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Volumn 26, Issue 7, 2009, Pages 1571-1580

Translationally optimal codons associate with structurally sensitive sites in proteins

Author keywords

Codon usage bias; Optimal codon; Protein evolution; Protein structure; Translational accuracy selection

Indexed keywords

AMINO ACID;

EID: 67649356943     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msp070     Document Type: Article
Times cited : (163)

References (77)
  • 1
    • 0028220048 scopus 로고
    • Synonymous codon usage in Drosophila melanogaster: Natural selection and translational accuracy
    • Akashi H. 1994. Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy. Genetics. 136:927-935.
    • (1994) Genetics , vol.136 , pp. 927-935
    • Akashi, H.1
  • 2
    • 0031738130 scopus 로고    scopus 로고
    • Translational selection and molecular evolution
    • Akashi H, Eyre-Walker A. 1998. Translational selection and molecular evolution. Curr Opin Genet Dev. 8:688-693.
    • (1998) Curr Opin Genet Dev , vol.8 , pp. 688-693
    • Akashi, H.1    Eyre-Walker, A.2
  • 3
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Series B. 57:289-300.
    • (1995) J R Stat Soc Series B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 4
    • 33748143748 scopus 로고    scopus 로고
    • Structural determinants of the rate of protein evolution in yeast
    • Bloom JD, Drummond DA, Arnold FH, Wilke CO. 2006. Structural determinants of the rate of protein evolution in yeast. Mol Biol Evol. 23:1751-1761.
    • (2006) Mol Biol Evol , vol.23 , pp. 1751-1761
    • Bloom, J.D.1    Drummond, D.A.2    Arnold, F.H.3    Wilke, C.O.4
  • 7
    • 0033969946 scopus 로고    scopus 로고
    • Solvent accessibility and purifying selection within proteins of Escherichia coli and Salmonella enterica
    • Bustamante CD, Townsend JP, Hartl DL. 2000. Solvent accessibility and purifying selection within proteins of Escherichia coli and Salmonella enterica. Mol Biol Evol. 17:301-308.
    • (2000) Mol Biol Evol , vol.17 , pp. 301-308
    • Bustamante, C.D.1    Townsend, J.P.2    Hartl, D.L.3
  • 8
    • 17644370601 scopus 로고    scopus 로고
    • Biased codon usage near intronexon junctions: Selection on splicing enhancers, splice-site recognition or something else?
    • Chamary JV, Hurst LD. 2005a. Biased codon usage near intronexon junctions: selection on splicing enhancers, splice-site recognition or something else? Trends Genet. 21:256-259.
    • (2005) Trends Genet , vol.21 , pp. 256-259
    • Chamary, J.V.1    Hurst, L.D.2
  • 9
    • 30744432134 scopus 로고    scopus 로고
    • Evidence for selection on synonymous mutations affecting stability of mRNA secondary structure in mammals
    • Chamary JV, Hurst LD. 2005b. Evidence for selection on synonymous mutations affecting stability of mRNA secondary structure in mammals. Genome Biol. 6:R75.
    • (2005) Genome Biol , vol.6
    • Chamary, J.V.1    Hurst, L.D.2
  • 10
    • 3843068862 scopus 로고    scopus 로고
    • Selective and mutational patterns associated with gene expression in humans: Influences on synonymous composition and intron presence
    • Comeron JM. 2004. Selective and mutational patterns associated with gene expression in humans: influences on synonymous composition and intron presence. Genetics. 167:1293-1304.
    • (2004) Genetics , vol.167 , pp. 1293-1304
    • Comeron, J.M.1
  • 12
    • 2342648924 scopus 로고    scopus 로고
    • Integrating high-throughput and computational data elucidates bacterial networks
    • Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 429:92-96.
    • (2004) Nature , vol.429 , pp. 92-96
    • Covert, M.W.1    Knight, E.M.2    Reed, J.L.3    Herrgard, M.J.4    Palsson, B.O.5
  • 14
  • 15
    • 33846021292 scopus 로고    scopus 로고
    • Tissue-specific differences in human transfer RNA expression
    • Dittmar KA, Goodenbour JM, Pan T. 2006. Tissue-specific differences in human transfer RNA expression. PLoS Genet. 2:e221.
    • (2006) PLoS Genet , vol.2
    • Dittmar, K.A.1    Goodenbour, J.M.2    Pan, T.3
  • 16
    • 0030564828 scopus 로고    scopus 로고
    • Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates
    • Dong HJ, Nilsson L, Kurland CG. 1996. Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates. J Mol Biol. 260:649-663.
    • (1996) J Mol Biol , vol.260 , pp. 649-663
    • Dong, H.J.1    Nilsson, L.2    Kurland, C.G.3
  • 17
    • 30744441602 scopus 로고    scopus 로고
    • A single determinant dominates the rate of yeast protein evolution
    • Drummond DA, Raval A, Wilke CO. 2006. A single determinant dominates the rate of yeast protein evolution. Mol Biol Evol. 23:327-337.
    • (2006) Mol Biol Evol , vol.23 , pp. 327-337
    • Drummond, D.A.1    Raval, A.2    Wilke, C.O.3
  • 18
    • 47549097539 scopus 로고    scopus 로고
    • Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution
    • Drummond DA, Wilke CO. 2008. Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution. Cell. 134:341-352.
    • (2008) Cell , vol.134 , pp. 341-352
    • Drummond, D.A.1    Wilke, C.O.2
  • 19
    • 0036889468 scopus 로고    scopus 로고
    • Evolution of synonymous codon usage in metazoans
    • Duret L. 2002. Evolution of synonymous codon usage in metazoans. Curr Opin Genet Dev. 12:640-649.
    • (2002) Curr Opin Genet Dev , vol.12 , pp. 640-649
    • Duret, L.1
  • 20
    • 0033977618 scopus 로고    scopus 로고
    • Determinants of substitution rates in mammalian genes: Expression pattern affects selection intensity but not mutation rate
    • Duret L, Mouchiroud D. 2000. Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate. Mol Biol Evol. 17:68-74.
    • (2000) Mol Biol Evol , vol.17 , pp. 68-74
    • Duret, L.1    Mouchiroud, D.2
  • 21
    • 35748929071 scopus 로고    scopus 로고
    • Structural mapping of protein interactions reveals differences in evolutionary pressures correlated to mRNA level and protein abundance
    • Eames M, Kortemme T. 2007. Structural mapping of protein interactions reveals differences in evolutionary pressures correlated to mRNA level and protein abundance. Structure. 15:1442-1451.
    • (2007) Structure , vol.15 , pp. 1442-1451
    • Eames, M.1    Kortemme, T.2
  • 22
    • 3042666256 scopus 로고    scopus 로고
    • Muscle: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC. 2004. Muscle: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 23
    • 0031805465 scopus 로고    scopus 로고
    • Assessing the impact of secondary structure and solvent accessibility on protein evolution
    • Goldman N, Thorne JL, Jones DT. 1998. Assessing the impact of secondary structure and solvent accessibility on protein evolution. Genetics. 149:445-458.
    • (1998) Genetics , vol.149 , pp. 445-458
    • Goldman, N.1    Thorne, J.L.2    Jones, D.T.3
  • 24
    • 84993900552 scopus 로고    scopus 로고
    • Synonymous mutations break their silence
    • Goymer P. 2007. Synonymous mutations break their silence. Nat Rev Genet. 8:92.
    • (2007) Nat Rev Genet , vol.8 , pp. 92
    • Goymer, P.1
  • 25
    • 33846033844 scopus 로고    scopus 로고
    • Greene LH, Lewis TE, Addou S, et al. (14 co-authors). 2007. The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution. Nucleic Acids Res. 35:D291-D297.
    • Greene LH, Lewis TE, Addou S, et al. (14 co-authors). 2007. The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution. Nucleic Acids Res. 35:D291-D297.
  • 26
    • 0842307105 scopus 로고    scopus 로고
    • The relationship between synonymous codon usage and protein structure in Escherichia coli and Homo sapiens
    • Gu W, Zhou T, Ma J, Sun X, Lu Z. 2004. The relationship between synonymous codon usage and protein structure in Escherichia coli and Homo sapiens. Biosystems. 73:89-97.
    • (2004) Biosystems , vol.73 , pp. 89-97
    • Gu, W.1    Zhou, T.2    Ma, J.3    Sun, X.4    Lu, Z.5
  • 27
    • 3042681604 scopus 로고    scopus 로고
    • Protein tolerance to random amino acid change
    • Guo HH, Choe J, Loeb LA. 2004. Protein tolerance to random amino acid change. Proc Natl Acad Sci USA. 101: 9205-9210.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 9205-9210
    • Guo, H.H.1    Choe, J.2    Loeb, L.A.3
  • 28
    • 33751371333 scopus 로고    scopus 로고
    • Hoede C, Denamur E, Tenaillon O. 2006. Selection acts on DNA secondary structures to decrease transcriptional mutagenesis. PLoS Genetics. 2:e176.
    • Hoede C, Denamur E, Tenaillon O. 2006. Selection acts on DNA secondary structures to decrease transcriptional mutagenesis. PLoS Genetics. 2:e176.
  • 30
    • 0019824131 scopus 로고
    • Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system
    • Ikemura T. 1981. Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: a proposal for a synonymous codon choice that is optimal for the E. coli translational system. J Mol Biol. 151:389-409.
    • (1981) J Mol Biol , vol.151 , pp. 389-409
    • Ikemura, T.1
  • 31
    • 0021958933 scopus 로고
    • Codon usage and tRNA content in unicellular and multicellular organisms
    • Ikemura T. 1985. Codon usage and tRNA content in unicellular and multicellular organisms. Mol Biol Evol. 2:13-34.
    • (1985) Mol Biol Evol , vol.2 , pp. 13-34
    • Ikemura, T.1
  • 32
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
    • Kabsch W, Sander C. 1983. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers. 22:2577-2637.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 35
    • 33846588874 scopus 로고    scopus 로고
    • SNPs, silent but not invisible
    • Komar AA. 2007. SNPs, silent but not invisible. Science. 315:466-467.
    • (2007) Science , vol.315 , pp. 466-467
    • Komar, A.A.1
  • 36
    • 0032699491 scopus 로고    scopus 로고
    • Synonymous codon substitutions affect ribosome traffic and protein folding during in vitro translation
    • Komar AA, Lesnik T, Reiss C. 1999. Synonymous codon substitutions affect ribosome traffic and protein folding during in vitro translation. FEBS Lett. 462:387-391.
    • (1999) FEBS Lett , vol.462 , pp. 387-391
    • Komar, A.A.1    Lesnik, T.2    Reiss, C.3
  • 37
    • 0037195144 scopus 로고    scopus 로고
    • A simple physical model for binding energy hot spots in protein-protein complexes
    • Kortemme T, Baker D. 2002. A simple physical model for binding energy hot spots in protein-protein complexes. Proc Natl Acad Sci USA. 99:14116-14121.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 14116-14121
    • Kortemme, T.1    Baker, D.2
  • 38
    • 3242879771 scopus 로고    scopus 로고
    • Computational alanine scanning of protein-protein interfaces
    • Kortemme T, Kim DE, Baker D. 2004. Computational alanine scanning of protein-protein interfaces. Science STKE. 219:l2.
    • (2004) Science STKE , vol.219
    • Kortemme, T.1    Kim, D.E.2    Baker, D.3
  • 39
    • 0028808763 scopus 로고
    • Context-dependent optimal substitution matrices
    • Koshi JM, Goldstein RA. 1995. Context-dependent optimal substitution matrices. Protein Eng. 8:641-645.
    • (1995) Protein Eng , vol.8 , pp. 641-645
    • Koshi, J.M.1    Goldstein, R.A.2
  • 40
    • 13444291526 scopus 로고    scopus 로고
    • Codon bias as a factor in regulating expression via translation rate in the human genome
    • Lavner Y, Kotlar D. 2005. Codon bias as a factor in regulating expression via translation rate in the human genome. Gene. 345:127-138.
    • (2005) Gene , vol.345 , pp. 127-138
    • Lavner, Y.1    Kotlar, D.2
  • 41
    • 17744376961 scopus 로고    scopus 로고
    • Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions
    • Lemos B, Bettencourt BR, Meiklejohn CD, Hartl DL. 2005. Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions. Mol Biol Evol. 22:1345-1354.
    • (2005) Mol Biol Evol , vol.22 , pp. 1345-1354
    • Lemos, B.1    Bettencourt, B.R.2    Meiklejohn, C.D.3    Hartl, D.L.4
  • 42
    • 0029913807 scopus 로고    scopus 로고
    • An evolutionary trace method defines binding surfaces common to protein families
    • Lichtarge O, Bourne HR, Cohen FE. 1996. An evolutionary trace method defines binding surfaces common to protein families. J Mol Biol. 257:342-358.
    • (1996) J Mol Biol , vol.257 , pp. 342-358
    • Lichtarge, O.1    Bourne, H.R.2    Cohen, F.E.3
  • 43
    • 33847305359 scopus 로고    scopus 로고
    • Differential translation efficiency of orthologous genes is involved in phenotypic divergence of yeast species
    • Man O, Pilpel Y. 2007. Differential translation efficiency of orthologous genes is involved in phenotypic divergence of yeast species. Nat Genet. 39:415-421.
    • (2007) Nat Genet , vol.39 , pp. 415-421
    • Man, O.1    Pilpel, Y.2
  • 44
    • 9844227496 scopus 로고
    • Chi-square tests with one degree of freedom; extensions of the Mantel-Haenszel procedure
    • Mantel N. 1963. Chi-square tests with one degree of freedom; extensions of the Mantel-Haenszel procedure. J Am Stat Assoc. 58:690-700.
    • (1963) J Am Stat Assoc , vol.58 , pp. 690-700
    • Mantel, N.1
  • 45
    • 84959801619 scopus 로고
    • Statistical aspects of the analysis of data from retrospective studies of disease
    • HaenszelW
    • Mantel N, HaenszelW. 1959. Statistical aspects of the analysis of data from retrospective studies of disease. J Natl Cancer Inst. 22:719-748.
    • (1959) J Natl Cancer Inst , vol.22 , pp. 719-748
    • Mantel, N.1
  • 46
    • 0028076771 scopus 로고
    • Genetic studies of the lac repressor. xiv. analysis of 4000 altered Escherichia coli lac repressors reveals essential and nonessential residues, as well as "spacers" which do not require a specific sequence
    • Markiewicz P, Kleina LG, Cruz C, Ehret S, Miller JH. 1994. Genetic studies of the lac repressor. xiv. analysis of 4000 altered Escherichia coli lac repressors reveals essential and nonessential residues, as well as "spacers" which do not require a specific sequence. J Mol Biol. 240:421-433.
    • (1994) J Mol Biol , vol.240 , pp. 421-433
    • Markiewicz, P.1    Kleina, L.G.2    Cruz, C.3    Ehret, S.4    Miller, J.H.5
  • 47
    • 0027255479 scopus 로고
    • Structural and genetic analysis of protein stability
    • Matthews BW. 1993. Structural and genetic analysis of protein stability. Annu Rev Biochem. 62:139-160.
    • (1993) Annu Rev Biochem , vol.62 , pp. 139-160
    • Matthews, B.W.1
  • 48
    • 0345062357 scopus 로고    scopus 로고
    • Universally conserved positions in protein folds: Reading evolutionary signals about stability, folding kinetics and function
    • Mirny LA, Shakhnovich EI. 1999. Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function. J Mol Biol. 291:177-196.
    • (1999) J Mol Biol , vol.291 , pp. 177-196
    • Mirny, L.A.1    Shakhnovich, E.I.2
  • 49
    • 0035957514 scopus 로고    scopus 로고
    • Evolutionary conservation of the folding nucleus
    • Mirny LA, Shakhnovich EI. 2001a. Evolutionary conservation of the folding nucleus. J Mol Biol. 308:123-129.
    • (2001) J Mol Biol , vol.308 , pp. 123-129
    • Mirny, L.A.1    Shakhnovich, E.I.2
  • 51
    • 0030731696 scopus 로고    scopus 로고
    • Codon usage bias and tRNA abundance in Drosophila
    • Moriyama EN, Powell JR. 1997. Codon usage bias and tRNA abundance in Drosophila. J Mol Evol. 45:514-523.
    • (1997) J Mol Evol , vol.45 , pp. 514-523
    • Moriyama, E.N.1    Powell, J.R.2
  • 52
    • 0037250308 scopus 로고    scopus 로고
    • PDB-REPRDB: A database of representative protein chains from the Protein Data Bank (PDB) in 2003
    • Noguchi T, Akiyama Y. 2003. PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB) in 2003. Nucleic Acids Res. 31:492-493.
    • (2003) Nucleic Acids Res , vol.31 , pp. 492-493
    • Noguchi, T.1    Akiyama, Y.2
  • 53
    • 0035172128 scopus 로고    scopus 로고
    • PDB-REPRDB: A database of representative protein chains from the Protein Data Bank (PDB)
    • Noguchi T, Matsuda H, Akiyama Y. 2001. PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB). Nucleic Acids Res. 29:219-220.
    • (2001) Nucleic Acids Res , vol.29 , pp. 219-220
    • Noguchi, T.1    Matsuda, H.2    Akiyama, Y.3
  • 55
    • 0037382368 scopus 로고    scopus 로고
    • Tracing specific synonymous codon-secondary structure correlations through evolution
    • Orešič M, Dehn M, Korenblum D, Shalloway D. 2003. Tracing specific synonymous codon-secondary structure correlations through evolution. J Mol Evol. 56:473-484.
    • (2003) J Mol Evol , vol.56 , pp. 473-484
    • Orešič, M.1    Dehn, M.2    Korenblum, D.3    Shalloway, D.4
  • 56
    • 0032493780 scopus 로고    scopus 로고
    • Specific correlations between relative synonymous codon usage and protein secondary structure
    • Orešič M, Shalloway D. 1998. Specific correlations between relative synonymous codon usage and protein secondary structure. J Mol Biol. 281:31-48.
    • (1998) J Mol Biol , vol.281 , pp. 31-48
    • Orešič, M.1    Shalloway, D.2
  • 57
    • 0034978556 scopus 로고    scopus 로고
    • Highly expressed genes in yeast evolve slowly
    • Pal C, Papp B, Hurst LD. 2001. Highly expressed genes in yeast evolve slowly. Genetics. 158:927-931.
    • (2001) Genetics , vol.158 , pp. 927-931
    • Pal, C.1    Papp, B.2    Hurst, L.D.3
  • 58
    • 30744469841 scopus 로고    scopus 로고
    • Evidence for purifying selection against synonymous mutations in mammalian exonic splicing enhancers
    • Parmley J, Chamary J, Hurst L. 2006. Evidence for purifying selection against synonymous mutations in mammalian exonic splicing enhancers. Mol Biol Evol. 23:301-309.
    • (2006) Mol Biol Evol , vol.23 , pp. 301-309
    • Parmley, J.1    Chamary, J.2    Hurst, L.3
  • 59
    • 5344244656 scopus 로고    scopus 로고
    • R Development Core Team, Vienna Austria, R Foundation for Statistical Computing. ISBN 3-900051-07-0
    • R Development Core Team. 2008. R: a language and environment for statistical computing. Vienna (Austria): R Foundation for Statistical Computing. ISBN 3-900051-07-0.
    • (2008) R: A language and environment for statistical computing
  • 60
    • 34547153905 scopus 로고    scopus 로고
    • The selection of acceptable protein mutations
    • Sasidharan R, Chothia C. 2007. The selection of acceptable protein mutations. Proc Natl Acad Sci USA. 104:10080-10085.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 10080-10085
    • Sasidharan, R.1    Chothia, C.2
  • 61
    • 0038675537 scopus 로고    scopus 로고
    • Conserved residue clustering and protein structure prediction
    • Schueler-Furman O, Baker D. 2003. Conserved residue clustering and protein structure prediction. Proteins. 52:225-235.
    • (2003) Proteins , vol.52 , pp. 225-235
    • Schueler-Furman, O.1    Baker, D.2
  • 62
    • 0023046874 scopus 로고
    • Codon usage in yeast: Cluster analysis clearly differentiates highly and lowly expressed genes
    • Sharp PM, Tuohy T, Mosurski K. 1986. Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes. Nucleic Acids Res. 14:5125-5143.
    • (1986) Nucleic Acids Res , vol.14 , pp. 5125-5143
    • Sharp, P.M.1    Tuohy, T.2    Mosurski, K.3
  • 63
    • 7444233156 scopus 로고    scopus 로고
    • Stolc V, Gauhar Z, Mason C, et al. (12 co-authors). 2004. A gene expression map for the euchromatic genome of Drosophila melanogaster. Science. 306:655-660.
    • Stolc V, Gauhar Z, Mason C, et al. (12 co-authors). 2004. A gene expression map for the euchromatic genome of Drosophila melanogaster. Science. 306:655-660.
  • 64
    • 51649116095 scopus 로고    scopus 로고
    • Conflicting selection pressures on synonymous codon use in yeast suggest selection on mRNA secondary structures
    • Stoletzki N. 2008. Conflicting selection pressures on synonymous codon use in yeast suggest selection on mRNA secondary structures. BMC Evol Biol. 8:224.
    • (2008) BMC Evol Biol , vol.8 , pp. 224
    • Stoletzki, N.1
  • 65
    • 33846786904 scopus 로고    scopus 로고
    • Synonymous codon usage in Escherichia coli: Selection for translational accuracy
    • Stoletzki N, Eyre-Walker A. 2007. Synonymous codon usage in Escherichia coli: selection for translational accuracy. Mol Biol Evol. 24:374-381.
    • (2007) Mol Biol Evol , vol.24 , pp. 374-381
    • Stoletzki, N.1    Eyre-Walker, A.2
  • 66
    • 11144358198 scopus 로고    scopus 로고
    • Su AI, Wiltshire T, Batalov S, et al. (13 co-authors). 2004. A gene atlas of the mouse and human protein-encoding transcriptomes. Proc Natl Acad Sci USA. 101:6062-6067.
    • Su AI, Wiltshire T, Batalov S, et al. (13 co-authors). 2004. A gene atlas of the mouse and human protein-encoding transcriptomes. Proc Natl Acad Sci USA. 101:6062-6067.
  • 67
    • 0029908504 scopus 로고    scopus 로고
    • Protein secondary structural types are differentially coded on messenger RNA
    • Thanaraj TA, Argos P. 1996a. Protein secondary structural types are differentially coded on messenger RNA. Protein Sci. 5:1973-1983.
    • (1996) Protein Sci , vol.5 , pp. 1973-1983
    • Thanaraj, T.A.1    Argos, P.2
  • 68
    • 0030018101 scopus 로고    scopus 로고
    • Ribosome-mediated translational pause and protein domain organization
    • Thanaraj TA, Argos P. 1996b. Ribosome-mediated translational pause and protein domain organization. Protein Sci. 5:1594-1612.
    • (1996) Protein Sci , vol.5 , pp. 1594-1612
    • Thanaraj, T.A.1    Argos, P.2
  • 69
    • 34248674895 scopus 로고    scopus 로고
    • The stability effects of protein mutations appear to be universally distributed
    • Tokuriki N, Stricher F, Schymkowitz J, Serrano L, Tawfik DS. 2007. The stability effects of protein mutations appear to be universally distributed. J Mol Biol. 369:1318-1332.
    • (2007) J Mol Biol , vol.369 , pp. 1318-1332
    • Tokuriki, N.1    Stricher, F.2    Schymkowitz, J.3    Serrano, L.4    Tawfik, D.S.5
  • 70
    • 0142092546 scopus 로고    scopus 로고
    • The signature of selection mediated by expression on human genes
    • Urrutia AO, Hurst LD. 2003. The signature of selection mediated by expression on human genes. Genome Res. 13:2260-2264.
    • (2003) Genome Res , vol.13 , pp. 2260-2264
    • Urrutia, A.O.1    Hurst, L.D.2
  • 71
    • 0037388031 scopus 로고    scopus 로고
    • DNA helix: The importance of being GC-rich
    • Vinogradov AE. 2003. DNA helix: the importance of being GC-rich. Nucleic Acids Res. 31:1838-1844.
    • (2003) Nucleic Acids Res , vol.31 , pp. 1838-1844
    • Vinogradov, A.E.1
  • 72
    • 37549008368 scopus 로고    scopus 로고
    • Evidence for a trade-off between translational efficiency and splicing regulation in determining synonymous codon sauge in Drosophila melanogaster
    • Warnecke T, Hurst LD. 2007. Evidence for a trade-off between translational efficiency and splicing regulation in determining synonymous codon sauge in Drosophila melanogaster. Mol Biol Evol. 24:2755-2762.
    • (2007) Mol Biol Evol , vol.24 , pp. 2755-2762
    • Warnecke, T.1    Hurst, L.D.2
  • 73
    • 44349120609 scopus 로고    scopus 로고
    • Analysis of the distribution of functionally relevant rare codons
    • Widmann M, Clairo M, Dippon J, Pleiss J. 2008. Analysis of the distribution of functionally relevant rare codons. BMC Genomics. 9:207.
    • (2008) BMC Genomics , vol.9 , pp. 207
    • Widmann, M.1    Clairo, M.2    Dippon, J.3    Pleiss, J.4
  • 74
    • 33746192317 scopus 로고    scopus 로고
    • Unifying measures of gene function and evolution
    • Wolf YI, Carmel L, Koonin EV. 2006. Unifying measures of gene function and evolution. Proc Biol Sci. 273:1507-1515.
    • (2006) Proc Biol Sci , vol.273 , pp. 1507-1515
    • Wolf, Y.I.1    Carmel, L.2    Koonin, E.V.3
  • 75
    • 4143122090 scopus 로고    scopus 로고
    • Effects of gene expression on molecular evolution in Arabidopsis thaliana and Arabidopsis lyrata
    • Wright SI, Yau CB, Looseley M, Meyers BC. 2004. Effects of gene expression on molecular evolution in Arabidopsis thaliana and Arabidopsis lyrata. Mol Biol Evol. 21:1719-1726.
    • (2004) Mol Biol Evol , vol.21 , pp. 1719-1726
    • Wright, S.I.1    Yau, C.B.2    Looseley, M.3    Meyers, B.C.4
  • 76
    • 0029970817 scopus 로고    scopus 로고
    • Maximizing transcription efficiency causes codon usage bias
    • Xia X. 1996. Maximizing transcription efficiency causes codon usage bias. Genetics. 144:1309-1320.
    • (1996) Genetics , vol.144 , pp. 1309-1320
    • Xia, X.1
  • 77
    • 0031697801 scopus 로고    scopus 로고
    • The relationship between synonymous codon usage and protein structure
    • Xie T, Ding D. 1998. The relationship between synonymous codon usage and protein structure. FEBS Lett. 434:93-96.
    • (1998) FEBS Lett , vol.434 , pp. 93-96
    • Xie, T.1    Ding, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.