FACT, a factor that facilitates transcript elongation through nucleosomes

Cell

Volumn 92, Issue 1, 1998, Pages 105-116

  Orphanides, George ^a   LeRoy, Gary ^a   Chang, Chun Hsiang ^b   Luse, Donal S ^b   Reinberg, Danny ^a  

^a HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^b LERNER RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RNA POLYMERASE II; TRANSCRIPTION FACTOR;

ARTICLE; CHROMATIN; GENETIC TRANSCRIPTION; HELA CELL; HUMAN; HUMAN CELL; NUCLEOSOME; PRIORITY JOURNAL; PROMOTER REGION; TRANSCRIPTION INITIATION; TRANSCRIPTION REGULATION;

EID: 0032498273     PISSN: 00928674     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0092-8674(00)80903-4     Document Type: Article

References (47)

1. Aso, T., Conaway, J.W., and Conaway, R.C. (1995). The RNA polymerase II elongation complex. FASEB J. 9, 1419-1428.
2. Brown, S.A., Imbalzano, A.N., and Kingston, R.E. (1996). Activator-dependent regulation of transcriptional pausing on nucleosomal templates. Genes Dev. 10, 1479-1490.
3. Bulger, M., and Kadonaga, J.T. (1994). Biochemical reconstitution of chromatin with physiological nucleosome spacing. Methods Mol. Genet. 5, 241-262.
4. Cairns, B.R., Kim, Y.-J., Sayes, M.H., Laurent, B.C., and Kornberg, R.D. (1994). A multi-subunit complex containing the SWI1/ADR6, SWI2/SNF2, SWI3, SNF5, SNF6 gene products isolated from yeast. Proc. Natl. Acad. Sci. USA 91, 1950-1954.
5. Cairns, B.R., Lorch, Y., Li, Y., Zhang, M., Lacomis, L., Erdjument-Bromage, H., Tempst, P., Du, J., Laurent, B., and Kornberg, R.D. (1996). RSC, an essential, abundant chromatin-remodeling complex. Cell 87, 1249-1260.
6. Chang, C.-H., and Luse, D.S. (1997). The H3/H4 tetramer blocks transcript elongation by RNA polymerase II in vitro. J. Biol. Chem. 272, 23427-23434.
7. Cote, J., Quinn, J., Workman, J.L., and Peterson, C.L. (1994). Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex. Science 265, 53-60.
8. Croston, G.E., Laybourn, P.J., Paranjape, S.M., and Kadonaga, J.T. (1992). Mechanism of transcriptional antirepression by GAL4-VP16. Genes Dev. 6, 2270-2281.
9. Dignam, J.D., Lebovitz, R.M., and Roeder, R.G. (1983). Accurate transcription by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res. 11, 1475-1489.
10. Ding, H.-F., Rimsky, S., Batson, S.C., Bustin, M., and Hansen, U. (1994). Stimulation of RNA polymerase II elongation by chromosomal protein HMG-14. Science 265, 796-799.
11. Flores, O., Lu, H., and Reinberg, D. (1992). Factors involved in specific transcription by mammalian RNA polymerase II: identification and characterization of factor IIH. J. Biol. Chem. 267, 2786-2793.
12. Ge, H., and Roeder, R.G. (1994). Purification, cloning, and characterization of a human coactivator, PC4, that mediates transcriptional activation of class II genes. Cell 78, 513-523.
13. Gralla, J.D. (1985). Rapid "footprinting" on supercoiled DNA. Proc. Natl. Acad. Sci. USA 82, 3078-3081.
14. Gross, D.S., and Garrard, W.T. (1988). Nuclease hypersensitive sites in chromatin. Annu. Rev. Biochem. 57, 159-157.
15. Guarente, L. (1995). Transcriptional coactivators in yeast and beyond. Trends Biochem. Sci. 20, 517-521.
16. Ito, T., Bulger, M., Pazin, M.J., Kobayashi, R., and Kadonaga, J.T. (1997). ACF, an IWSI-containing and ATP-utilizing chromatin assembly and remodeling factor. Cell 90, 145-155.
17. Izban, M.G., and Luse, D.S. (1991). Transcription on nucleosomal templates by RNA polymerase II in vitro: inhibition of elongation with enhancement of sequence-specific pausing. Genes Dev. 5, 683-696.
18. Kamakaka, R.T., Bulger, M., and Kadonaga, J.T. (1993). Potentiation of RNA polymerase II transcription by Gal4-VP16 during but not after DNA replication and chromatin assembly. Genes Dev. 7, 1779-1795.
19. Kingston, R.E., Bunker, C.A., and Imbalzano, A.N. (1996). Repression and activation by multiprotein complexes that alter chromatin structure. Genes Dev. 10, 905-920.
20. Kretzschmar, M., Kaiser, K., Lottspeich, F., and Meisterernst, M. (1994). A novel mediator of class II gene transcription with homology to viral immediate-early transcriptional regulators. Cell 78, 525-534.
21. Kwon, H., Imbalzano, A.N., Khavari, P.A., Kingston, R.E., and Green, M.R. (1994). Nucleosome disruption and enhancement of activator binding by a human SWI/SNF complex. Nature 370, 477-481.
22. Laskey, R.A., Honda, B.M., Mills, A.D., and Finch, J.T. (1978). Nucleosomes are assembled by an acidic protein which binds histones and transfers them to DNA. Nature 275, 416-420.
23. Luse, D.S., Kochel, T., Kuempel, E.D., Coppola, J.A., and Cai, H. (1987). Transcription initiation by RNA polymerase II in vitro: at least two nucleotides must be added to form a stable ternary complex. J. Biol. Chem. 252, 289-297.
24. Ma, D., Olave, I., Merino, A., and Reinberg, D. (1996). Separation of the transcriptional coactivator and antirepression functions of transcription factor IIA. Proc. Natl. Acad. Sci. USA 93, 6583-6588.
25. Maldonado, E., Drapkin, R., and Reinberg, D. (1996). Purification of human RNA polymerase II and general transcription factors. Methods Enzymol. 274, 72-100.
26. McClure, W.R., Cech, C.H., and Johnston, D.E. (1978). A steady state assay for the RNA polymerase initiation reaction. J. Biol. Chem. 235, 8941-8948.
27. Merino, A., Madden, K.R., Lane, W.S., Champoux, J.J., and Reinberg, D. (1993). DNA topoisomerase I is involved in both repression and activation of transcription. Nature 365, 227-232.
28. Orphanides, G., Lagrange, T., and Reinberg, D. (1996). The general transcription factors of RNA polymerase II. Genes Dev. 10, 2657-2683.
29. Owen-Hughes, T., and Workman, J.L. (1994). Experimental analysis of chromatin function in transcription control. Crit. Revs. Euk. Gene Exp. 4, 403-441.
30. Pazin, M.J., Kamakaka, R.T., and Kadonaga, J.T. (1994). ATP-dependent nucleosome reconfiguration and transcriptional activation from preassembled chromatin templates. Science 266, 2007-2001.
31. Peterson, C.L. (1996). Multiple Switches to turn on chromatin. Curr. Opin. Gen. Dev. 6, 171-175.
32. Reece, R.J., Rickles, R.J., and Ptashne, M. (1993). Overproduction and single-step purification of GAL4 fusion proteins from Escherichia coli. Gene 126, 105-107.
33. Roeder, R.G. (1996). The role of the general initiation factors in transcription by RNA polymerase II. Trends Biochem. Sci. 21, 327-335.
34. Sadowski, I., Ma, J., Treizenberg, S., and Ptashne, M. (1988). Gal4-VP16 is an unusually potent transcriptional activator. Nature 335, 563-564.
35. Tsukiyama, T., and Wu, C. (1995). Purification and properties of an ATP-dependent nucleosome remodeling factor. Cell 83, 1011-1020.
36. Tsukiyama, T., Becker, P.B., and Wu, C. (1994). ATP-dependent nucleosome disruption at a heat-shock promoter mediated by binding of GAGA transcription factor. Nature 367, 525-532.
37. Tsukiyama, T., Daniel, C., Tamkun, J., and Wu, C. (1995). ISWI, a member of the SWI2/SNF2 ATPase family encodes the 140 kDa subunit of the nucleosome remodeling factor. Cell 83, 1021-1026.
38. Ucker, D.S., and Yamamoto, K.R. (1984). Early events in the stimulation of mammary tumour virus RNA synthesis by glucocorticoids. J. Biol. Chem. 259, 7416-7420.
39. Varga-Weisz, P.D., Blank, T.A., and Becker, P.B. (1995). Energy-dependent chromatin accessibility and nucleosome mobility in a cell-free system. EMBO J. 14, 2209-2216.
40. Varga-Weisz, P.D., Wilm, M., Bonte, E., Dumas, K., Mann, M., and Becker, P.B. (1997). Chromatin remodeling factor CHRAC contains the ATPases ISWI and topoisomerase II. Nature 388, 598-599.
41. Wade, P.A., and Wolffe, A.P. (1997). Chromatin: histone acetyltransferases in control. Curr. Biol. 7, R82-R84.
42. Wang, W., Cote, J., Xue, Y., Zhou, S., Khavari, P.A., Biggar, S.R., Muchardt, C., Kalpana, G.V., Goff, S.P., Yaniv, M., et al. (1996). Purification and biochemical heterogeneity of the mammalian SWI-SNF complex. EMBO J. 15, 5370-5382.
43. Wolffe, A.P. (1994). Switched-on chromatin. Curr. Biol. 4, 523-528.
44. Wolffe, A.P., and Hayes, J.J. (1993). Transcription factor interactions with model nucleosomal templates. Methods Mol. Genet. 2, 314-330.
45. Workman, J.L., and Roeder, R.G. (1987). Binding of transcription factor TFIID to the major late promoter during in vitro nucleosome assembly potentiates subsequent initiation by RNA polymerase II. Cell 51, 613-622.
46. Yankulov, K., Blau, J., Purton, T., Roberts, S., and Bentley, D.L. (1994). Transcriptional elongation is stimulated by transactivators. Cell 77, 749-759.
47. Zhou, Q., Lieberman, P.M., Boyer, T.G., and Berk, A.J. (1992). Holo-TFIID supports transcriptional stimulation by diverse activators and from TATA-less promoters. Genes Dev. 6, 1964-1974.