메뉴 건너뛰기




Volumn 3, Issue 8, 2008, Pages

CRPV genomes with synonymous codon optimizations in the CRPV E7 gene show phenotypic differences in growth and altered immunity upon E7 vaccination

Author keywords

[No Author keywords available]

Indexed keywords

DNA; PROTEIN E7; RNA; MESSENGER RNA; ONCOPROTEIN; VIRUS PROTEIN; VIRUS RNA;

EID: 51449085986     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0002947     Document Type: Article
Times cited : (17)

References (43)
  • 1
    • 33745654553 scopus 로고    scopus 로고
    • Evolutionary basis of codon usage and nucleotide composition bias in vertebrate DNA viruses
    • Shackelton LA, Parrish CR, Holmes EC (2006) Evolutionary basis of codon usage and nucleotide composition bias in vertebrate DNA viruses. J. Mol. Evol. 62: 551-563.
    • (2006) J. Mol. Evol , vol.62 , pp. 551-563
    • Shackelton, L.A.1    Parrish, C.R.2    Holmes, E.C.3
  • 2
    • 0345188623 scopus 로고    scopus 로고
    • Papillomavirus capsid protein expression level depends on the match between codon usage and tRNA availability
    • Zhou J, Liu WJ, Peng SW, Sun XY, Frazer I (1999) Papillomavirus capsid protein expression level depends on the match between codon usage and tRNA availability. Journal of Virology 73: 4972-4982.
    • (1999) Journal of Virology , vol.73 , pp. 4972-4982
    • Zhou, J.1    Liu, W.J.2    Peng, S.W.3    Sun, X.Y.4    Frazer, I.5
  • 3
    • 0036364468 scopus 로고    scopus 로고
    • Immune evasion in human papillomavirus-associated cervical cancer
    • Tindle RW (2002) Immune evasion in human papillomavirus-associated cervical cancer. Nature Rev.Cancer 2: 59-65.
    • (2002) Nature Rev.Cancer , vol.2 , pp. 59-65
    • Tindle, R.W.1
  • 4
    • 34250212837 scopus 로고    scopus 로고
    • How do synonymous mutations affect fitness?
    • Parmley JL, Hurst LD (2007) How do synonymous mutations affect fitness? Bioessays 29: 515-519.
    • (2007) Bioessays , vol.29 , pp. 515-519
    • Parmley, J.L.1    Hurst, L.D.2
  • 5
    • 31144465926 scopus 로고    scopus 로고
    • Hearing silence: Non-neutral evolution at synonymous sites in mammals
    • Chamary JV, Parmley JL, Hurst LD (2006) Hearing silence: non-neutral evolution at synonymous sites in mammals. Nat.Rev.Genet. 7: 98-108.
    • (2006) Nat.Rev.Genet , vol.7 , pp. 98-108
    • Chamary, J.V.1    Parmley, J.L.2    Hurst, L.D.3
  • 7
    • 0036261716 scopus 로고    scopus 로고
    • Regulation of c-myc mRNA decay by translational pausing in a coding region instability determinant
    • Lemm I, Ross J (2002) Regulation of c-myc mRNA decay by translational pausing in a coding region instability determinant. Molecular and Cellular Biology 22: 3959-3969.
    • (2002) Molecular and Cellular Biology , vol.22 , pp. 3959-3969
    • Lemm, I.1    Ross, J.2
  • 8
    • 13444291526 scopus 로고    scopus 로고
    • Codon bias as a factor in regulating expression via translation rate in the human genome
    • Lavner Y, Kotlar D (2005) Codon bias as a factor in regulating expression via translation rate in the human genome. Gene 345: 127-138.
    • (2005) Gene , vol.345 , pp. 127-138
    • Lavner, Y.1    Kotlar, D.2
  • 9
    • 33846504706 scopus 로고    scopus 로고
    • A "silent" polymorphism in the MDR1 gene changes substrate specificity
    • Kimchi-Sarfaty C, Oh JM, Kim IW, Sauna ZE, Calcagno AM, et al. (2007) A "silent" polymorphism in the MDR1 gene changes substrate specificity. Science 315: 525-528.
    • (2007) Science , vol.315 , pp. 525-528
    • Kimchi-Sarfaty, C.1    Oh, J.M.2    Kim, I.W.3    Sauna, Z.E.4    Calcagno, A.M.5
  • 10
    • 0032699491 scopus 로고    scopus 로고
    • Synonymous codon substitutions affect ribosome traffic and protein folding during in vitro translation
    • Komar AA, Lesnik T, Reiss C (1999) Synonymous codon substitutions affect ribosome traffic and protein folding during in vitro translation. Febs Letters 462: 387-391.
    • (1999) Febs Letters , vol.462 , pp. 387-391
    • Komar, A.A.1    Lesnik, T.2    Reiss, C.3
  • 13
    • 25444502301 scopus 로고    scopus 로고
    • Gene codon composition determines differentiation-dependent expression of a viral capsid gene in keratinocytes in vitro and in vivo
    • Zhao KN, Gu W, Fang NX, Saunders NA, Frazer IH (2005) Gene codon composition determines differentiation-dependent expression of a viral capsid gene in keratinocytes in vitro and in vivo. Mol.Cell Biol. 25: 8643-8655.
    • (2005) Mol.Cell Biol , vol.25 , pp. 8643-8655
    • Zhao, K.N.1    Gu, W.2    Fang, N.X.3    Saunders, N.A.4    Frazer, I.H.5
  • 14
    • 34547857749 scopus 로고    scopus 로고
    • Generalized substitution or isoencoding codons shortens the duration of papillomavirus L1 protein expression in transiently gene-transfected keratinocytes due to cell differentiation
    • Gu W, Ding J, Wang X, de Kluyver RL, Saunders NA, et al. (2007) Generalized substitution or isoencoding codons shortens the duration of papillomavirus L1 protein expression in transiently gene-transfected keratinocytes due to cell differentiation. Nucleic Acids Res. 35: 4820-4832.
    • (2007) Nucleic Acids Res , vol.35 , pp. 4820-4832
    • Gu, W.1    Ding, J.2    Wang, X.3    de Kluyver, R.L.4    Saunders, N.A.5
  • 15
    • 4344645596 scopus 로고    scopus 로고
    • tRNASer(CGA) differentially regulates expression of wild-type and codon-modified papillomavirus L1 genes
    • Gu W, Li M, Zhao WM, Fang NX, Bu S, et al. (2004) tRNASer(CGA) differentially regulates expression of wild-type and codon-modified papillomavirus L1 genes. Nucleic Acids Res. 32: 4448-4461.
    • (2004) Nucleic Acids Res , vol.32 , pp. 4448-4461
    • Gu, W.1    Li, M.2    Zhao, W.M.3    Fang, N.X.4    Bu, S.5
  • 16
    • 19544391975 scopus 로고    scopus 로고
    • A synonymous SNP of the corneodesmosin gene leads to increased mRNA stability and demonstrates association with psoriasis across diverse ethnic groups
    • Capon F, Allen MH, Ameen M, Burden AD, Tillman D, et al. (2004) A synonymous SNP of the corneodesmosin gene leads to increased mRNA stability and demonstrates association with psoriasis across diverse ethnic groups. Human Molecular Genetics 13: 2361-2368.
    • (2004) Human Molecular Genetics , vol.13 , pp. 2361-2368
    • Capon, F.1    Allen, M.H.2    Ameen, M.3    Burden, A.D.4    Tillman, D.5
  • 17
    • 33845899137 scopus 로고    scopus 로고
    • Human catechol-O-methyltransferase haplotypes modulate protein expression by altering mRNA secondary structine
    • Nackley AG, Shabalina SA, Tchivileva IE, Satterfield K, Korchynskyi O, et al. (2006) Human catechol-O-methyltransferase haplotypes modulate protein expression by altering mRNA secondary structine. Science 314: 1930-1933.
    • (2006) Science , vol.314 , pp. 1930-1933
    • Nackley, A.G.1    Shabalina, S.A.2    Tchivileva, I.E.3    Satterfield, K.4    Korchynskyi, O.5
  • 18
    • 0037320652 scopus 로고    scopus 로고
    • Synonymous mutations in the human dopamine receptor D2 (DRD2) affect mRNA stability and synthesis of the receptor
    • Duan JB, Wainwright MS, Comeron JM, Saitou N, Sanders AR, et al. (2003) Synonymous mutations in the human dopamine receptor D2 (DRD2) affect mRNA stability and synthesis of the receptor. Human Molecular Genetics 12: 205-216.
    • (2003) Human Molecular Genetics , vol.12 , pp. 205-216
    • Duan, J.B.1    Wainwright, M.S.2    Comeron, J.M.3    Saitou, N.4    Sanders, A.R.5
  • 19
    • 0346104825 scopus 로고    scopus 로고
    • Mammalian mutation pressure, synonymous codon choice, and mRNA degradation
    • Duan JB, Antezana MA (2003) Mammalian mutation pressure, synonymous codon choice, and mRNA degradation. Journal of Molecular Evolution 57: 694-701.
    • (2003) Journal of Molecular Evolution , vol.57 , pp. 694-701
    • Duan, J.B.1    Antezana, M.A.2
  • 20
    • 33646838978 scopus 로고    scopus 로고
    • A periodic pattern of mRNA secondary structure created by the genetic code
    • Shabalina SA, Ogurtsov AY, Spiridonov NA (2006) A periodic pattern of mRNA secondary structure created by the genetic code. Nucleic Acids Research 34 (8): 2428-2437.
    • (2006) Nucleic Acids Research , vol.34 , Issue.8 , pp. 2428-2437
    • Shabalina, S.A.1    Ogurtsov, A.Y.2    Spiridonov, N.A.3
  • 21
    • 30744432134 scopus 로고    scopus 로고
    • Evidence for selection on synonymous mutations affecting stability of mRNA secondary structure in mammals
    • Chamary JV, Hurst LD (2005) Evidence for selection on synonymous mutations affecting stability of mRNA secondary structure in mammals. Genome Biology 6 (9).
    • (2005) Genome Biology , vol.6 , Issue.9
    • Chamary, J.V.1    Hurst, L.D.2
  • 22
    • 19344367734 scopus 로고    scopus 로고
    • Single nucleotide polymorphism-based validation of exonic splicing enhancer
    • Fairbrother WG, Holste D, Burge CB, Sharp PA (2004) Single nucleotide polymorphism-based validation of exonic splicing enhancer. Plos Biology 2 (9): 1388-1395.
    • (2004) Plos Biology , vol.2 , Issue.9 , pp. 1388-1395
    • Fairbrother, W.G.1    Holste, D.2    Burge, C.B.3    Sharp, P.A.4
  • 23
    • 3042742751 scopus 로고    scopus 로고
    • Experimental reduction of codon bias in the Drosophila alcohol dehydrogenase gene results in decreased ethanol tolerance of adult flies
    • Carlini DB (2004) Experimental reduction of codon bias in the Drosophila alcohol dehydrogenase gene results in decreased ethanol tolerance of adult flies. Journal of Evolutionary Biology 17: 779-785.
    • (2004) Journal of Evolutionary Biology , vol.17 , pp. 779-785
    • Carlini, D.B.1
  • 24
    • 33748923860 scopus 로고    scopus 로고
    • Reduction of the rate of poliovirus protein synthesis through large-scale codon deoptimization causes attenuation of viral virulence by lowering specific infectivity
    • Mueller S, Papamichail D, Coleman JR, Skiena S, Wimmer E (2006) Reduction of the rate of poliovirus protein synthesis through large-scale codon deoptimization causes attenuation of viral virulence by lowering specific infectivity. Journal of Virology 80: 9687-9696.
    • (2006) Journal of Virology , vol.80 , pp. 9687-9696
    • Mueller, S.1    Papamichail, D.2    Coleman, J.R.3    Skiena, S.4    Wimmer, E.5
  • 25
    • 33645215084 scopus 로고    scopus 로고
    • Modulation of poliovirus replicative fitness in HeLa cells by deoptimization of synonymous codon usage in the capsid region
    • Burns CC, Shaw J, Campagnoli R, Jorba J, Vincent A, et al. (2006) Modulation of poliovirus replicative fitness in HeLa cells by deoptimization of synonymous codon usage in the capsid region. Journal of Virology 80: 3259-3272.
    • (2006) Journal of Virology , vol.80 , pp. 3259-3272
    • Burns, C.C.1    Shaw, J.2    Campagnoli, R.3    Jorba, J.4    Vincent, A.5
  • 26
    • 0032786537 scopus 로고    scopus 로고
    • Protection of rabbits from viral challenge by gene gun-based intracutaneous vaccination with a combination of cottontail rabbit papillomavirus E1, E2, E6, and E7 genes
    • Han RC, Cladel NM, Reed CA, Peng XW, Christensen ND (1999) Protection of rabbits from viral challenge by gene gun-based intracutaneous vaccination with a combination of cottontail rabbit papillomavirus E1, E2, E6, and E7 genes. Journal of Virology 73: 7039-7043.
    • (1999) Journal of Virology , vol.73 , pp. 7039-7043
    • Han, R.C.1    Cladel, N.M.2    Reed, C.A.3    Peng, X.W.4    Christensen, N.D.5
  • 27
    • 0036317963 scopus 로고    scopus 로고
    • Ubiquitin-fused and/or multiple early genes from cottontail rabbit papillomavirus as DNA vaccines
    • Leachman SA, Shylankevich M, Slade MD, Levine D, Sundaram RK, et al. (2002) Ubiquitin-fused and/or multiple early genes from cottontail rabbit papillomavirus as DNA vaccines. J.Virol. 76: 7616-7624.
    • (2002) J.Virol , vol.76 , pp. 7616-7624
    • Leachman, S.A.1    Shylankevich, M.2    Slade, M.D.3    Levine, D.4    Sundaram, R.K.5
  • 28
    • 0033814225 scopus 로고    scopus 로고
    • DNA vaccination prevents and/or delays carcinoma development of papillomavirus-induced skin papillomas on rabbits
    • Han R, Cladel NM, Reed CA, Peng X, Budgeon LR (2000) DNA vaccination prevents and/or delays carcinoma development of papillomavirus-induced skin papillomas on rabbits. J.Virol. 74: 9712-9716.
    • (2000) J.Virol , vol.74 , pp. 9712-9716
    • Han, R.1    Cladel, N.M.2    Reed, C.A.3    Peng, X.4    Budgeon, L.R.5
  • 29
    • 0026074396 scopus 로고    scopus 로고
    • Human papillomavirus type 16 nucleoprotein E7 is a tumor rejection antigen
    • Chen L, Thomas-EK, Hu S.-L, Hellstrom I, Hellstrom KE (1999) Human papillomavirus type 16 nucleoprotein E7 is a tumor rejection antigen. Proc.Natl.Acad.Sci.USA 88: 110-114.
    • (1999) Proc.Natl.Acad.Sci.USA , vol.88 , pp. 110-114
    • Chen, L.1    EK, T.2    Hu, S.-L.3    Hellstrom, I.4    Hellstrom, K.E.5
  • 30
    • 2342548726 scopus 로고    scopus 로고
    • CpG-ODN-stimulated dendritic cells act as a potent adjuvant for E7 protein delivery to induce antigen-specific antitumour immunity in a HPV 16 E7-associated animal tumour model 543
    • Kim TG, Kim CH, Won EH, Bae SM, Ahn WS, et al. (2004) CpG-ODN-stimulated dendritic cells act as a potent adjuvant for E7 protein delivery to induce antigen-specific antitumour immunity in a HPV 16 E7-associated animal tumour model 543. Immunology 112 (1): 117-125.
    • (2004) Immunology , vol.112 , Issue.1 , pp. 117-125
    • Kim, T.G.1    Kim, C.H.2    Won, E.H.3    Bae, S.M.4    Ahn, W.S.5
  • 31
    • 3042723816 scopus 로고    scopus 로고
    • Phase 1/11 trial of immunogenicity of a human papillomavirus (HPV) type 16 E7 protein-based vaccine in women with oncogenic HPV-positive cervical intraepithelial neoplasia
    • Hallez S, Simon P, Maudoux F, Doyen J, Noel JC, et al. (2004) Phase 1/11 trial of immunogenicity of a human papillomavirus (HPV) type 16 E7 protein-based vaccine in women with oncogenic HPV-positive cervical intraepithelial neoplasia. Cancer Immunol.Immunother. 53 (7): 642-650.
    • (2004) Cancer Immunol.Immunother , vol.53 , Issue.7 , pp. 642-650
    • Hallez, S.1    Simon, P.2    Maudoux, F.3    Doyen, J.4    Noel, J.C.5
  • 32
    • 0036396551 scopus 로고    scopus 로고
    • Codon. modified human papillomavirus type 16 E7 DNA vaccine enhances cytotoxic T-lymphocyte induction and anti-tumour activity
    • Liu WJ, Gao F, Zhao KN, Zhao W, Fernando GJ, et al. (2002) Codon. modified human papillomavirus type 16 E7 DNA vaccine enhances cytotoxic T-lymphocyte induction and anti-tumour activity. Virology 301 (1): 43-52.
    • (2002) Virology , vol.301 , Issue.1 , pp. 43-52
    • Liu, W.J.1    Gao, F.2    Zhao, K.N.3    Zhao, W.4    Fernando, G.J.5
  • 33
    • 0345578684 scopus 로고    scopus 로고
    • A synthetic E7 gene of human papillomavirus type 16 that yields enhanced expression of the protein mammalian cells and is useful for DNA immunization studies
    • Cid-Arregui, Juarez AV, zur Hausen H (2003) A synthetic E7 gene of human papillomavirus type 16 that yields enhanced expression of the protein mammalian cells and is useful for DNA immunization studies. Journal of Virology 77 (8): 4928-4937.
    • (2003) Journal of Virology , vol.77 , Issue.8 , pp. 4928-4937
    • Arregui, C.1    Juarez, A.V.2    zur Hausen, H.3
  • 34
    • 33748334303 scopus 로고    scopus 로고
    • Codon optimized expression of HPV 16 E6 renders target cells susceptible to E6-specific CTL recognition
    • Samorski RGissmann, W. Osen W (2006) Codon optimized expression of HPV 16 E6 renders target cells susceptible to E6-specific CTL recognition Immunology Letters 107 (1): 41-49.
    • (2006) Immunology Letters , vol.107 , Issue.1 , pp. 41-49
    • Samorski RGissmann, W.1    Osen, W.2
  • 35
    • 0032957639 scopus 로고    scopus 로고
    • Two-stage PCR protocol allowing introduction of multiple mutations, deletions and insertions using QuikChange (TM) site-directed mutagenesis
    • Wang WY, Malcolm BA (1999) Two-stage PCR protocol allowing introduction of multiple mutations, deletions and insertions using QuikChange (TM) site-directed mutagenesis. Biotechniques 26: 680-682.
    • (1999) Biotechniques , vol.26 , pp. 680-682
    • Wang, W.Y.1    Malcolm, B.A.2
  • 36
    • 33751585380 scopus 로고    scopus 로고
    • An HLA-A2.1-Transgenic Rabbit Model to Study Immunity to Papillomavirus Infection
    • Hu J, Peng Y, Schell TD, Budgeon LR, Cladel NM, et al. (2006) An HLA-A2.1-Transgenic Rabbit Model to Study Immunity to Papillomavirus Infection. J.Immunol. 177: 8037-8045.
    • (2006) J.Immunol , vol.177 , pp. 8037-8045
    • Hu, J.1    Peng, Y.2    Schell, T.D.3    Budgeon, L.R.4    Cladel, N.M.5
  • 37
    • 0036776613 scopus 로고    scopus 로고
    • Protective immunity to rabbit oral and cutaneous papillomaviruses by immunization with short peptides of 12, the minor capsid protein
    • Embers ME, Budgeon LR, Pickel M, Christensen ND (2002) Protective immunity to rabbit oral and cutaneous papillomaviruses by immunization with short peptides of 12, the minor capsid protein. J.Virol. 76: 9798-9805.
    • (2002) J.Virol , vol.76 , pp. 9798-9805
    • Embers, M.E.1    Budgeon, L.R.2    Pickel, M.3    Christensen, N.D.4
  • 38
    • 0036281339 scopus 로고    scopus 로고
    • Intracutaneous DNA vaccination with the E8 gene of cottontail rabbit papillomavirus induces protective immunity against virus challenge in rabbits
    • Hu J, Han R, Cladel NM, Pickel MD, Christensen ND (2002) Intracutaneous DNA vaccination with the E8 gene of cottontail rabbit papillomavirus induces protective immunity against virus challenge in rabbits. J.Virol. 76: 6453-6459.
    • (2002) J.Virol , vol.76 , pp. 6453-6459
    • Hu, J.1    Han, R.2    Cladel, N.M.3    Pickel, M.D.4    Christensen, N.D.5
  • 39
    • 33846380208 scopus 로고    scopus 로고
    • Impact of genetic changes to the CRPV genome and their application to the study of pathogenesis in vivo
    • Hu J, Cladel NM, Balogh K, Budgenn L, Christensen ND (2007) Impact of genetic changes to the CRPV genome and their application to the study of pathogenesis in vivo. Virology 358: 384-390.
    • (2007) Virology , vol.358 , pp. 384-390
    • Hu, J.1    Cladel, N.M.2    Balogh, K.3    Budgenn, L.4    Christensen, N.D.5
  • 40
    • 0345490760 scopus 로고    scopus 로고
    • Codon usage bias and A+T content variation in human papillomavirus genomes
    • Zhao KN, Liu WJ, Frazer IH (2003) Codon usage bias and A+T content variation in human papillomavirus genomes. Vinis Res. 98: 95-104.
    • (2003) Vinis Res , vol.98 , pp. 95-104
    • Zhao, K.N.1    Liu, W.J.2    Frazer, I.H.3
  • 41
    • 3242676308 scopus 로고    scopus 로고
    • Codon optimization of the human papillomavirus 11(HPV 11) L1 gene leads to increased gene expression and formation of virus-like particles in mammalian epithelial cells
    • Mossadegh N, Gissmann L, Muller M, Zenigraf H, Alonso A, et al. (2004) Codon optimization of the human papillomavirus 11(HPV 11) L1 gene leads to increased gene expression and formation of virus-like particles in mammalian epithelial cells. Virology 326: 57-66.
    • (2004) Virology , vol.326 , pp. 57-66
    • Mossadegh, N.1    Gissmann, L.2    Muller, M.3    Zenigraf, H.4    Alonso, A.5
  • 42
    • 0141705294 scopus 로고    scopus 로고
    • Gao F, Li Y, Decker JM, Peyer FW, Bibollet-Ruche F, et al. (2003) Codon usage optimization of HIV type 1 subtype C gag, pol, env, and nef genes: in vitro expression and immune responses in DNA-vaccinated mice AIDS Res.Hum. Retroviruses 19: 817-823.
    • Gao F, Li Y, Decker JM, Peyer FW, Bibollet-Ruche F, et al. (2003) Codon usage optimization of HIV type 1 subtype C gag, pol, env, and nef genes: in vitro expression and immune responses in DNA-vaccinated mice AIDS Res.Hum. Retroviruses 19: 817-823.
  • 43
    • 0034604086 scopus 로고    scopus 로고
    • Induction of S phase and apoptosis by the human papillomavirus type 16 E7 protein are separable events in immortalized rodent fibroblasts
    • Alunni-Fabbroni M, Littlewood T, Deleu L, Caldeira S, Giarre M, et al. (2000) Induction of S phase and apoptosis by the human papillomavirus type 16 E7 protein are separable events in immortalized rodent fibroblasts. Oncogene 19: 2277-2285.
    • (2000) Oncogene , vol.19 , pp. 2277-2285
    • Alunni-Fabbroni, M.1    Littlewood, T.2    Deleu, L.3    Caldeira, S.4    Giarre, M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.