-
Chamary, J.V.1
Hurst, L.D.2
-
9
-
-
31144465926
-
Hearing silence: non-neutral evolution at synonymous sites in mammals 1
-
Chamary J.V., Parmley J.L., Hurst L.D. Hearing silence: non-neutral evolution at synonymous sites in mammals 1. Nat. Rev. Genet. 2006, 7:98-108.
-
(2006)
Nat. Rev. Genet.
, vol.7
, pp. 98-108
-
-
Chamary, J.V.1
Parmley, J.L.2
Hurst, L.D.3
-
10
-
-
78149437703
-
Non-synonymous and synonymous coding SNPs show similar likelihood and effect size of human disease association
-
Chen R., Davydov E.V., Sirota M., Butte A.J. Non-synonymous and synonymous coding SNPs show similar likelihood and effect size of human disease association. PLoS One 2010, 5:e13574.
-
(2010)
PLoS One
, vol.5
-
-
Chen, R.1
Davydov, E.V.2
Sirota, M.3
Butte, A.J.4
-
11
-
-
77953477383
-
Human alpha and beta papillomaviruses use different synonymous codon profiles
-
Cladel N.M., Bertotto A., Christensen N.D. Human alpha and beta papillomaviruses use different synonymous codon profiles. Virus Genes 2010, 40:329-340.
-
(2010)
Virus Genes
, vol.40
, pp. 329-340
-
-
Cladel, N.M.1
Bertotto, A.2
Christensen, N.D.3
-
12
-
-
39049149358
-
Wounding prior to challenge substantially improves infectivity of cottontail rabbit papillomavirus and allows for standardization of infection 1
-
Cladel N.M., Hu J., Balogh K., Mejia A., Christensen N.D. Wounding prior to challenge substantially improves infectivity of cottontail rabbit papillomavirus and allows for standardization of infection 1. J. Virol. Methods 2008, 148:34-39.
-
(2008)
J. Virol. Methods
, vol.148
, pp. 34-39
-
-
Cladel, N.M.1
Hu, J.2
Balogh, K.3
Mejia, A.4
Christensen, N.D.5
-
13
-
-
51449085986
-
CRPV genomes with synonymous codon optimizations in the CRPV E7 gene show phenotypic differences in growth and altered immunity upon E7 vaccination 1
-
Cladel N.M., Hu J., Balogh K.K., Christensen N.D. CRPV genomes with synonymous codon optimizations in the CRPV E7 gene show phenotypic differences in growth and altered immunity upon E7 vaccination 1. PLoS One 2008, 3:e2947.
-
(2008)
PLoS One
, vol.3
-
-
Cladel, N.M.1
Hu, J.2
Balogh, K.K.3
Christensen, N.D.4
-
14
-
-
46449120581
-
Virus attenuation by genome-scale changes in codon pair bias
-
Coleman J.R., Papamichail D., Skiena S., Futcher B., Wimmer E., Mueller S. Virus attenuation by genome-scale changes in codon pair bias. Science 2008, 320:1784-1787.
-
(2008)
Science
, vol.320
, pp. 1784-1787
-
-
Coleman, J.R.1
Papamichail, D.2
Skiena, S.3
Futcher, B.4
Wimmer, E.5
Mueller, S.6
-
15
-
-
0036295371
-
Silent mutations affect in vivo protein folding in Escherichia coli
-
Cortazzo P., Cervenansky C., Marin M., Reiss C., Ehrlich R., Deana A. Silent mutations affect in vivo protein folding in Escherichia coli. Biochem. Bioph. Res. Comm. 2002, 293:537-541.
-
(2002)
Biochem. Bioph. Res. Comm.
, vol.293
, pp. 537-541
-
-
Cortazzo, P.1
Cervenansky, C.2
Marin, M.3
Reiss, C.4
Ehrlich, R.5
Deana, A.6
-
16
-
-
53149093203
-
Routes of extraocular extension of uveal melanoma: risk factors and influence on survival probability
-
Coupland S.E., Campbell I., Damato B. Routes of extraocular extension of uveal melanoma: risk factors and influence on survival probability. Ophthalmology 2008, 115:1778-1785.
-
(2008)
Ophthalmology
, vol.115
, pp. 1778-1785
-
-
Coupland, S.E.1
Campbell, I.2
Damato, B.3
-
17
-
-
0036142218
-
Mitotic phosphorylation of histone H3: spatio-temporal regulation by mammalian Aurora kinases
-
Crosio C., Fimia G.M., Loury R., Kimura M., Okano Y., Zhou H., Sen S., Allis C.D., Sassone-Corsi P. Mitotic phosphorylation of histone H3: spatio-temporal regulation by mammalian Aurora kinases. Mol. Cell Biol. 2002, 22:874-885.
-
(2002)
Mol. Cell Biol.
, vol.22
, pp. 874-885
-
-
Crosio, C.1
Fimia, G.M.2
Loury, R.3
Kimura, M.4
Okano, Y.5
Zhou, H.6
Sen, S.7
Allis, C.D.8
Sassone-Corsi, P.9
-
18
-
-
35548929728
-
G2/M cell cycle arrest in the life cycle of viruses
-
Davy C., Doorbar J. G2/M cell cycle arrest in the life cycle of viruses. Virology 2007, 368:219-226.
-
(2007)
Virology
, vol.368
, pp. 219-226
-
-
Davy, C.1
Doorbar, J.2
-
19
-
-
77049121449
-
Expression of papillomavirus L1 proteins regulated by authentic gene codon usage is favoured in G2/M-like cells in differentiating keratinocytes
-
Ding J., Doorbar J., Li B., Zhou F., Gu W., Zhao L., Saunders N.A., Frazer I.H., Zhao K.N. Expression of papillomavirus L1 proteins regulated by authentic gene codon usage is favoured in G2/M-like cells in differentiating keratinocytes. Virology 2010, 399:46-58.
-
(2010)
Virology
, vol.399
, pp. 46-58
-
-
Ding, J.1
Doorbar, J.2
Li, B.3
Zhou, F.4
Gu, W.5
Zhao, L.6
Saunders, N.A.7
Frazer, I.H.8
Zhao, K.N.9
-
20
-
-
33646675570
-
Molecular biology of human papillomavirus infection and cervical cancer
-
Doorbar J. Molecular biology of human papillomavirus infection and cervical cancer. Clin. Sci. 2006, 110:525-541.
-
(2006)
Clin. Sci.
, vol.110
, pp. 525-541
-
-
Doorbar, J.1
-
21
-
-
47549097539
-
Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution 1
-
Drummond D.A., Wilke C.O. Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution 1. Cell 2008, 134:341-352.
-
(2008)
Cell
, vol.134
, pp. 341-352
-
-
Drummond, D.A.1
Wilke, C.O.2
-
22
-
-
0037320652
-
Synonymous mutations in the human dopamine receptor D2 (DRD2) affect mRNA stability and synthesis of the receptor
-
Duan J.B., Wainwright M.S., Comeron J.M., Saitou N., Sanders A.R., Gelernter J., Gejman P.V. Synonymous mutations in the human dopamine receptor D2 (DRD2) affect mRNA stability and synthesis of the receptor. Hum. Mol. Genet. 2003, 12:205-216.
-
(2003)
Hum. Mol. Genet.
, vol.12
, pp. 205-216
-
-
Duan, J.B.1
Wainwright, M.S.2
Comeron, J.M.3
Saitou, N.4
Sanders, A.R.5
Gelernter, J.6
Gejman, P.V.7
-
23
-
-
84863112436
-
Characterization of coding synonymous and non-synonymous variants in ADAMTS13 using ex vivo and in silico approaches
-
Edwards N.C., Hing Z.A., Perry A., Blaisdell A., Kopelman D.B., Fathke R., Plum W., Newell J., Allen C.E.,.S.G., Shapiro A., Okunji C., Kosti I., Shomron N., Grigoryan V., Przytycka T.M., Sauna Z.E., Salari R., Mandel-Gutfreund Y., Komar A.A., Kimchi-Sarfaty C. Characterization of coding synonymous and non-synonymous variants in ADAMTS13 using ex vivo and in silico approaches. PLoS One 2012, 7:e38864.
-
(2012)
PLoS One
, vol.7
-
-
Edwards, N.C.1
Hing, Z.A.2
Perry, A.3
Blaisdell, A.4
Kopelman, D.B.5
Fathke, R.6
Plum, W.7
Newell, J.8
Allen, C.E.S.G.9
Shapiro, A.10
Okunji, C.11
Kosti, I.12
Shomron, N.13
Grigoryan, V.14
Przytycka, T.M.15
Sauna, Z.E.16
Salari, R.17
Mandel-Gutfreund, Y.18
Komar, A.A.19
Kimchi-Sarfaty, C.20
more..
-
24
-
-
19344367734
-
Single nucleotide polymorphism-based validation of exonic splicing enhancers 1
-
Fairbrother W.G., Holste D., Burge C.B., Sharp P.A. Single nucleotide polymorphism-based validation of exonic splicing enhancers 1. PLos Biol. 2004, 2:1388-1395.
-
(2004)
PLos Biol.
, vol.2
, pp. 1388-1395
-
-
Fairbrother, W.G.1
Holste, D.2
Burge, C.B.3
Sharp, P.A.4
-
25
-
-
39649112426
-
The E7 protein of the cottontail rabbit papillomavirus immortalizes normal rabbit keratinocytes and reduces pRb levels, while E6 cooperates in immortalization but neither degrades p53 nor binds E6AP
-
Ganzenmueller T., Matthaei M., Muench P., Scheible M., Iftner A., Hiller T., Leiprecht N., Probst S., Stubenrauch F., Iftner T. The E7 protein of the cottontail rabbit papillomavirus immortalizes normal rabbit keratinocytes and reduces pRb levels, while E6 cooperates in immortalization but neither degrades p53 nor binds E6AP. Virology 2008, 372:313-324.
-
(2008)
Virology
, vol.372
, pp. 313-324
-
-
Ganzenmueller, T.1
Matthaei, M.2
Muench, P.3
Scheible, M.4
Iftner, A.5
Hiller, T.6
Leiprecht, N.7
Probst, S.8
Stubenrauch, F.9
Iftner, T.10
-
26
-
-
0141705294
-
Codon usage optimization of HIV type 1 subtype C gag, pol, env, and nef genes: in vitro expression and immune responses in DNA-vaccinated mice 1
-
Gao F., Li Y., Decker J.M., Peyerl F.W., Bibollet-Ruche F., Rodenburg C.M., Chen Y., Shaw D.R., Allen S., Musonda R., Shaw G.M., Zajac A.J., Letvin N., Hahn B.H. Codon usage optimization of HIV type 1 subtype C gag, pol, env, and nef genes: in vitro expression and immune responses in DNA-vaccinated mice 1. AIDS Res. Hum. Retroviruses 2003, 19:817-823.
-
(2003)
AIDS Res. Hum. Retroviruses
, vol.19
, pp. 817-823
-
-
Gao, F.1
Li, Y.2
Decker, J.M.3
Peyerl, F.W.4
Bibollet-Ruche, F.5
Rodenburg, C.M.6
Chen, Y.7
Shaw, D.R.8
Allen, S.9
Musonda, R.10
Shaw, G.M.11
Zajac, A.J.12
Letvin, N.13
Hahn, B.H.14
-
27
-
-
79954456859
-
Determinants of translation efficiency and accuracy
-
Gingold H., Pilpel Y. Determinants of translation efficiency and accuracy. Mol. Syst. Biol. 2011, 7.
-
(2011)
Mol. Syst. Biol.
, pp. 7
-
-
Gingold, H.1
Pilpel, Y.2
-
28
-
-
77950346282
-
Immunity, inflammation, and cancer
-
Grivennikov S.I., Greten F.R., Karin M. Immunity, inflammation, and cancer. Cell 2010, 140:883-899.
-
(2010)
Cell
, vol.140
, pp. 883-899
-
-
Grivennikov, S.I.1
Greten, F.R.2
Karin, M.3
-
29
-
-
34547857749
-
Generalized substitution of isoencoding codons shortens the duration of papillomavirus L1 protein expression in transiently gene-transfected keratinocytes due to cell differentiation
-
Gu W., Ding J., Wang X., de Kluyver R.L., Saunders N.A., Frazer I.H., Zhao K.N. Generalized substitution of isoencoding codons shortens the duration of papillomavirus L1 protein expression in transiently gene-transfected keratinocytes due to cell differentiation. Nucleic Acids Res. 2007, 35:4820-4832.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 4820-4832
-
-
Gu, W.1
Ding, J.2
Wang, X.3
de Kluyver, R.L.4
Saunders, N.A.5
Frazer, I.H.6
Zhao, K.N.7
-
30
-
-
4344645596
-
TRNASer(CGA) differentially regulates expression of wild-type and codon-modified papillomavirus L1 genes
-
Gu W., Li M., Zhao W.M., Fang N.X., Bu S., Frazer I.H., Zhao K.N. tRNASer(CGA) differentially regulates expression of wild-type and codon-modified papillomavirus L1 genes. Nucleic Acids Res. 2004, 32:4448-4461.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 4448-4461
-
-
Gu, W.1
Li, M.2
Zhao, W.M.3
Fang, N.X.4
Bu, S.5
Frazer, I.H.6
Zhao, K.N.7
-
31
-
-
33846519298
-
A single-nucleotide synonymous mutation in the gag gene controlling human immunodeficiency virus type 1 virion production
-
Hamano T., Matsuo K., Hibi Y., Victoriano A.F.B., Takahashi N., Mabuchi Y., Soji T., Irie S., Sawanpanyalert P., Yanai H., Hara T., Yamazaki S., Yamamoto N., Okamoto T. A single-nucleotide synonymous mutation in the gag gene controlling human immunodeficiency virus type 1 virion production. J. Virol. 2007, 81:1528-1533.
-
(2007)
J. Virol.
, vol.81
, pp. 1528-1533
-
-
Hamano, T.1
Matsuo, K.2
Hibi, Y.3
Victoriano, A.F.B.4
Takahashi, N.5
Mabuchi, Y.6
Soji, T.7
Irie, S.8
Sawanpanyalert, P.9
Yanai, H.10
Hara, T.11
Yamazaki, S.12
Yamamoto, N.13
Okamoto, T.14
-
32
-
-
0032786537
-
Protection of rabbits from viral challenge by gene gun-based intracutaneous vaccination with a combination of cottontail rabbit papillomavirus E1, E2, E6, and E7 genes
-
Han R.C., Cladel N.M., Reed C.A., Peng X.W., Christensen N.D. Protection of rabbits from viral challenge by gene gun-based intracutaneous vaccination with a combination of cottontail rabbit papillomavirus E1, E2, E6, and E7 genes. J. Virol. 1999, 73:7039-7043.
-
(1999)
J. Virol.
, vol.73
, pp. 7039-7043
-
-
Han, R.C.1
Cladel, N.M.2
Reed, C.A.3
Peng, X.W.4
Christensen, N.D.5
-
33
-
-
79952284127
-
Hallmarks of cancer: the next generation
-
Hanahan D., Weinberg R.A. Hallmarks of cancer: the next generation. Cell 2011, 144:646-674.
-
(2011)
Cell
, vol.144
, pp. 646-674
-
-
Hanahan, D.1
Weinberg, R.A.2
-
34
-
-
77749268307
-
Experimentally increased codon bias in the Drosophila adh gene leads to an increase in larval, but not adult, alcohol dehydrogenase activity
-
Hense W., Anderson N., Hutter S., Stephan W., Parsch J., Carlini D.B. Experimentally increased codon bias in the Drosophila adh gene leads to an increase in larval, but not adult, alcohol dehydrogenase activity. Genetics 2010, 184:547-555.
-
(2010)
Genetics
, vol.184
, pp. 547-555
-
-
Hense, W.1
Anderson, N.2
Hutter, S.3
Stephan, W.4
Parsch, J.5
Carlini, D.B.6
-
35
-
-
23944508028
-
In vivo analysis of mRNA stability using the Tet-Off system in the chicken embryo
-
Hilgers V., Pourquie O., Dubrulle J. In vivo analysis of mRNA stability using the Tet-Off system in the chicken embryo. Dev. Biol. 2005, 284:292-300.
-
(2005)
Dev. Biol.
, vol.284
, pp. 292-300
-
-
Hilgers, V.1
Pourquie, O.2
Dubrulle, J.3
-
36
-
-
38849203228
-
In vivo switching of human melanoma cells between proliferative and invasive states
-
Hoek K.S., Eichhoff O.M., Schlegel N.C., Dobbeling U., Kobert N., Schaerer L., Hemmi S., Dummer R. In vivo switching of human melanoma cells between proliferative and invasive states. Cancer Res. 2008, 68:650-656.
-
(2008)
Cancer Res.
, vol.68
, pp. 650-656
-
-
Hoek, K.S.1
Eichhoff, O.M.2
Schlegel, N.C.3
Dobbeling, U.4
Kobert, N.5
Schaerer, L.6
Hemmi, S.7
Dummer, R.8
-
37
-
-
84875263074
-
Impact of genetic changes to the CRPV genome and their application to the study of pathogenesis in vivo
-
Hu J., Cladel N.M., Balogh K., Budgeon L., Christensen N.D. Impact of genetic changes to the CRPV genome and their application to the study of pathogenesis in vivo. Virology 2006.
-
(2006)
Virology
-
-
Hu, J.1
Cladel, N.M.2
Balogh, K.3
Budgeon, L.4
Christensen, N.D.5
-
38
-
-
0036889352
-
Amino acid residues in the carboxy-terminal region of cottontail rabbit papillomavirus E6 influence spontaneous regression of cutaneous papillomas
-
Hu J., Cladel N.M., Pickel M.D., Christensen N.D. Amino acid residues in the carboxy-terminal region of cottontail rabbit papillomavirus E6 influence spontaneous regression of cutaneous papillomas. J. Virol. 2002, 76:11801-11808.
-
(2002)
J. Virol.
, vol.76
, pp. 11801-11808
-
-
Hu, J.1
Cladel, N.M.2
Pickel, M.D.3
Christensen, N.D.4
-
39
-
-
11444265792
-
Large cutaneous rabbit papillomas that persist during cyclosporin A treatment can regress spontaneously after cessation of immunosuppression
-
Hu J., Peng X., Cladel N.M., Pickel M.D., Christensen N.D. Large cutaneous rabbit papillomas that persist during cyclosporin A treatment can regress spontaneously after cessation of immunosuppression. J. Gen. Virol. 2005, 86:55-63.
-
(2005)
J. Gen. Virol.
, vol.86
, pp. 55-63
-
-
Hu, J.1
Peng, X.2
Cladel, N.M.3
Pickel, M.D.4
Christensen, N.D.5
-
40
-
-
84867527044
-
Metabolic associations of reduced proliferation and oxidative stress in advanced breast cancer
-
Jerby L., Wolf L., Denkert C., Stein G.Y., Hilvo M., Oresic M., Geiger T., Ruppin E. Metabolic associations of reduced proliferation and oxidative stress in advanced breast cancer. Cancer Res. 2012.
-
(2012)
Cancer Res.
-
-
Jerby, L.1
Wolf, L.2
Denkert, C.3
Stein, G.Y.4
Hilvo, M.5
Oresic, M.6
Geiger, T.7
Ruppin, E.8
-
41
-
-
0032102860
-
Histone H3 phosphorylation and expression of cyclins A and B1 measured in individual cells during their progression through G2 and mitosis
-
Juan G., Traganos F., James W.M., Ray J.M., Roberge M., Sauve D.M., Anderson H., Darzynkiewicz Z. Histone H3 phosphorylation and expression of cyclins A and B1 measured in individual cells during their progression through G2 and mitosis. Cytometry 1998, 32:71-77.
-
(1998)
Cytometry
, vol.32
, pp. 71-77
-
-
Juan, G.1
Traganos, F.2
James, W.M.3
Ray, J.M.4
Roberge, M.5
Sauve, D.M.6
Anderson, H.7
Darzynkiewicz, Z.8
-
42
-
-
68949114186
-
Genetic polymorphisms in the EGFR (R521K) and estrogen receptor (T594T) Genes, EGFR and ErbB-2 Protein expression, and breast cancer risk in Tunisia
-
10.1155/2009/753683
-
Kallel I., Rebai M., Khabir A., Farid N.R., Rebai A. Genetic polymorphisms in the EGFR (R521K) and estrogen receptor (T594T) Genes, EGFR and ErbB-2 Protein expression, and breast cancer risk in Tunisia. J. Biomed. Biotechnol. 2009, 10.1155/2009/753683.
-
(2009)
J. Biomed. Biotechnol.
-
-
Kallel, I.1
Rebai, M.2
Khabir, A.3
Farid, N.R.4
Rebai, A.5
-
43
-
-
84856116965
-
Breaking the silence
-
Katsnelson A. Breaking the silence. Nat. Med. 2011, 17:1536-1538.
-
(2011)
Nat. Med.
, vol.17
, pp. 1536-1538
-
-
Katsnelson, A.1
-
44
-
-
33846504706
-
A silent polymorphism in the MDR1 gene changes substrate specificity 1
-
Kimchi-Sarfaty C., Oh J.M., Kim I.W., Sauna Z.E., Calcagno A.M., Ambudkar S.V., Gottesman M.M. A silent polymorphism in the MDR1 gene changes substrate specificity 1. Science 2007, 315:525-528.
-
(2007)
Science
, vol.315
, pp. 525-528
-
-
Kimchi-Sarfaty, C.1
Oh, J.M.2
Kim, I.W.3
Sauna, Z.E.4
Calcagno, A.M.5
Ambudkar, S.V.6
Gottesman, M.M.7
-
45
-
-
27944475243
-
Molecular mechanisms regulating mRNA stability: Physiological and pathological significance
-
Knapinska A.M., Irizarry-Barreto P., Adusumalli S., Androulakis L., Brewer G. Molecular mechanisms regulating mRNA stability: Physiological and pathological significance. Curr. Genom. 2005, 6:471-486.
-
(2005)
Curr. Genom.
, vol.6
, pp. 471-486
-
-
Knapinska, A.M.1
Irizarry-Barreto, P.2
Adusumalli, S.3
Androulakis, L.4
Brewer, G.5
-
46
-
-
13444291526
-
Codon bias as a factor in regulating expression via translation rate in the human genome 1
-
Lavner Y., Kotlar D. Codon bias as a factor in regulating expression via translation rate in the human genome 1. Gene 2005, 345:127-138.
-
(2005)
Gene
, vol.345
, pp. 127-138
-
-
Lavner, Y.1
Kotlar, D.2
-
47
-
-
0038534457
-
Increased P-glycoprotein messenger RNA stability in rat liver tumors in vivo
-
Lee C.H., Bradley G., Ling V. Increased P-glycoprotein messenger RNA stability in rat liver tumors in vivo. J. Cell Physiol. 1998, 177:1-12.
-
(1998)
J. Cell Physiol.
, vol.177
, pp. 1-12
-
-
Lee, C.H.1
Bradley, G.2
Ling, V.3
-
48
-
-
0036261716
-
Regulation of c-myc mRNA decay by translational pausing in a coding region instability determinant
-
Lemm I., Ross J. Regulation of c-myc mRNA decay by translational pausing in a coding region instability determinant. Mol. Cell. Biol. 2002, 22:3959-3969.
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 3959-3969
-
-
Lemm, I.1
Ross, J.2
-
49
-
-
13544274323
-
Codon optimization of the BirA enzyme gene leads to higher expression and an improved efficiency of biotinylation of target proteins in mammalian cells
-
Mechold U., Gilbert C., Ogryzko V. Codon optimization of the BirA enzyme gene leads to higher expression and an improved efficiency of biotinylation of target proteins in mammalian cells. J. Biotechnol. 2005, 116:245-249.
-
(2005)
J. Biotechnol.
, vol.116
, pp. 245-249
-
-
Mechold, U.1
Gilbert, C.2
Ogryzko, V.3
-
50
-
-
0141632854
-
Organization of human papillomavirus productive cycle during neoplastic progression provides a basis for selection of diagnostic markers
-
Middleton K., Peh W., Southern S., Griffin H., Sotlar K., Nakahara T., El Sherif A., Morris L., Seth R., Hibma M., Jenkins D., Lambert P., Coleman N., Doorbar J. Organization of human papillomavirus productive cycle during neoplastic progression provides a basis for selection of diagnostic markers. J. Virol. 2003, 77:10186-10201.
-
(2003)
J. Virol.
, vol.77
, pp. 10186-10201
-
-
Middleton, K.1
Peh, W.2
Southern, S.3
Griffin, H.4
Sotlar, K.5
Nakahara, T.6
El Sherif, A.7
Morris, L.8
Seth, R.9
Hibma, M.10
Jenkins, D.11
Lambert, P.12
Coleman, N.13
Doorbar, J.14
-
51
-
-
77954955259
-
Human papillomavirus oncoproteins: pathways to transformation
-
Moody C.A., Laimins L.A. Human papillomavirus oncoproteins: pathways to transformation. Nat. Rev. Cancer 2010, 10:550-560.
-
(2010)
Nat. Rev. Cancer
, vol.10
, pp. 550-560
-
-
Moody, C.A.1
Laimins, L.A.2
-
52
-
-
3242676308
-
Codon optimization of the human papillomavirus 11 (HPV 11) L1 gene leads to increased gene expression and formation of virus-like particles in mammalian epithelial cells 1
-
Mossadegh N., Gissmann L., Muller M., Zentgraf H., Alonso A., Tomakidi P. Codon optimization of the human papillomavirus 11 (HPV 11) L1 gene leads to increased gene expression and formation of virus-like particles in mammalian epithelial cells 1. Virology 2004, 326:57-66.
-
(2004)
Virology
, vol.326
, pp. 57-66
-
-
Mossadegh, N.1
Gissmann, L.2
Muller, M.3
Zentgraf, H.4
Alonso, A.5
Tomakidi, P.6
-
53
-
-
33748923860
-
Reduction of the rate of poliovirus protein synthesis through large-scale codon deoptimization causes attenuation of viral virulence by lowering specific infectivity
-
Mueller S., Papamichail D., Coleman J.R., Skiena S., Wimmer E. Reduction of the rate of poliovirus protein synthesis through large-scale codon deoptimization causes attenuation of viral virulence by lowering specific infectivity. J. Virol. 2006, 80:9687-9696.
-
(2006)
J. Virol.
, vol.80
, pp. 9687-9696
-
-
Mueller, S.1
Papamichail, D.2
Coleman, J.R.3
Skiena, S.4
Wimmer, E.5
-
54
-
-
33845899137
-
Human catechol-O-methyltransferase haplotypes modulate protein expression by altering mRNA secondary structure 1
-
Nackley A.G., Shabalina S.A., Tchivileva I.E., Satterfield K., Korchynskyi O., Makarov S.S., Maixner W., Diatchenko L. Human catechol-O-methyltransferase haplotypes modulate protein expression by altering mRNA secondary structure 1. Science 2006, 314:1930-1933.
-
(2006)
Science
, vol.314
, pp. 1930-1933
-
-
Nackley, A.G.1
Shabalina, S.A.2
Tchivileva, I.E.3
Satterfield, K.4
Korchynskyi, O.5
Makarov, S.S.6
Maixner, W.7
Diatchenko, L.8
-
56
-
-
0027509547
-
Shope Papilloma Cell and Leukocyte Proliferation in Regressing and Progressing Lesions
-
Okabayashi M., Angell M.G., Budgeon L.R., Kreider J.W. Shope Papilloma Cell and Leukocyte Proliferation in Regressing and Progressing Lesions. Am. J. Pathol. 1993, 142:489-496.
-
(1993)
Am. J. Pathol.
, vol.142
, pp. 489-496
-
-
Okabayashi, M.1
Angell, M.G.2
Budgeon, L.R.3
Kreider, J.W.4
-
57
-
-
34547709593
-
Exonic splicing regulatory elements Skew synonymous codon usage near intron-exon boundaries in mammals
-
Parmley J.L., Hurst L.D. Exonic splicing regulatory elements Skew synonymous codon usage near intron-exon boundaries in mammals. Mol. Biol. Evol. 2007, 24:1600-1603.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1600-1603
-
-
Parmley, J.L.1
Hurst, L.D.2
-
58
-
-
0030687656
-
Meningioma Grading: an analysis of histologic parameters
-
Ref Type: Generic
-
Perry Arie, Stafford L., Scheithauer W., Suman J., Lohse M. Meningioma Grading: an analysis of histologic parameters. Am. J. Surg. Pathol. 1997, 21(12):1455-1465. Ref Type: Generic.
-
(1997)
Am. J. Surg. Pathol.
, vol.21
, Issue.12
, pp. 1455-1465
-
-
Perry, A.1
Stafford, L.2
Scheithauer, W.3
Suman, J.4
Lohse, M.5
-
59
-
-
17344392308
-
A new mathematical model for relative quantification in real-time RT-PCR
-
Pfaffl M.W. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 2001, 29:e45.
-
(2001)
Nucleic Acids Res.
, vol.29
-
-
Pfaffl, M.W.1
-
60
-
-
78650304100
-
Synonymous but not the same: the causes and consequences of codon bias
-
Plotkin J.B., Kudla G. Synonymous but not the same: the causes and consequences of codon bias. Nat. Rev. Genet. 2011, 12:32-42.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 32-42
-
-
Plotkin, J.B.1
Kudla, G.2
-
61
-
-
0030819115
-
A cottontail rabbit papillomavirus strain (CRPVb) with strikingly divergent E6 and E7 oncoproteins: an insight in the evolution of papillomaviruses
-
Salmon J., Ramoz N., Cassonnet P., Orth G., Breitburd F. A cottontail rabbit papillomavirus strain (CRPVb) with strikingly divergent E6 and E7 oncoproteins: an insight in the evolution of papillomaviruses. Virology 1997, 235:228-234.
-
(1997)
Virology
, vol.235
, pp. 228-234
-
-
Salmon, J.1
Ramoz, N.2
Cassonnet, P.3
Orth, G.4
Breitburd, F.5
-
62
-
-
80052964856
-
Understanding the contribution of synonymous mutations to human disease
-
Sauna Z.E., Kimchi-Sarfaty C. Understanding the contribution of synonymous mutations to human disease. Nat. Rev. Genet. 2011, 12:683-691.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 683-691
-
-
Sauna, Z.E.1
Kimchi-Sarfaty, C.2
-
63
-
-
33747500567
-
A genomic code for nucleosome positioning
-
Segal E., Fondufe-Mittendorf Y., Chen L.Y., Thastrom A., Field Y., Moore I.K., Wang J.P.Z., Widom J. A genomic code for nucleosome positioning. Nature 2006, 442(772-778).
-
(2006)
Nature
, vol.442
, pp. 772-778
-
-
Segal, E.1
Fondufe-Mittendorf, Y.2
Chen, L.Y.3
Thastrom, A.4
Field, Y.5
Moore, I.K.6
Wang, J.P.Z.7
Widom, J.8
-
64
-
-
0031010073
-
Regression of papillomas induced by cottontail rabbit papillomavirus is associated with infiltration of CD8+ cells and persistence of viral DNA after regression
-
Selvakumar R., Schmitt A., Iftner T., Ahmed R., Wettstein F.O. Regression of papillomas induced by cottontail rabbit papillomavirus is associated with infiltration of CD8+ cells and persistence of viral DNA after regression. J. Virol. 1997, 71:5540-5548.
-
(1997)
J. Virol.
, vol.71
, pp. 5540-5548
-
-
Selvakumar, R.1
Schmitt, A.2
Iftner, T.3
Ahmed, R.4
Wettstein, F.O.5
-
65
-
-
0025988205
-
Synonymous codon usage in Saccharomyces-Cerevisiae
-
Sharp P.M., Cowe E. Synonymous codon usage in Saccharomyces-Cerevisiae. Yeast 1991, 7:657-678.
-
(1991)
Yeast
, vol.7
, pp. 657-678
-
-
Sharp, P.M.1
Cowe, E.2
-
66
-
-
0036364468
-
Immune evasion in human papillomavirus-associated cervical cancer 1
-
Tindle R.W. Immune evasion in human papillomavirus-associated cervical cancer 1. Nat. Rev. Cancer 2002, 2:59-65.
-
(2002)
Nat. Rev. Cancer
, vol.2
, pp. 59-65
-
-
Tindle, R.W.1
-
67
-
-
84875254678
-
Are synonymous codons indeed synonymous?
-
Ref Type: Generic
-
Venetianer Pal Are synonymous codons indeed synonymous?. Biomol. Concepts 2012, 3(1):21-28. Ref Type: Generic.
-
(2012)
Biomol. Concepts
, vol.3
, Issue.1
, pp. 21-28
-
-
Venetianer, P.1
-
68
-
-
76149095944
-
GroEL dependency affects codon usage-support for a critical role of misfolding in gene evolution
-
Warnecke T., Hurst L.D. GroEL dependency affects codon usage-support for a critical role of misfolding in gene evolution. Mol. Syst. Biol. 2010, 6:340.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 340
-
-
Warnecke, T.1
Hurst, L.D.2
-
69
-
-
71049150410
-
Differential regulation of mRNA stability controls the transient expression of genes encoding Drosophila antimicrobial peptide with distinct immune response characteristics
-
Wei Y., Xiao Q., Zhang T., Mou Z., You J., Ma W.J. Differential regulation of mRNA stability controls the transient expression of genes encoding Drosophila antimicrobial peptide with distinct immune response characteristics. Nucleic Acids Res. 2009, 37:6550-6561.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 6550-6561
-
-
Wei, Y.1
Xiao, Q.2
Zhang, T.3
Mou, Z.4
You, J.5
Ma, W.J.6
-
70
-
-
33644812400
-
Characterization of immune responses during regression of rabbit oral papillomavirus infections 1
-
Wilgenburg B.J., Budgeon L.R., Lang C.M., Griffith J.W., Christensen N.D. Characterization of immune responses during regression of rabbit oral papillomavirus infections 1. Comp. Med. 2005, 55:431-439.
-
(2005)
Comp. Med.
, vol.55
, pp. 431-439
-
-
Wilgenburg, B.J.1
Budgeon, L.R.2
Lang, C.M.3
Griffith, J.W.4
Christensen, N.D.5
-
71
-
-
25444502301
-
Gene codon composition determines differentiation-dependent expression of a viral capsid gene in keratinocytes in vitro and in vivo
-
Zhao K.N., Gu W., Fang N.X., Saunders N.A., Frazer I.H. Gene codon composition determines differentiation-dependent expression of a viral capsid gene in keratinocytes in vitro and in vivo. Mol. Cell Biol. 2005, 25:8643-8655.
-
(2005)
Mol. Cell Biol.
, vol.25
, pp. 8643-8655
-
-
Zhao, K.N.1
Gu, W.2
Fang, N.X.3
Saunders, N.A.4
Frazer, I.H.5
-
72
-
-
0345490760
-
Codon usage bias and A+T content variation in human papillomavirus genomes
-
Zhao K.N., Liu W.J., Frazer I.H. Codon usage bias and A+T content variation in human papillomavirus genomes. Virus Res. 2003, 98:95-104.
-
(2003)
Virus Res.
, vol.98
, pp. 95-104
-
-
Zhao, K.N.1
Liu, W.J.2
Frazer, I.H.3
-
73
-
-
80655127810
-
Regulation of cellular miRNA expression by human papillomaviruses 1
-
Zheng Z.M., Wang X. Regulation of cellular miRNA expression by human papillomaviruses 1. Biochim. Biophys. Acta 2011, 1809:668-677.
-
(2011)
Biochim. Biophys. Acta
, vol.1809
, pp. 668-677
-
-
Zheng, Z.M.1
Wang, X.2
-
74
-
-
0345188623
-
Papillomavirus capsid protein expression level depends on the match between codon usage and tRNA availability
-
Zhou J., Liu W.J., Peng S.W., Sun X.Y., Frazer I. Papillomavirus capsid protein expression level depends on the match between codon usage and tRNA availability. J. Virol. 1999, 73:4972-4982.
-
(1999)
J. Virol.
, vol.73
, pp. 4972-4982
-
-
Zhou, J.1
Liu, W.J.2
Peng, S.W.3
Sun, X.Y.4
Frazer, I.5
-
75
-
-
67649356943
-
Translationally optimal codons associate with structurally sensitive sites in proteins 1
-
Zhou T., Weems M., Wilke C.O. Translationally optimal codons associate with structurally sensitive sites in proteins 1. Mol. Biol. Evol. 2009, 26:1571-1580.
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 1571-1580
-
-
Zhou, T.1
Weems, M.2
Wilke, C.O.3
-
76
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 2003, 31:3406-3415.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
|