-
1
-
-
0016221697
-
Chromatin structure: A repeating unit of histones and DNA
-
Kornberg, R. D. (1974) Chromatin structure: A repeating unit of histones and DNA. Science 184, 868-871
-
(1974)
Science
, vol.184
, pp. 868-871
-
-
Kornberg, R.D.1
-
2
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2.8 Å resolution
-
DOI 10.1038/38444
-
Luger, K., Mader, A. W., Richmond, R. K., Sargent, D. F., and Richmond, T. J. (1997) Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature 389, 251-260 (Pubitemid 27406632)
-
(1997)
Nature
, vol.389
, Issue.6648
, pp. 251-260
-
-
Luger, K.1
Mader, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.J.5
-
3
-
-
84863773570
-
The epigenotype. 1942
-
Waddington, C. H. (2011) The epigenotype. 1942. Int. J. Epidemiol. 41, 10-13
-
(2011)
Int. J. Epidemiol.
, vol.41
, pp. 10-13
-
-
Waddington, C.H.1
-
4
-
-
64349095390
-
An operational definition of epigenetics
-
Berger, S. L., Kouzarides, T., Shiekhattar, R., and Shilatifard, A. (2009) An operational definition of epigenetics. Genes Dev. 23, 781-783
-
(2009)
Genes Dev.
, vol.23
, pp. 781-783
-
-
Berger, S.L.1
Kouzarides, T.2
Shiekhattar, R.3
Shilatifard, A.4
-
6
-
-
0035839136
-
Translating the histone code
-
DOI 10.1126/science.1063127
-
Jenuwein, T., and Allis, C. D. (2001) Translating the histone code. Science 293, 1074-1080 (Pubitemid 32758077)
-
(2001)
Science
, vol.293
, Issue.5532
, pp. 1074-1080
-
-
Jenuwein, T.1
Allis, C.D.2
-
7
-
-
33847076849
-
Chromatin Modifications and Their Function
-
DOI 10.1016/j.cell.2007.02.005, PII S0092867407001845
-
Kouzarides, T. (2007) Chromatin modifications and their function. Cell 128, 693-705 (Pubitemid 46273577)
-
(2007)
Cell
, vol.128
, Issue.4
, pp. 693-705
-
-
Kouzarides, T.1
-
8
-
-
77949678340
-
Chromatin structure and the inheritance of epigenetic information
-
Margueron, R., and Reinberg, D. (2010) Chromatin structure and the inheritance of epigenetic information. Nat. Rev. Genet. 11, 285-296
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 285-296
-
-
Margueron, R.1
Reinberg, D.2
-
9
-
-
23944462969
-
Genome-wide map of nucleosome acetylation and methylation in yeast
-
DOI 10.1016/j.cell.2005.06.026, PII S0092867405006458
-
Pokholok, D. K., Harbison, C. T., Levine, S., Cole, M., Hannett, N. M., Lee, T. I., Bell, G. W., Walker, K., Rolfe, P. A., Herbolsheimer, E., Zeitlinger, J., Lewitter, F., Gifford, D. K., and Young, R. A. (2005) Genome-wide map of nucleosome acetylation and methylation in yeast. Cell 122, 517-527 (Pubitemid 41191151)
-
(2005)
Cell
, vol.122
, Issue.4
, pp. 517-527
-
-
Pokholok, D.K.1
Harbison, C.T.2
Levine, S.3
Cole, M.4
Hannett, N.M.5
Tong, I.L.6
Bell, G.W.7
Walker, K.8
Rolfe, P.A.9
Herbolsheimer, E.10
Zeitlinger, J.11
Lewitter, F.12
Gifford, D.K.13
Young, R.A.14
-
10
-
-
34249026300
-
High-Resolution Profiling of Histone Methylations in the Human Genome
-
DOI 10.1016/j.cell.2007.05.009, PII S0092867407006009
-
Barski, A., Cuddapah, S., Cui, K., Roh, T. Y., Schones, D. E., Wang, Z., Wei, G., Chepelev, I., and Zhao, K. (2007) High-resolution profiling of histone methylations in the human genome. Cell 129, 823-837 (Pubitemid 46802390)
-
(2007)
Cell
, vol.129
, Issue.4
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.-Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
11
-
-
34250159524
-
Genome-wide mapping of in vivo protein-DNA interactions
-
DOI 10.1126/science.1141319
-
Johnson, D. S., Mortazavi, A., Myers, R. M., and Wold, B. (2007) Genomewide mapping of in vivo protein-DNA interactions. Science 316, 1497-1502 (Pubitemid 46906620)
-
(2007)
Science
, vol.316
, Issue.5830
, pp. 1497-1502
-
-
Johnson, D.S.1
Mortazavi, A.2
Myers, R.M.3
Wold, B.4
-
12
-
-
34547633677
-
Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing
-
DOI 10.1038/nmeth1068, PII NMETH1068
-
Robertson, G., Hirst, M., Bainbridge, M., Bilenky, M., Zhao, Y., Zeng, T., Euskirchen, G., Bernier, B., Varhol, R., Delaney, A., Thiessen, N., Griffith, O. L., He, A., Marra, M., Snyder, M., and Jones, S. (2007) Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing. Nat. Methods 4, 651-657 (Pubitemid 47202477)
-
(2007)
Nature Methods
, vol.4
, Issue.8
, pp. 651-657
-
-
Robertson, G.1
Hirst, M.2
Bainbridge, M.3
Bilenky, M.4
Zhao, Y.5
Zeng, T.6
Euskirchen, G.7
Bernier, B.8
Varhol, R.9
Delaney, A.10
Thiessen, N.11
Griffith, O.L.12
He, A.13
Marra, M.14
Snyder, M.15
Jones, S.16
-
13
-
-
33846809241
-
Characterization of histones and their post-translational modifications by mass spectrometry
-
DOI 10.1016/j.cbpa.2006.11.022, PII S1367593106001864
-
Garcia, B. A., Shabanowitz, J., and Hunt, D. F. (2007) Characterization of histones and their post-translational modifications by mass spectrometry. Curr. Opin. Chem. Biol. 11, 66-73 (Pubitemid 46216127)
-
(2007)
Current Opinion in Chemical Biology
, vol.11
, Issue.1
, pp. 66-73
-
-
Garcia, B.A.1
Shabanowitz, J.2
Hunt, D.F.3
-
14
-
-
75649094197
-
Mass spectrometry in epigenetic research
-
Beck, H. C. (2010) Mass spectrometry in epigenetic research. Methods Mol. Biol. 593, 263-282
-
(2010)
Methods Mol. Biol.
, vol.593
, pp. 263-282
-
-
Beck, H.C.1
-
15
-
-
77951855269
-
Quantitative mass spectrometry of histones H3.2 and H3.3 in Suz12-deficient mouse embryonic stem cells reveals distinct, dynamic post-translational modifications at Lys-27 and Lys-36
-
Jung, H. R., Pasini, D., Helin, K., and Jensen, O. N. (2010) Quantitative mass spectrometry of histones H3.2 and H3.3 in Suz12-deficient mouse embryonic stem cells reveals distinct, dynamic post-translational modifications at Lys-27 and Lys-36. Mol. Cell. Proteomics 9, 838-850
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 838-850
-
-
Jung, H.R.1
Pasini, D.2
Helin, K.3
Jensen, O.N.4
-
16
-
-
33847768829
-
Long-distance combinatorial linkage between methylation and acetylation on histone H3 N termini
-
DOI 10.1073/pnas.0610993104
-
Taverna, S. D., Ueberheide, B. M., Liu, Y., Tackett, A. J., Diaz, R. L., Shabanowitz, J., Chait, B. T., Hunt, D. F., and Allis, C. D. (2007) Longdistance combinatorial linkage between methylation and acetylation on histone H3 N termini. Proc. Natl. Acad. Sci. U.S.A. 104, 2086-2091 (Pubitemid 46391356)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.7
, pp. 2086-2091
-
-
Taverna, S.D.1
Ueberheide, B.M.2
Liu, Y.3
Tackett, A.J.4
Dias, R.L.5
Shabanowitz, J.6
Chait, B.T.7
Hunt, D.F.8
Allis, C.D.9
-
17
-
-
33644845973
-
Chromatomics: The analysis of the chromatome
-
Imhof, A., and Bonaldi, T. (2005) "Chromatomics": The analysis of the chromatome. Mol. Biosyst. 1, 112-116
-
(2005)
Mol. Biosyst.
, vol.1
, pp. 112-116
-
-
Imhof, A.1
Bonaldi, T.2
-
18
-
-
33847032960
-
The Mammalian Epigenome
-
DOI 10.1016/j.cell.2007.01.033, PII S0092867407001286
-
Bernstein, B. E., Meissner, A., and Lander, E. S. (2007) The mammalian epigenome. Cell 128, 669-681 (Pubitemid 46273573)
-
(2007)
Cell
, vol.128
, Issue.4
, pp. 669-681
-
-
Bernstein, B.E.1
Meissner, A.2
Lander, E.S.3
-
19
-
-
78751516164
-
Quantitative proteomics for epigenetics
-
Eberl, H. C., Mann, M., and Vermeulen, M. (2010) Quantitative proteomics for epigenetics. Chembiochem 12, 224-234
-
(2010)
Chembiochem
, vol.12
, pp. 224-234
-
-
Eberl, H.C.1
Mann, M.2
Vermeulen, M.3
-
20
-
-
34848911602
-
Selective Anchoring of TFIID to Nucleosomes by Trimethylation of Histone H3 Lysine 4
-
DOI 10.1016/j.cell.2007.08.016, PII S0092867407010793
-
Vermeulen, M., Mulder, K. W., Denissov, S., Pijnappel, W. W., van Schaik, F. M., Varier, R. A., Baltissen, M. P., Stunnenberg, H. G., Mann, M., and Timmers, H. T. (2007) Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4. Cell 131, 58-69 (Pubitemid 47498531)
-
(2007)
Cell
, vol.131
, Issue.1
, pp. 58-69
-
-
Vermeulen, M.1
Mulder, K.W.2
Denissov, S.3
Pijnappel, W.W.M.P.4
Van Schaik, F.M.A.5
Varier, R.A.6
Baltissen, M.P.A.7
Stunnenberg, H.G.8
Mann, M.9
Timmers, H.Th.M.10
-
21
-
-
77956643239
-
Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers
-
Vermeulen, M., Eberl, H. C., Matarese, F., Marks, H., Denissov, S., Butter, F., Lee, K. K., Olsen, J. V., Hyman, A. A., Stunnenberg, H. G., and Mann, M. (2010) Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers. Cell 142, 967-980
-
(2010)
Cell
, vol.142
, pp. 967-980
-
-
Vermeulen, M.1
Eberl, H.C.2
Matarese, F.3
Marks, H.4
Denissov, S.5
Butter, F.6
Lee, K.K.7
Olsen, J.V.8
Hyman, A.A.9
Stunnenberg, H.G.10
Mann, M.11
-
22
-
-
77958481159
-
Nucleosome-interacting proteins regulated by DNA and histone methylation
-
Bartke, T., Vermeulen, M., Xhemalce, B., Robson, S. C., Mann, M., and Kouzarides, T. (2010) Nucleosome-interacting proteins regulated by DNA and histone methylation. Cell 143, 470-484
-
(2010)
Cell
, vol.143
, pp. 470-484
-
-
Bartke, T.1
Vermeulen, M.2
Xhemalce, B.3
Robson, S.C.4
Mann, M.5
Kouzarides, T.6
-
23
-
-
80555136767
-
Chromatin affinity purification and quantitative mass spectrometry defining the interactome of histone modification patterns
-
Deleted In Proof
-
Nikolov, M., Stutzer, A., Mosch, K., Krasauskas, A., Soeroes, S., Stark, H., Urlaub, H., and Fischle, W. (2011) Chromatin affinity purification and quantitative mass spectrometry defining the interactome of histone modification patterns. Mol. Cell. Proteomics 10, M110.005371 Deleted In Proof
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Nikolov, M.1
Stutzer, A.2
Mosch, K.3
Krasauskas, A.4
Soeroes, S.5
Stark, H.6
Urlaub, H.7
Fischle, W.8
-
24
-
-
84863079871
-
Quantitative chemical proteomics approach to identify posttranslational modification-mediated protein-protein interactions
-
Deleted in proof 25. Li, X., Foley, E. A., Molloy, K. R., Li, Y., Chait, B. T., and Kapoor, T. M. (2012) Quantitative chemical proteomics approach to identify posttranslational modification-mediated protein-protein interactions. J. Am. Chem. Soc. 134, 1982-1985
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 1982-1985
-
-
Li, X.1
Foley, E.A.2
Molloy, K.R.3
Li, Y.4
Chait, B.T.5
Kapoor, T.M.6
-
25
-
-
77956167600
-
The protein composition of mitotic chromosomes determined using multiclassifier combinatorial proteomics
-
Ohta, S., Bukowski-Wills, J. C., Sanchez-Pulido, L., Alves Fde, L., Wood, L., Chen, Z. A., Platani, M., Fischer, L., Hudson, D. F., Ponting, C. P., Fukagawa, T., Earnshaw, W. C., and Rappsilber, J. (2010) The protein composition of mitotic chromosomes determined using multiclassifier combinatorial proteomics. Cell 142, 810-821
-
(2010)
Cell
, vol.142
, pp. 810-821
-
-
Ohta, S.1
Bukowski-Wills, J.C.2
Sanchez-Pulido, L.3
Alves Fde, L.4
Wood, L.5
Chen, Z.A.6
Platani, M.7
Fischer, L.8
Hudson, D.F.9
Ponting, C.P.10
Fukagawa, T.11
Earnshaw, W.C.12
Rappsilber, J.13
-
26
-
-
80052841943
-
Proteomic interrogation of human chromatin
-
Torrente, M. P., Zee, B. M., Young, N. L., Baliban, R. C., LeRoy, G., Floudas, C. A., Hake, S. B., and Garcia, B. A. (2011) Proteomic interrogation of human chromatin. PLoS One 6, e24747
-
(2011)
PLoS One
, vol.6
-
-
Torrente, M.P.1
Zee, B.M.2
Young, N.L.3
Baliban, R.C.4
LeRoy, G.5
Floudas, C.A.6
Hake, S.B.7
Garcia, B.A.8
-
27
-
-
66149100528
-
A novel proteomics approach for the discovery of chromatin-associated protein networks
-
Lambert, J. P., Mitchell, L., Rudner, A., Baetz, K., and Figeys, D. (2009) A novel proteomics approach for the discovery of chromatin-associated protein networks. Mol. Cell. Proteomics 8, 870-882
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 870-882
-
-
Lambert, J.P.1
Mitchell, L.2
Rudner, A.3
Baetz, K.4
Figeys, D.5
-
28
-
-
58149085861
-
Purification of proteins associated with specific genomic loci
-
Dejardin, J., and Kingston, R. E. (2009) Purification of proteins associated with specific genomic loci. Cell 136, 175-186
-
(2009)
Cell
, vol.136
, pp. 175-186
-
-
Dejardin, J.1
Kingston, R.E.2
-
29
-
-
84861174704
-
Quantitative assessment of chromatin immunoprecipitation grade antibodies directed against histone modifications reveals patterns of co-occurring marks on histone protein molecules
-
Peach, S. E., Rudomin, E. L., Udeshi, N. D., Carr, S. A., and Jaffe, J. D. (2012) Quantitative assessment of chromatin immunoprecipitation grade antibodies directed against histone modifications reveals patterns of co-occurring marks on histone protein molecules. Mol. Cell. Proteomics 11, 128-137
-
(2012)
Mol Cell Proteomics
, vol.11
, pp. 128-137
-
-
Peach, S.E.1
Rudomin, E.L.2
Udeshi, N.D.3
Carr, S.A.4
Jaffe, J.D.5
-
30
-
-
63849187827
-
Tyrosine dephosphorylation of H2AX modulates apoptosis and survival decisions
-
Cook, P. J., Ju, B. G., Telese, F., Wang, X., Glass, C. K., and Rosenfeld, M. G. (2009) Tyrosine dephosphorylation of H2AX modulates apoptosis and survival decisions. Nature 458, 591-596
-
(2009)
Nature
, vol.458
, pp. 591-596
-
-
Cook, P.J.1
Ju, B.G.2
Telese, F.3
Wang, X.4
Glass, C.K.5
Rosenfeld, M.G.6
-
31
-
-
0041668072
-
Immunoprecipitation of native chromatin: NChIP
-
DOI 10.1016/S1046-2023(03)00090-2
-
O'Neill, L. P., and Turner, B. M. (2003) Immunoprecipitation of native chromatin: NChIP. Methods 31, 76-82 (Pubitemid 36945173)
-
(2003)
Methods
, vol.31
, Issue.1
, pp. 76-82
-
-
O'Neill, L.P.1
Turner, B.M.2
-
32
-
-
33845925394
-
Chromatin immunoprecipitation and microarray-based analysis of protein location
-
Lee, T. I., Johnstone, S. E., and Young, R. A. (2006) Chromatin immunoprecipitation and microarray-based analysis of protein location. Nat. Protoc. 1, 729-748
-
(2006)
Nat. Protoc.
, vol.1
, pp. 729-748
-
-
Lee, T.I.1
Johnstone, S.E.2
Young, R.A.3
-
33
-
-
29244448703
-
Parts per million mass accuracy on an orbitrap mass spectrometer via lock mass injection into a C-trap
-
DOI 10.1074/mcp.T500030-MCP200
-
Olsen, J. V., de Godoy, L. M., Li, G., Macek, B., Mortensen, P., Pesch, R., Makarov, A., Lange, O., Horning, S., and Mann, M. (2005) Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap. Mol. Cell. Proteomics 4, 2010-2021 (Pubitemid 41830195)
-
(2005)
Molecular and Cellular Proteomics
, vol.4
, Issue.12
, pp. 2010-2021
-
-
Olsen, J.V.1
De Godoy, L.M.F.2
Li, G.3
Macek, B.4
Mortensen, P.5
Pesch, R.6
Makarov, A.7
Lange, O.8
Horning, S.9
Mann, M.10
-
34
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteomewide protein quantification
-
Deleted In Proof
-
Cox, J., and Mann, M. (2008) MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteomewide protein quantification. Nat. Biotechnol. 26, 1367-1372 Deleted In Proof
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
35
-
-
79953701087
-
Andromeda: A peptide search engine integrated into the MaxQuant environment
-
Cox, J., Neuhauser, N., Michalski, A., Scheltema, R. A., Olsen, J. V., and Mann, M. (2011) Andromeda: A peptide search engine integrated into the MaxQuant environment. J. Proteome Res. 10, 1794-1805
-
(2011)
J. Proteome Res.
, vol.10
, pp. 1794-1805
-
-
Cox, J.1
Neuhauser, N.2
Michalski, A.3
Scheltema, R.A.4
Olsen, J.V.5
Mann, M.6
-
36
-
-
80052674536
-
Software lock mass by two-dimensional minimization of peptide mass errors
-
Cox, J., Michalski, A., and Mann, M. (2011) Software lock mass by two-dimensional minimization of peptide mass errors. J. Am. Soc. Mass. Spectrom. 22, 1373-1380
-
(2011)
J. Am. Soc. Mass. Spectrom.
, vol.22
, pp. 1373-1380
-
-
Cox, J.1
Michalski, A.2
Mann, M.3
-
37
-
-
84859947744
-
The histone methyltransferase Wbp7 controls macrophage function through GPI glycolipid anchor synthesis
-
Austenaa, L., Barozzi, I., Chronowska, A., Termanini, A., Ostuni, R., Prosperini, E., Stewart, A. F., Testa, G., and Natoli, G. (2012) The histone methyltransferase Wbp7 controls macrophage function through GPI glycolipid anchor synthesis. Immunity 36, 572-585
-
(2012)
Immunity
, vol.36
, pp. 572-585
-
-
Austenaa, L.1
Barozzi, I.2
Chronowska, A.3
Termanini, A.4
Ostuni, R.5
Prosperini, E.6
Stewart, A.F.7
Testa, G.8
Natoli, G.9
-
38
-
-
84455200582
-
Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells
-
Ram, O., Goren, A., Amit, I., Shoresh, N., Yosef, N., Ernst, J., Kellis, M., Gymrek, M., Issner, R., Coyne, M., Durham, T., Zhang, X., Donaghey, J., Epstein, C. B., Regev, A., and Bernstein, B. E. (2011) Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells. Cell 147, 1628-1639
-
(2011)
Cell
, vol.147
, pp. 1628-1639
-
-
Ram, O.1
Goren, A.2
Amit, I.3
Shoresh, N.4
Yosef, N.5
Ernst, J.6
Kellis, M.7
Gymrek, M.8
Issner, R.9
Coyne, M.10
Durham, T.11
Zhang, X.12
Donaghey, J.13
Epstein, C.B.14
Regev, A.15
Bernstein, B.E.16
-
39
-
-
78650747491
-
Discovery and characterization of chromatin states for systematic annotation of the human genome
-
Ernst, J., and Kellis, M. (2010) Discovery and characterization of chromatin states for systematic annotation of the human genome. Nat. Biotechnol. 28, 817-825
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 817-825
-
-
Ernst, J.1
Kellis, M.2
-
40
-
-
34249779529
-
Pervasive combinatorial modification of histone H3 in human cells
-
DOI 10.1038/nmeth1052, PII NMETH1052
-
Garcia, B. A., Pesavento, J. J., Mizzen, C. A., and Kelleher, N. L. (2007) Pervasive combinatorial modification of histone H3 in human cells. Nat. Methods 4, 487-489 (Pubitemid 46852073)
-
(2007)
Nature Methods
, vol.4
, Issue.6
, pp. 487-489
-
-
Garcia, B.A.1
Pesavento, J.J.2
Mizzen, C.A.3
Kelleher, N.L.4
-
41
-
-
33847334699
-
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
-
DOI 10.1038/ng1966, PII NG1966
-
Heintzman, N. D., Stuart, R. K., Hon, G., Fu, Y., Ching, C. W., Hawkins, R. D., Barrera, L. O., Van Calcar, S., Qu, C., Ching, K. A., Wang, W., Weng, Z., Green, R. D., Crawford, G. E., and Ren, B. (2007) Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat. Genet. 39, 311-318 (Pubitemid 46328487)
-
(2007)
Nature Genetics
, vol.39
, Issue.3
, pp. 311-318
-
-
Heintzman, N.D.1
Stuart, R.K.2
Hon, G.3
Fu, Y.4
Ching, C.W.5
Hawkins, R.D.6
Barrera, L.O.7
Van Calcar, S.8
Qu, C.9
Ching, K.A.10
Wang, W.11
Weng, Z.12
Green, R.D.13
Crawford, G.E.14
Ren, B.15
-
42
-
-
70349952171
-
Role of the polycomb protein EED in the propagation of repressive histone marks
-
Margueron, R., Justin, N., Ohno, K., Sharpe, M. L., Son, J., Drury, W. J., 3rd, Voigt, P., Martin, S. R., Taylor, W. R., De Marco, V., Pirrotta, V., Reinberg, D., and Gamblin, S. J. (2009) Role of the polycomb protein EED in the propagation of repressive histone marks. Nature 461, 762-767
-
(2009)
Nature
, vol.461
, pp. 762-767
-
-
Margueron, R.1
Justin, N.2
Ohno, K.3
Sharpe, M.L.4
Son, J.5
Drury III, W.J.6
Voigt, P.7
Martin, S.R.8
Taylor, W.R.9
De Marco, V.10
Pirrotta, V.11
Reinberg, D.12
Gamblin, S.J.13
-
43
-
-
0041624288
-
Structural basis for specific binding of polycomb chromodomain to histone H3 methylated at Lys 27
-
DOI 10.1101/gad.269603
-
Min, J., Zhang, Y., and Xu, R. M. (2003) Structural basis for specific binding of Polycomb chromodomain to histone H3 methylated at Lys 27. Genes Dev. 17, 1823-1828 (Pubitemid 36944559)
-
(2003)
Genes and Development
, vol.17
, Issue.15
, pp. 1823-1828
-
-
Min, J.1
Zhang, Y.2
Xu, R.-M.3
-
44
-
-
77449086407
-
In vivo residue-specific histone methylation dynamics
-
Zee, B. M., Levin, R. S., Xu, B., LeRoy, G., Wingreen, N. S., and Garcia, B. A. (2010) In vivo residue-specific histone methylation dynamics. J. Biol. Chem. 285, 3341-3350
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 3341-3350
-
-
Zee, B.M.1
Levin, R.S.2
Xu, B.3
LeRoy, G.4
Wingreen, N.S.5
Garcia, B.A.6
-
45
-
-
0141929385
-
Binary switches and modification cassettes in histone biology and beyond
-
DOI 10.1038/nature02017
-
Fischle, W., Wang, Y., and Allis, C. D. (2003) Binary switches and modification cassettes in histone biology and beyond. Nature 425, 475-479 (Pubitemid 37237036)
-
(2003)
Nature
, vol.425
, Issue.6957
, pp. 475-479
-
-
Fischle, W.1
Wang, Y.2
Allis, C.D.3
-
46
-
-
9144268924
-
Partitioning and Plasticity of Repressive Histone Methylation States in Mammalian Chromatin
-
DOI 10.1016/S1097-2765(03)00477-5
-
Peters, A. H., Kubicek, S., Mechtler, K., O'Sullivan, R. J., Derijck, A. A., Perez-Burgos, L., Kohlmaier, A., Opravil, S., Tachibana, M., Shinkai, Y., Martens, J. H., and Jenuwein, T. (2003) Partitioning and plasticity of repressive histone methylation states in mammalian chromatin. Mol. Cell 12, 1577-1589 (Pubitemid 38037024)
-
(2003)
Molecular Cell
, vol.12
, Issue.6
, pp. 1577-1589
-
-
Peters, A.H.F.M.1
Kubicek, S.2
Mechtler, K.3
O'Sullivan, R.J.4
Derijck, A.A.H.A.5
Perez-Burgos, L.6
Kohlmaier, A.7
Opravil, S.8
Tachibana, M.9
Shinkai, Y.10
Martens, J.H.A.11
Jenuwein, T.12
-
47
-
-
0036289456
-
A mark in the core: Silence no more!
-
DOI 10.1016/S1097-2765(02)00554-3
-
Varga-Weisz, P. D., and Dalgaard, J. Z. (2002) A mark in the core: Silence no more! Mol. Cell 9, 1154-1156 (Pubitemid 34722293)
-
(2002)
Molecular Cell
, vol.9
, Issue.6
, pp. 1154-1156
-
-
Varga-Weisz, P.D.1
Dalgaard, J.Z.2
-
48
-
-
20444380510
-
Spatial distribution of di- and tri-methyl lysine 36 of histone H3 at active genes
-
DOI 10.1074/jbc.M500796200
-
Bannister, A. J., Schneider, R., Myers, F. A., Thorne, A. W., Crane-Robinson, C., and Kouzarides, T. (2005) Spatial distribution of di-and tri-methyl lysine 36 of histone H3 at active genes. J. Biol. Chem. 280, 17732-17736 (Pubitemid 41389011)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.18
, pp. 17732-17736
-
-
Bannister, A.J.1
Schneider, R.2
Myers, F.A.3
Thorne, A.W.4
Crane-Robinson, C.5
Kouzarides, T.6
-
49
-
-
65549095078
-
Histone H3 lysine 36 dimethylation (H3K36me2) is sufficient to recruit the Rpd3s histone deacetylase complex and to repress spurious transcription
-
Li, B., Jackson, J., Simon, M. D., Fleharty, B., Gogol, M., Seidel, C., Workman, J. L., and Shilatifard, A. (2009) Histone H3 lysine 36 dimethylation (H3K36me2) is sufficient to recruit the Rpd3s histone deacetylase complex and to repress spurious transcription. J. Biol. Chem. 284, 7970-7976
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 7970-7976
-
-
Li, B.1
Jackson, J.2
Simon, M.D.3
Fleharty, B.4
Gogol, M.5
Seidel, C.6
Workman, J.L.7
Shilatifard, A.8
-
50
-
-
9544245803
-
Heterochromatin structure and function
-
DOI 10.1016/j.biolcel.2004.06.003, PII S0248490004001509, Functional Architecture of the Cell Nucleus
-
Dillon, N. (2004) Heterochromatin structure and function. Biol. Cell 96, 631-637 (Pubitemid 39567278)
-
(2004)
Biology of the Cell
, vol.96
, Issue.8
, pp. 631-637
-
-
Dillon, N.1
-
51
-
-
2642542643
-
A silencing pathway to induce H3-K9 and H4-K20 trimethylation at constitutive heterochromatin
-
DOI 10.1101/gad.300704
-
Schotta, G., Lachner, M., Sarma, K., Ebert, A., Sengupta, R., Reuter, G., Reinberg, D., and Jenuwein, T. (2004) A silencing pathway to induce H3-K9 and H4-K20 trimethylation at constitutive heterochromatin. Genes Dev. 18, 1251-1262 (Pubitemid 38720593)
-
(2004)
Genes and Development
, vol.18
, Issue.11
, pp. 1251-1262
-
-
Schotta, G.1
Lachner, M.2
Sarma, K.3
Ebert, A.4
Sengupta, R.5
Reuter, G.6
Reinberg, D.7
Jenuwein, T.8
-
52
-
-
34147177521
-
Organismal differences in post-translational modifications in histones H3 and H4
-
DOI 10.1074/jbc.M607900200
-
Garcia, B. A., Hake, S. B., Diaz, R. L., Kauer, M., Morris, S. A., Recht, J., Shabanowitz, J., Mishra, N., Strahl, B. D., Allis, C. D., and Hunt, D. F. (2007) Organismal differences in post-translational modifications in histones H3 and H4. J. Biol. Chem. 282, 7641-7655 (Pubitemid 47093632)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.10
, pp. 7641-7655
-
-
Garcia, B.A.1
Hake, S.B.2
Diaz, R.L.3
Kauer, M.4
Morris, S.A.5
Recht, J.6
Shabanowitz, J.7
Mishra, N.8
Strahl, B.D.9
Allis, C.D.10
Hunt, D.F.11
-
53
-
-
0035282458
-
Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain
-
DOI 10.1038/35065138
-
Bannister, A. J., Zegerman, P., Partridge, J. F., Miska, E. A., Thomas, J. O., Allshire, R. C., and Kouzarides, T. (2001) Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain. Nature 410, 120-124 (Pubitemid 32225848)
-
(2001)
Nature
, vol.410
, Issue.6824
, pp. 120-124
-
-
Bannister, A.J.1
Zegerman, P.2
Partridge, J.F.3
Miska, E.A.4
Thomas, J.O.5
Allshire, R.C.6
Kouzarides, T.7
-
54
-
-
71749098783
-
Multimerization and H3K9me3 binding are required for CDYL1b heterochromatin association
-
Franz, H., Mosch, K., Soeroes, S., Urlaub, H., and Fischle, W. (2009) Multimerization and H3K9me3 binding are required for CDYL1b heterochromatin association. J. Biol. Chem. 284, 35049-35059
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 35049-35059
-
-
Franz, H.1
Mosch, K.2
Soeroes, S.3
Urlaub, H.4
Fischle, W.5
-
55
-
-
33745811234
-
The histone methyltransferase SETDB1 and the DNA methyltransferase DNMT3A interact directly and localize to promoters silenced in cancer cells
-
DOI 10.1074/jbc.M513249200
-
Li, H., Rauch, T., Chen, Z. X., Szabo, P. E., Riggs, A. D., and Pfeifer, G. P. (2006) The histone methyltransferase SETDB1 and the DNA methyltransferase DNMT3A interact directly and localize to promoters silenced in cancer cells. J. Biol. Chem. 281, 19489-19500 (Pubitemid 44035453)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.28
, pp. 19489-19500
-
-
Li, H.1
Rauch, T.2
Chen, Z.-X.3
Szabo, P.E.4
Riggs, A.D.5
Pfeifer, G.P.6
-
56
-
-
0037089626
-
SETDB1: A novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins
-
DOI 10.1101/gad.973302
-
Schultz, D. C., Ayyanathan, K., Negorev, D., Maul, G. G., and Rauscher, F. J., 3rd (2002) SETDB1: A novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins. Genes Dev. 16, 919-932 (Pubitemid 34408542)
-
(2002)
Genes and Development
, vol.16
, Issue.8
, pp. 919-932
-
-
Schultz, D.C.1
Ayyanathan, K.2
Negorev, D.3
Maul, G.G.4
Rauscher III, F.J.5
-
57
-
-
34249066239
-
Functional cooperation between HP1 and DNMT1 mediates gene silencing
-
DOI 10.1101/gad.1536807
-
Smallwood, A., Esteve, P. O., Pradhan, S., and Carey, M. (2007) Functional cooperation between HP1 and DNMT1 mediates gene silencing. Genes Dev. 21, 1169-1178 (Pubitemid 46789875)
-
(2007)
Genes and Development
, vol.21
, Issue.10
, pp. 1169-1178
-
-
Smallwood, A.1
Esteve, P.-O.2
Pradhan, S.3
Carey, M.4
-
58
-
-
77950655451
-
The multi-domain protein Np95 connects DNA methylation and histone modification
-
Rottach, A., Frauer, C., Pichler, G., Bonapace, I. M., Spada, F., and Leonhardt, H. (2010) The multi-domain protein Np95 connects DNA methylation and histone modification. Nucleic Acids Res. 38, 1796-1804
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 1796-1804
-
-
Rottach, A.1
Frauer, C.2
Pichler, G.3
Bonapace, I.M.4
Spada, F.5
Leonhardt, H.6
-
59
-
-
18844432121
-
The mammalian heterochromatin protein 1 binds diverse nuclear proteins through a common motif that targets the chromoshadow domain
-
DOI 10.1016/j.bbrc.2005.04.016, PII S0006291X0500776X
-
Lechner, M. S., Schultz, D. C., Negorev, D., Maul, G. G., and Rauscher, F. J., 3rd (2005) The mammalian heterochromatin protein 1 binds diverse nuclear proteins through a common motif that targets the chromoshadow domain. Biochem. Biophys. Res. Commun. 331, 929-937 (Pubitemid 40692450)
-
(2005)
Biochemical and Biophysical Research Communications
, vol.331
, Issue.4
, pp. 929-937
-
-
Lechner, M.S.1
Schultz, D.C.2
Negorev, D.3
Maul, G.G.4
Rauscher III, F.J.5
-
60
-
-
79251580715
-
HP1 recruits activity-dependent neuroprotective protein to H3K9me3 marked pericentromeric heterochromatin for silencing of major satellite repeats
-
Mosch, K., Franz, H., Soeroes, S., Singh, P. B., and Fischle, W. (2011) HP1 recruits activity-dependent neuroprotective protein to H3K9me3 marked pericentromeric heterochromatin for silencing of major satellite repeats. PLoS One 6, e15894
-
(2011)
PLoS One
, vol.6
-
-
Mosch, K.1
Franz, H.2
Soeroes, S.3
Singh, P.B.4
Fischle, W.5
-
61
-
-
56449126497
-
KDM2A represses transcription of centromeric satellite repeats and maintains the heterochromatic state
-
Frescas, D., Guardavaccaro, D., Kuchay, S. M., Kato, H., Poleshko, A., Basrur, V., Elenitoba-Johnson, K. S., Katz, R. A., and Pagano, M. (2008) KDM2A represses transcription of centromeric satellite repeats and maintains the heterochromatic state. Cell Cycle 7, 3539-3547
-
(2008)
Cell Cycle
, vol.7
, pp. 3539-3547
-
-
Frescas, D.1
Guardavaccaro, D.2
Kuchay, S.M.3
Kato, H.4
Poleshko, A.5
Basrur, V.6
Elenitoba-Johnson, K.S.7
Katz, R.A.8
Pagano, M.9
-
62
-
-
32844454603
-
Histone demethylation by a family of JmjC domain-containing proteins
-
DOI 10.1038/nature04433, PII NATURE04433
-
Tsukada, Y., Fang, J., Erdjument-Bromage, H., Warren, M. E., Borchers, C. H., Tempst, P., and Zhang, Y. (2006) Histone demethylation by a family of JmjC domain-containing proteins. Nature 439, 811-816 (Pubitemid 43255695)
-
(2006)
Nature
, vol.439
, Issue.7078
, pp. 811-816
-
-
Tsukada, Y.-I.1
Fang, J.2
Erdjument-Bromage, H.3
Warren, M.E.4
Borchers, C.H.5
Tempst, P.6
Zhang, Y.7
-
63
-
-
33746849256
-
Regulation of MLL1 H3K4 methyltransferase activity by its core components
-
DOI 10.1038/nsmb1128, PII NSMB1128
-
Dou, Y., Milne, T. A., Ruthenburg, A. J., Lee, S., Lee, J. W., Verdine, G. L., Allis, C. D., and Roeder, R. G. (2006) Regulation of MLL1 H3K4 methyltransferase activity by its core components. Nat. Struct. Mol. Biol. 13, 713-719 (Pubitemid 44175164)
-
(2006)
Nature Structural and Molecular Biology
, vol.13
, Issue.8
, pp. 713-719
-
-
Dou, Y.1
Milne, T.A.2
Ruthenburg, A.J.3
Lee, S.4
Lee, J.W.5
Verdine, G.L.6
Allis, C.D.7
Roeder, R.G.8
-
64
-
-
20444417108
-
WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development
-
DOI 10.1016/j.cell.2005.03.036, PII S0092867405003557
-
Wysocka, J., Swigut, T., Milne, T. A., Dou, Y., Zhang, X., Burlingame, A. L., Roeder, R. G., Brivanlou, A. H., and Allis, C. D. (2005) WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development. Cell 121, 859-872 (Pubitemid 40806418)
-
(2005)
Cell
, vol.121
, Issue.6
, pp. 859-872
-
-
Wysocka, J.1
Swigut, T.2
Milne, T.A.3
Dou, Y.4
Zhang, X.5
Burlingame, A.L.6
Roeder, R.G.7
Brivanlou, A.H.8
Allis, C.D.9
-
65
-
-
33745809637
-
Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF
-
DOI 10.1038/nature04802, PII NATURE04802
-
Li, H., Ilin, S., Wang, W., Duncan, E. M., Wysocka, J., Allis, C. D., and Patel, D. J. (2006) Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature 442, 91-95 (Pubitemid 44064215)
-
(2006)
Nature
, vol.442
, Issue.7098
, pp. 91-95
-
-
Li, H.1
Ilin, S.2
Wang, W.3
Duncan, E.M.4
Wysocka, J.5
Allis, C.D.6
Patel, D.J.7
-
66
-
-
0036787862
-
RNA polymerase II elongation factors of Saccharomyces cerevisiae: A targeted proteomics approach
-
Krogan, N. J., Kim, M., Ahn, S. H., Zhong, G., Kobor, M. S., Cagney, G., Emili, A., Shilatifard, A., Buratowski, S., and Greenblatt, J. F. (2002) RNA polymerase II elongation factors of Saccharomyces cerevisiae: A targeted proteomics approach. Mol. Cell. Biol. 22, 6979-6992
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 6979-6992
-
-
Krogan, N.J.1
Kim, M.2
Ahn, S.H.3
Zhong, G.4
Kobor, M.S.5
Cagney, G.6
Emili, A.7
Shilatifard, A.8
Buratowski, S.9
Greenblatt, J.F.10
-
67
-
-
77949909978
-
The middle region of an HP1-binding protein, HP1-BP74, associates with linker DNA at the entry/exit site of nucleosomal DNA
-
Hayashihara, K., Uchiyama, S., Shimamoto, S., Kobayashi, S., Tomschik, M., Wakamatsu, H., No, D., Sugahara, H., Hori, N., Noda, M., Ohkubo, T., Zlatanova, J., Matsunaga, S., and Fukui, K. (2010) The middle region of an HP1-binding protein, HP1-BP74, associates with linker DNA at the entry/exit site of nucleosomal DNA. J. Biol. Chem. 285, 6498-6507
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 6498-6507
-
-
Hayashihara, K.1
Uchiyama, S.2
Shimamoto, S.3
Kobayashi, S.4
Tomschik, M.5
Wakamatsu, H.6
No, D.7
Sugahara, H.8
Hori, N.9
Noda, M.10
Ohkubo, T.11
Zlatanova, J.12
Matsunaga, S.13
Fukui, K.14
-
68
-
-
0038820088
-
SAFB2, a new scaffold attachment factor homolog and estrogen receptor corepressor
-
DOI 10.1074/jbc.M212988200
-
Townson, S. M., Dobrzycka, K. M., Lee, A. V., Air, M., Deng, W., Kang, K., Jiang, S., Kioka, N., Michaelis, K., and Oesterreich, S. (2003) SAFB2, a new scaffold attachment factor homolog and estrogen receptor corepressor. J. Biol. Chem. 278, 20059-20068 (Pubitemid 36799199)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.22
, pp. 20059-20068
-
-
Townson, S.M.1
Dobrzycka, K.M.2
Lee, A.V.3
Air, M.4
Deng, W.5
Kang, K.6
Jiang, S.7
Kioka, N.8
Michaelis, K.9
Oesterreich, S.10
-
69
-
-
35748967921
-
A novel member of the SAF (scaffold attachment factor)-box protein family inhibits gene expression and induces apoptosis
-
DOI 10.1042/BJ20070170
-
Chan, C. W., Lee, Y. B., Uney, J., Flynn, A., Tobias, J. H., and Norman, M. (2007) A novel member of the SAF (scaffold attachment factor)-box protein family inhibits gene expression and induces apoptosis. Biochem. J. 407, 355-362 (Pubitemid 350058469)
-
(2007)
Biochemical Journal
, vol.407
, Issue.3
, pp. 355-362
-
-
Chan, C.W.1
Lee, Y.-B.2
Uney, J.3
Flynn, A.4
Tobias, J.H.5
Norman, M.6
-
70
-
-
54849442463
-
Identifying functional neighborhoods within the cell nucleus: Proximity analysis of early Sphase replicating chromatin domains to sites of transcription, RNA polymerase II, HP1gamma, matrin 3 and SAF-A
-
Malyavantham, K. S., Bhattacharya, S., Barbeitos, M., Mukherjee, L., Xu, J., Fackelmayer, F. O., and Berezney, R. (2008) Identifying functional neighborhoods within the cell nucleus: Proximity analysis of early Sphase replicating chromatin domains to sites of transcription, RNA polymerase II, HP1gamma, matrin 3 and SAF-A. J. Cell. Biochem. 105, 391-403
-
(2008)
J. Cell. Biochem.
, vol.105
, pp. 391-403
-
-
Malyavantham, K.S.1
Bhattacharya, S.2
Barbeitos, M.3
Mukherjee, L.4
Xu, J.5
Fackelmayer, F.O.6
Berezney, R.7
-
71
-
-
0034835402
-
Specificity of SAF-A and lamin B binding in vitro correlates with the satellite DNA bending state
-
DOI 10.1002/jcb.1220
-
Lobov, I. B., Tsutsui, K., Mitchell, A. R., and Podgornaya, O. I. (2001) Specificity of SAF-A and lamin B binding in vitro correlates with the satellite DNA bending state. J. Cell. Biochem. 83, 218-229 (Pubitemid 32896592)
-
(2001)
Journal of Cellular Biochemistry
, vol.83
, Issue.2
, pp. 218-229
-
-
Lobov, I.B.1
Tsutsui, K.2
Mitchell, A.R.3
Podgornaya, O.I.4
-
72
-
-
0032498273
-
FACT, a factor that facilitates transcript elongation through nucleosomes
-
DOI 10.1016/S0092-8674(00)80903-4
-
Orphanides, G., LeRoy, G., Chang, C. H., Luse, D. S., and Reinberg, D. (1998) FACT, a factor that facilitates transcript elongation through nucleosomes. Cell 92, 105-116 (Pubitemid 28053302)
-
(1998)
Cell
, vol.92
, Issue.1
, pp. 105-116
-
-
Orphanides, G.1
LeRoy, G.2
Chang, C.-H.3
Luse, D.S.4
Reinberg, D.5
-
73
-
-
0041828954
-
FACT facilitates transcription-dependent nucleosome alteration
-
DOI 10.1126/science.1085703
-
Belotserkovskaya, R., Oh, S., Bondarenko, V. A., Orphanides, G., Studitsky, V. M., and Reinberg, D. (2003) FACT facilitates transcription- dependent nucleosome alteration. Science 301, 1090-1093 (Pubitemid 37022309)
-
(2003)
Science
, vol.301
, Issue.5636
, pp. 1090-1093
-
-
Belotserkovskaya, R.1
Oh, S.2
Bondarenko, V.A.3
Orphanides, G.4
Studitsky, V.M.5
Reinberg, D.6
-
74
-
-
0042830962
-
Tracking FACT and the RNA polymerase II elongation complex through chromatin in vivo
-
DOI 10.1126/science.1085712
-
Saunders, A., Werner, J., Andrulis, E. D., Nakayama, T., Hirose, S., Reinberg, D., and Lis, J. T. (2003) Tracking FACT and the RNA polymerase II elongation complex through chromatin in vivo. Science 301, 1094-1096 (Pubitemid 37022310)
-
(2003)
Science
, vol.301
, Issue.5636
, pp. 1094-1096
-
-
Saunders, A.1
Werner, J.2
Andrulis, E.D.3
Nakayama, T.4
Hirose, S.5
Reinberg, D.6
Lis, J.T.7
-
75
-
-
10344240948
-
The chromatin remodelling complex FACT associates with actively transcribed regions of the Arabidopsis genome
-
DOI 10.1111/j.1365-313X.2004.02242.x
-
Duroux, M., Houben, A., Ruzicka, K., Friml, J., and Grasser, K. D. (2004) The chromatin remodelling complex FACT associates with actively transcribed regions of the Arabidopsis genome. Plant J. 40, 660-671 (Pubitemid 39623241)
-
(2004)
Plant Journal
, vol.40
, Issue.5
, pp. 660-671
-
-
Duroux, M.1
Houben, A.2
Ruzicka, K.3
Friml, J.4
Grasser, K.D.5
-
76
-
-
0033082238
-
Reconstitution of a core chromatin remodeling complex from SWI/SNF subunits
-
DOI 10.1016/S1097-2765(00)80315-9
-
Phelan, M. L., Sif, S., Narlikar, G. J., and Kingston, R. E. (1999) Reconstitution of a core chromatin remodeling complex from SWI/SNF subunits. Mol. Cell 3, 247-253 (Pubitemid 29292625)
-
(1999)
Molecular Cell
, vol.3
, Issue.2
, pp. 247-253
-
-
Phelan, M.L.1
Sif, S.2
Narlikar, G.J.3
Kingston, R.E.4
-
77
-
-
79955023093
-
HMGB factors are required for posterior digit development through integrating signaling pathway activities
-
Itou, J., Taniguchi, N., Oishi, I., Kawakami, H., Lotz, M., and Kawakami, Y. (2011) HMGB factors are required for posterior digit development through integrating signaling pathway activities. Dev. Dyn. 240, 1151-1162
-
(2011)
Dev. Dyn.
, vol.240
, pp. 1151-1162
-
-
Itou, J.1
Taniguchi, N.2
Oishi, I.3
Kawakami, H.4
Lotz, M.5
Kawakami, Y.6
-
78
-
-
78651084043
-
The cohesin-interacting protein, precocious dissociation of sisters 5A/sister chromatid cohesion protein 112, is up-regulated in human astrocytic tumors
-
Hagemann, C., Weigelin, B., Schommer, S., Schulze, M., Al-Jomah, N., Anacker, J., Gerngras, S., Kuhnel, S., Kessler, A. F., Polat, B., Ernestus, R. I., Patel, R., and Vince, G. H. (2011) The cohesin-interacting protein, precocious dissociation of sisters 5A/sister chromatid cohesion protein 112, is up-regulated in human astrocytic tumors. Int. J. Mol. Med. 27, 39-51
-
(2011)
Int. J. Mol. Med.
, vol.27
, pp. 39-51
-
-
Hagemann, C.1
Weigelin, B.2
Schommer, S.3
Schulze, M.4
Al-Jomah, N.5
Anacker, J.6
Gerngras, S.7
Kuhnel, S.8
Kessler, A.F.9
Polat, B.10
Ernestus, R.I.11
Patel, R.12
Vince, G.H.13
-
79
-
-
1542395654
-
SCC-112, a novel cell cycle-regulated molecule, exhibits reduced expression in human renal carcinomas
-
DOI 10.1016/j.gene.2003.12.013, PII S037811190301148X
-
Kumar, D., Sakabe, I., Patel, S., Zhang, Y., Ahmad, I., Gehan, E. A., Whiteside, T. L., and Kasid, U. (2004) SCC-112, a novel cell cycleregulated molecule, exhibits reduced expression in human renal carcinomas. Gene 328, 187-196 (Pubitemid 38352895)
-
(2004)
Gene
, vol.328
, Issue.1-2
, pp. 187-196
-
-
Kumar, D.1
Sakabe, I.2
Patel, S.3
Zhang, Y.4
Ahmad, I.5
Gehan, E.A.6
Whiteside, T.L.7
Kasid, U.8
-
80
-
-
40049090180
-
SCC-112 gene is involved in tumor progression and promotes the cell proliferation in G2/M phase
-
DOI 10.1007/s00432-007-0306-x
-
Zheng, M. Z., Zheng, L. M., and Zeng, Y. X. (2008) SCC-112 gene is involved in tumor progression and promotes the cell proliferation in G2/M phase. J. Cancer Res. Clin. Oncol. 134, 453-462 (Pubitemid 351322381)
-
(2008)
Journal of Cancer Research and Clinical Oncology
, vol.134
, Issue.4
, pp. 453-462
-
-
Zheng, M.Z.1
Zheng, L.M.2
Zeng, Y.X.3
-
81
-
-
58149460416
-
Weak but uniform enrichment of the histone variant macroH2A1 along the inactive X chromosome
-
Mietton, F., Sengupta, A. K., Molla, A., Picchi, G., Barral, S., Heliot, L., Grange, T., Wutz, A., and Dimitrov, S. (2009) Weak but uniform enrichment of the histone variant macroH2A1 along the inactive X chromosome. Mol. Cell. Biol. 29, 150-156
-
(2009)
Mol. Cell. Biol.
, vol.29
, pp. 150-156
-
-
Mietton, F.1
Sengupta, A.K.2
Molla, A.3
Picchi, G.4
Barral, S.5
Heliot, L.6
Grange, T.7
Wutz, A.8
Dimitrov, S.9
-
82
-
-
0041669491
-
Inactivating chromosomes: A macro domain that minimizes transcription
-
Ladurner, A. G. (2003) Inactivating chromosomes: A macro domain that minimizes transcription. Mol. Cell 12, 1-3
-
(2003)
Mol. Cell
, vol.12
, pp. 1-3
-
-
Ladurner, A.G.1
-
83
-
-
17644369665
-
Variant histone H3.3 marks promoters of transcriptionally active genes during mammalian cell division
-
DOI 10.1038/sj.embor.7400366
-
Chow, C. M., Georgiou, A., Szutorisz, H., Maia e Silva, A., Pombo, A., Barahona, I., Dargelos, E., Canzonetta, C., and Dillon, N. (2005) Variant histone H3.3 marks promoters of transcriptionally active genes during mammalian cell division. EMBO Rep. 6, 354-360 (Pubitemid 40561628)
-
(2005)
EMBO Reports
, vol.6
, Issue.4
, pp. 354-360
-
-
Chow, C.-M.1
Georgiou, A.2
Szutorisz, H.3
Maia E Silva, A.4
Pombo, A.5
Barahona, I.6
Dargelos, E.7
Canzonetta, C.8
Dillon, N.9
-
84
-
-
1242342240
-
Histone H3.3 is enriched in covalent modifications associated with active chromatin
-
DOI 10.1073/pnas.0308092100
-
McKittrick, E., Gafken, P. R., Ahmad, K., and Henikoff, S. (2004) Histone H3.3 is enriched in covalent modifications associated with active chromatin. Proc. Natl. Acad. Sci. U.S.A. 101, 1525-1530 (Pubitemid 38234188)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.6
, pp. 1525-1530
-
-
McKittrick, E.1
Gafken, P.R.2
Ahmad, K.3
Henikoff, S.4
-
85
-
-
33644853355
-
Expression patterns and post-translational modifications associated with mammalian histone H3 variants
-
DOI 10.1074/jbc.M509266200
-
Hake, S. B., Garcia, B. A., Duncan, E. M., Kauer, M., Dellaire, G., Shabanowitz, J., Bazett-Jones, D. P., Allis, C. D., and Hunt, D. F. (2006) Expression patterns and post-translational modifications associated with mammalian histone H3 variants. J. Biol. Chem. 281, 559-568 (Pubitemid 43671219)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.1
, pp. 559-568
-
-
Hake, S.B.1
Garcia, B.A.2
Duncan, E.M.3
Kauer, M.4
Dellaire, G.5
Shabanowitz, J.6
Bazett-Jones, D.P.7
Allis, C.D.8
Hunt, D.F.9
-
86
-
-
33749657892
-
PTMs on H3 Variants before Chromatin Assembly Potentiate Their Final Epigenetic State
-
DOI 10.1016/j.molcel.2006.08.019, PII S1097276506006009
-
Loyola, A., Bonaldi, T., Roche, D., Imhof, A., and Almouzni, G. (2006) PTMs on H3 variants before chromatin assembly potentiate their final epigenetic state. Mol. Cell 24, 309-316 (Pubitemid 44557123)
-
(2006)
Molecular Cell
, vol.24
, Issue.2
, pp. 309-316
-
-
Loyola, A.1
Bonaldi, T.2
Roche, D.3
Imhof, A.4
Almouzni, G.5
-
87
-
-
71349083638
-
Histone H1 binding is inhibited by histone variant H3.3
-
Braunschweig, U., Hogan, G. J., Pagie, L., and van Steensel, B. (2009) Histone H1 binding is inhibited by histone variant H3.3. EMBO J. 28, 3635-3645
-
(2009)
EMBO J.
, vol.28
, pp. 3635-3645
-
-
Braunschweig, U.1
Hogan, G.J.2
Pagie, L.3
Van Steensel, B.4
-
88
-
-
84860778746
-
Linker histone subtypes differ in their effect on nucleosomal spacing in vivo
-
Oberg, C., Izzo, A., Schneider, R., Wrange, O., and Belikov, S. (2011) Linker histone subtypes differ in their effect on nucleosomal spacing in vivo. J. Mol. Biol. 419, 183-197
-
(2011)
J. Mol. Biol.
, vol.419
, pp. 183-197
-
-
Oberg, C.1
Izzo, A.2
Schneider, R.3
Wrange, O.4
Belikov, S.5
-
89
-
-
0033850576
-
The distribution of somatic H1 subtypes is non-random on active vs. inactive chromatin: Distribution in human fetal fibroblasts
-
Parseghian, M. H., Newcomb, R. L., Winokur, S. T., and Hamkalo, B. A. (2000) The distribution of somatic H1 subtypes is non-random on active vs. inactive chromatin: Distribution in human fetal fibroblasts. Chromosome Res. 8, 405-424
-
(2000)
Chromosome Res.
, vol.8
, pp. 405-424
-
-
Parseghian, M.H.1
Newcomb, R.L.2
Winokur, S.T.3
Hamkalo, B.A.4
-
90
-
-
0032489520
-
DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139
-
DOI 10.1074/jbc.273.10.5858
-
Rogakou, E. P., Pilch, D. R., Orr, A. H., Ivanova, V. S., and Bonner, W. M. (1998) DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139. J. Biol. Chem. 273, 5858-5868 (Pubitemid 28124064)
-
(1998)
Journal of Biological Chemistry
, vol.273
, Issue.10
, pp. 5858-5868
-
-
Rogakou, E.P.1
Pilch, D.R.2
Orr, A.H.3
Ivanova, V.S.4
Bonner, W.M.5
-
91
-
-
3242880238
-
H2AX: The histone guardian of the genome
-
DOI 10.1016/j.dnarep.2004.03.024, PII S1568786404000837
-
Fernandez-Capetillo, O., Lee, A., Nussenzweig, M., and Nussenzweig, A. (2004) H2AX: The histone guardian of the genome. DNA Repair (Amst.) 3, 959-967 (Pubitemid 38997938)
-
(2004)
DNA Repair
, vol.3
, Issue.8-9
, pp. 959-967
-
-
Fernandez-Capetillo, O.1
Lee, A.2
Nussenzweig, M.3
Nussenzweig, A.4
-
92
-
-
33745737494
-
Myc-bindingsite recognition in the human genome is determined by chromatin context
-
Guccione, E., Martinato, F., Finocchiaro, G., Luzi, L., Tizzoni, L., Dall'Olio, V., Zardo, G., Nervi, C., Bernard, L., and Amati, B. (2006) Myc-bindingsite recognition in the human genome is determined by chromatin context. Nat. Cell Biol. 8, 764-770
-
(2006)
Nat. Cell Biol.
, vol.8
, pp. 764-770
-
-
Guccione, E.1
Martinato, F.2
Finocchiaro, G.3
Luzi, L.4
Tizzoni, L.5
Dall'Olio, V.6
Zardo, G.7
Nervi, C.8
Bernard, L.9
Amati, B.10
-
93
-
-
1542358189
-
Multiple roles for ISWI in transcription, chromosome organization and DNA replication
-
DOI 10.1016/j.bbaexp.2003.09.018, PII S0167478103002835
-
Corona, D. F., and Tamkun, J. W. (2004) Multiple roles for ISWI in transcription, chromosome organization and DNA replication. Biochim. Biophys. Acta 1677, 113-119 (Pubitemid 38327095)
-
(2004)
Biochimica et Biophysica Acta - Gene Structure and Expression
, vol.1677
, Issue.1-3
, pp. 113-119
-
-
Corona, D.F.V.1
Tamkun, J.W.2
-
94
-
-
0036565656
-
WSTF-ISWI chromatin remodeling complex targets heterochromatic replication foci
-
DOI 10.1093/emboj/21.9.2231
-
Bozhenok, L., Wade, P. A., and Varga-Weisz, P. (2002) WSTF-ISWI chromatin remodeling complex targets heterochromatic replication foci. EMBO J. 21, 2231-2241 (Pubitemid 34516782)
-
(2002)
EMBO Journal
, vol.21
, Issue.9
, pp. 2231-2241
-
-
Bozhenok, L.1
Wade, P.A.2
Varga-Weisz, P.3
-
95
-
-
71049122240
-
High throughput characterization of combinatorial histone codes
-
Young, N. L., DiMaggio, P. A., Plazas-Mayorca, M. D., Baliban, R. C., Floudas, C. A., and Garcia, B. A. (2009) High throughput characterization of combinatorial histone codes. Mol. Cell. Proteomics 8, 2266-2284
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 2266-2284
-
-
Young, N.L.1
DiMaggio, P.A.2
Plazas-Mayorca, M.D.3
Baliban, R.C.4
Floudas, C.A.5
Garcia, B.A.6
-
96
-
-
32344452605
-
Precise characterization of human histones in the H2A gene family by top down mass spectrometry
-
DOI 10.1021/pr050269n
-
Boyne, M. T., 2nd, Pesavento, J. J., Mizzen, C. A., and Kelleher, N. L. (2006) Precise characterization of human histones in the H2A gene family by top down mass spectrometry. J. Proteome Res. 5, 248-253 (Pubitemid 43222292)
-
(2006)
Journal of Proteome Research
, vol.5
, Issue.2
, pp. 248-253
-
-
Boyne II, M.T.1
Pesavento, J.J.2
Mizzen, C.A.3
Kelleher, N.L.4
-
97
-
-
42949095911
-
BAC TransgeneOmics: A high-throughput method for exploration of protein function in mammals
-
DOI 10.1038/nmeth.1199, PII NMETH.1199
-
Poser, I., Sarov, M., Hutchins, J. R., Heriche, J. K., Toyoda, Y., Pozniakovsky, A., Weigl, D., Nitzsche, A., Hegemann, B., Bird, A. W., Pelletier, L., Kittler, R., Hua, S., Naumann, R., Augsburg, M., Sykora, M. M., Hofemeister, H., Zhang, Y., Nasmyth, K., White, K. P., Dietzel, S., Mechtler, K., Durbin, R., Stewart, A. F., Peters, J. M., Buchholz, F., and Hyman, A. A. (2008) BAC TransgeneOmics: A high-throughput method for exploration of protein function in mammals. Nat. Methods 5, 409-415 (Pubitemid 351619099)
-
(2008)
Nature Methods
, vol.5
, Issue.5
, pp. 409-415
-
-
Poser, I.1
Sarov, M.2
Hutchins, J.R.A.3
Heriche, J.-K.4
Toyoda, Y.5
Pozniakovsky, A.6
Weigl, D.7
Nitzsche, A.8
Hegemann, B.9
Bird, A.W.10
Pelletier, L.11
Kittler, R.12
Hua, S.13
Naumann, R.14
Augsburg, M.15
Sykora, M.M.16
Hofemeister, H.17
Zhang, Y.18
Nasmyth, K.19
White, K.P.20
Dietzel, S.21
Mechtler, K.22
Durbin, R.23
Stewart, A.F.24
Peters, J.-M.25
Buchholz, F.26
Hyman, A.A.27
more..
-
98
-
-
58149242430
-
WSTF regulates the H2A.X DNA damage response via a novel tyrosine kinase activity
-
Xiao, A., Li, H., Shechter, D., Ahn, S. H., Fabrizio, L. A., Erdjument-Bromage, H., Ishibe-Murakami, S., Wang, B., Tempst, P., Hofmann, K., Patel, D. J., Elledge, S. J., and Allis, C. D. (2009) WSTF regulates the H2A.X DNA damage response via a novel tyrosine kinase activity. Nature 457, 57-62
-
(2009)
Nature
, vol.457
, pp. 57-62
-
-
Xiao, A.1
Li, H.2
Shechter, D.3
Ahn, S.H.4
Fabrizio, L.A.5
Erdjument-Bromage, H.6
Ishibe-Murakami, S.7
Wang, B.8
Tempst, P.9
Hofmann, K.10
Patel, D.J.11
Elledge, S.J.12
Allis, C.D.13
-
99
-
-
34447532525
-
Heterochromatin is refractory to γ-H2AX modification in yeast and mammals
-
DOI 10.1083/jcb.200612031
-
Kim, J. A., Kruhlak, M., Dotiwala, F., Nussenzweig, A., and Haber, J. E. (2007) Heterochromatin is refractory to gamma-H2AX modification in yeast and mammals. J. Cell Biol. 178, 209-218 (Pubitemid 47076458)
-
(2007)
Journal of Cell Biology
, vol.178
, Issue.2
, pp. 209-218
-
-
Kim, J.-A.1
Kruhlak, M.2
Dotiwala, F.3
Nussenzweig, A.4
Haber, J.E.5
-
100
-
-
42249102663
-
GammaH2AX foci form preferentially in euchromatin after ionising-radiation
-
Cowell, I. G., Sunter, N. J., Singh, P. B., Austin, C. A., Durkacz, B. W., and Tilby, M. J. (2007) gammaH2AX foci form preferentially in euchromatin after ionising-radiation. PLoS One 2, e1057
-
(2007)
PLoS One
, vol.2
-
-
Cowell, I.G.1
Sunter, N.J.2
Singh, P.B.3
Austin, C.A.4
Durkacz, B.W.5
Tilby, M.J.6
-
101
-
-
73849107441
-
Gammaradiation-induced gammaH2AX formation occurs preferentially in actively transcribing euchromatic loci
-
Vasireddy, R. S., Karagiannis, T. C., and El-Osta, A. (2010) Gammaradiation-induced gammaH2AX formation occurs preferentially in actively transcribing euchromatic loci. Cell. Mol. Life Sci. 67, 291-294
-
(2010)
Cell. Mol. Life Sci.
, vol.67
, pp. 291-294
-
-
Vasireddy, R.S.1
Karagiannis, T.C.2
El-Osta, A.3
-
102
-
-
78649449767
-
The influence of heterochromatin on DNA double strand break repair: Getting the strong, silent type to relax
-
Goodarzi, A. A., Jeggo, P., and Lobrich, M. (2010) The influence of heterochromatin on DNA double strand break repair: Getting the strong, silent type to relax. DNA Repair (Amst.) 9, 1273-1282
-
(2010)
DNA Repair (Amst.
, vol.9
, pp. 1273-1282
-
-
Goodarzi, A.A.1
Jeggo, P.2
Lobrich, M.3
-
103
-
-
17944380227
-
Loss of the Suv39h histone methyltransferases impairs mammalian heterochromatin and genome stability
-
DOI 10.1016/S0092-8674(01)00542-6
-
Peters, A. H., O'Carroll, D., Scherthan, H., Mechtler, K., Sauer, S., Schofer, C., Weipoltshammer, K., Pagani, M., Lachner, M., Kohlmaier, A., Opravil, S., Doyle, M., Sibilia, M., and Jenuwein, T. (2001) Loss of the Suv39h histone methyltransferases impairs mammalian heterochromatin and genome stability. Cell 107, 323-337 (Pubitemid 33049976)
-
(2001)
Cell
, vol.107
, Issue.3
, pp. 323-337
-
-
Peters, A.H.F.M.1
O'Carroll, D.2
Scherthan, H.3
Mechtler, K.4
Sauer, S.5
Schofer, C.6
Weipoltshammer, K.7
Pagani, M.8
Lachner, M.9
Kohlmaier, A.10
Opravil, S.11
Doyle, M.12
Sibilia, M.13
Jenuwein, T.14
-
104
-
-
44449136965
-
HP1-β mobilization promotes chromatin changes that initiate the DNA damage response
-
DOI 10.1038/nature06875, PII NATURE06875
-
Ayoub, N., Jeyasekharan, A. D., Bernal, J. A., and Venkitaraman, A. R. (2008) HP1-beta mobilization promotes chromatin changes that initiate the DNA damage response. Nature 453, 682-686 (Pubitemid 351769293)
-
(2008)
Nature
, vol.453
, Issue.7195
, pp. 682-686
-
-
Ayoub, N.1
Jeyasekharan, A.D.2
Bernal, J.A.3
Venkitaraman, A.R.4
-
105
-
-
63449109369
-
Heterochromatic genome stability requires regulators of histone H3 K9 methylation
-
Peng, J. C., and Karpen, G. H. (2009) Heterochromatic genome stability requires regulators of histone H3 K9 methylation. PLoS Genet. 5, e1000435
-
(2009)
PLoS Genet
, vol.5
-
-
Peng, J.C.1
Karpen, G.H.2
-
106
-
-
84865975058
-
Dual recognition of phosphoserine and phosphotyrosine in histone variant H2A.X by DNA damage response protein MCPH1
-
Singh, N., Basnet, H., Wiltshire, T. D., Mohammad, D. H., Thompson, J. R., Heroux, A., Botuyan, M. V., Yaffe, M. B., Couch, F. J., Rosenfeld, M. G., and Mer, G. Dual recognition of phosphoserine and phosphotyrosine in histone variant H2A.X by DNA damage response protein MCPH1. Proc. Natl. Acad. Sci. U.S.A. 109, 14381-14386
-
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 14381-14386
-
-
Singh, N.1
Basnet, H.2
Wiltshire, T.D.3
Mohammad, D.H.4
Thompson, J.R.5
Heroux, A.6
Botuyan, M.V.7
Yaffe, M.B.8
Couch, F.J.9
Rosenfeld, M.G.10
Mer, G.11
|