The middle region of an HP1-binding protein, HP1-BP74, associates with linker DNA at the entry/exit site of nucleosomal DNA

Journal of Biological Chemistry

Volumn 285, Issue 9, 2010, Pages 6498-6507

  Hayashihara, Kayoko ^a   Uchiyama, Susumu ^a   Shimamoto, Shigeru ^a   Kobayashi, Shouhei ^a   Tomschik, Miroslav ^b   Wakamatsu, Hidekazu ^a   No, Daisuke ^a   Sugahara, Hiroki ^a   Hori, Naoto ^a   Noda, Masanori ^a   Ohkubo, Tadayasu ^a   Zlatanova, Jordanka ^b   Matsunaga, Sachihiro ^a   Fukui, Kiichi ^a  

^a OSAKA UNIVERSITY   (Japan)

^b UNIVERSITY OF WYOMING   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID RESIDUES; BINDING PROPERTIES; BINDING PROTEINS; CHROMATIN FIBERS; DAUGHTER CELLS; DECONDENSATION; DNA MOLECULES; ENTRY/EXIT; EUKARYOTIC CELLS; GLOBULAR DOMAINS; IN-VITRO; LINKER DNA; LINKER HISTONES; METAPHASE CHROMOSOMES; MONONUCLEOSOMES; NUCLEASE DIGESTION; NUCLEOSOMES; SOLUTION STRUCTURES;

AMINO ACIDS; BINDING ENERGY; COMPLEXATION; DNA; GENES; ORGANIC ACIDS; PLANTS (BOTANY); SODIUM CHLORIDE;

PROTEINS;

BINDING PROTEIN; BINDING PROTEIN 74; HETEROCHROMATIN PROTEIN 1; MICROCOCCAL NUCLEASE; UNCLASSIFIED DRUG; DNA; DNA BINDING PROTEIN; HETEROCHROMATIN SPECIFIC NONHISTONE CHROMOSOMAL PROTEIN HP 1; HETEROCHROMATIN-SPECIFIC NONHISTONE CHROMOSOMAL PROTEIN HP-1; HP1 BP74 PROTEIN, HUMAN; HP1-BP74 PROTEIN, HUMAN; NONHISTONE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CHROMATIN STRUCTURE; CHROMOSOME; CONTROLLED STUDY; DNA BINDING; DNA HISTONE INTERACTION; HUMAN; HUMAN CELL; METAPHASE; NUCLEAR MAGNETIC RESONANCE; NUCLEOSOME; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN DEGRADATION; PROTEIN DETERMINATION; PROTEIN DOMAIN; PROTEIN LOCALIZATION; PROTEIN PROTEIN INTERACTION; RESIDUE ANALYSIS; STRUCTURE ANALYSIS; BINDING SITE; CHEMISTRY; HUMAN CHROMOSOME; METABOLISM; PROTEIN CONFORMATION;

EUKARYOTA;

BINDING SITES; CHROMOSOMAL PROTEINS, NON-HISTONE; CHROMOSOMES, HUMAN; DNA; DNA-BINDING PROTEINS; HUMANS; METAPHASE; NUCLEOSOMES; PROTEIN BINDING; PROTEIN CONFORMATION;

EID: 77949909978     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M109.092833     Document Type: Article

References (62)

1. Flemming, W. (1882) Zellsubstanz, Kern und Zelltheilung, Verlag Vogel, Leipzig, Germany
2. Sumner, A. T. (2003) Chromosomes: Organization and Function, pp. 5-142, Wiley-Blackwell, Oxford
3. Fukui, K., and Uchiyama, S. (2007) Chem. Rec. 7, 230-237
4. Takata, H., Uchiyama, S., Nakamura, N., Nakashima, S., Kobayashi, S., Sone, T., Kimura, S., Lahmers, S., Granzier, H., Labeit, S., Matsunaga, S., and Fukui, K. (2007) Genes Cells 12, 269-284
5. Uchiyama, S., Kobayashi, S., Takata, H., Ishihara, T., Hori, N., Higashi, T., Hayashihara, K., Sone, T., Higo, D., Nirasawa, T., Takao, T., Matsunaga, S., and Fukui, K. (2005) J. Biol. Chem. 280, 16994-17004
6. Hirano, T. (2005) Curr. Biol. 15, R265-275
7. Ono, T., Losada, A., Hirano, M., Myers, M. P., Neuwald, A. F., and Hirano, T. (2003) Cell 115, 109-121
8. Yeong, F. M., Hombauer, H., Wendt, K. S., Hirota, T., Mudrak, I., Mechtler, K., Loregger, T., Marchler-Bauer, A., Tanaka, K., Peters, J. M., and Ogris, E. (2003) Curr. Biol. 13, 2058-2064
9. Hudson, D. F., Vagnarelli, P., Gassmann, R., and Earnshaw, W. C. (2003) Dev. Cell 5, 323-336
10. Vagnarelli, P., Hudson, D. F., Ribeiro, S. A., Trinkle-Mulcahy, L., Spence, J. M., Lai, F., Farr, C. J., Lamond, A. I., and Earnshaw, W. C. (2006) Nat. Cell Biol. 8, 1133-1142
11. Maeshima, K., and Laemmli, U. K. (2003) Dev. Cell 4, 467-480
12. Chang, C. J., Goulding, S., Earnshaw, W. C., and Carmena, M. (2003) J. Cell Sci. 116, 4715-4726
13. Carpenter, A. J., and Porter, A. C. (2004) Mol. Biol. Cell 15, 5700-5711
14. Sakaguchi, A., and Kikuchi, A. (2004) J. Cell Sci. 117, 1047-1054
15. Zlatanova, J., Seebart, C., and Tomschik, M. (2008) Trends Biochem. Sci 33, 247-253
16. Ohsumi, K., Katagiri, C., and Kishimoto, T. (1993) Science 262, 2033-2035
17. Shen, X., Yu, L., Weir, J. W., and Gorovsky, M. A. (1995) Cell 82, 47-56
18. Maresca, T. J., Freedman, B. S., and Heald, R. (2005) J. Cell Biol. 169, 859-869
19. Le Douarin, B., Nielsen, A. L., Garnier, J. M., Ichinose, H., Jeanmougin, F., Losson, R., and Chambon, P. (1996) EMBO J. 15, 6701-6715
20. Hiragami, K., and Festenstein, R. (2005) Cell Mol. Life Sci. 62, 2711-2726
21. Hayashihara, K., Uchiyama, S., Kobayashi, S., Yanagisawa, M., Matsunaga, S., and Fukui, K. (2008) Protocols Network 10.1038/nprot.2008.166
22. Gasser, S. M., and Laemmli, U. K. (1987) Exp. Cell Res. 173, 85-98
23. Fan, J. Y., Zhou, J., and Tremethick, D. J. (2007) Methods 41, 286-290
24. Georgel, P., Demeler, B., Terpening, C., Paule, M. R., and van Holde, K. E. (1993) J. Biol. Chem. 268, 1947-1954
25. von Holt, C., Brandt, W. F., Greyling, H. J., Lindsey, G. G., Retief, J. D., Rodrigues, J. D., Schwager, S., and Sewell, B. T. (1989) Methods Enzymol. 170, 431-523
26. Luger, K., Rechsteiner, T. J., and Richmond, T. J. (1999) Methods Mol. Biol. 119, 1-16
27. Kay, L. E. (1995) Prog. Biophys. Mol. Biol. 63, 277-299
28. Bax, A., Delaglio, F., Grzesiek, S., and Vuister, G. W. (1994) J. Biomol.NMR 4, 787-797
29. Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) J. Biomol. NMR 6, 277-293
30. Cornilescu, G., Delaglio, F., and Bax, A. (1999) J. Biomol. NMR 13, 289-302
31. Wüthrch, K. (1986) NMR of Proteins and Nucleic Acids, John Wiley & Sons, Inc., New York
32. Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. D Biol. Crystallogr. 54, 905-921
33. Koradi, R., Billeter, M., and Wüthrich, K. (1996) J. Mol. Graph. 14, 51-55
34. Laskowski, R. A., Rullmannn, J. A., MacArthur, M. W., Kaptein, R., and Thornton, J. M. (1996) J. Biomol. NMR 8, 477-486
35. Gambe, A. E., Ono, R. M., Matsunaga, S., Kutsuna, N., Higaki, T., Higashi, T., Hasezawa, S., Uchiyama, S., and Fukui, K. (2007) Cytometry A 71, 286-296
36. Paulson, J. R., and Laemmli, U. K. (1977) Cell 12, 817-828
37. Gasser, S. M., Laroche, T., Falquet, J., Boy de la Tour, E., and Laemmli, U. K. (1986) J. Mol. Biol. 188, 613-629
38. Saitoh, N., Goldberg, I. G., Wood, E. R., and Earnshaw, W. C. (1994) J. Cell Biol. 127, 303-318
39. Morrison, C., Henzing, A. J., Jensen, O. N., Osheroff, N., Dodson, H., Kandels-Lewis, S. E., Adams, R. R., and Earnshaw, W. C. (2002) Nucleic Acids Res. 30, 5318-5327
40. Burton, D. R., Butler, M. J., Hyde, J. E., Phillips, D., Skidmore, C. J., and Walker, I. O. (1978) Nucleic Acids Res. 5, 3643-3663
41. Ura, K., Nightingale, K., and Wolffe, A. P. (1996) EMBO J. 15, 4959-4969
42. Cerf, C., Lippens, G., Ramakrishnan, V., Muyldermans, S., Segers, A., Wyns, L., Wodak, S. J., and Hallenga, K. (1994) Biochemistry 33, 11079-11086
43. Ramakrishnan, V., Finch, J. T., Graziano, V., Lee, P. L., and Sweet, R. M. (1993) Nature 362, 219-223
44. Lechner, M. S., Schultz, D. C., Negorev, D., Maul, G. G., and Rauscher, F. J., 3rd (2005) Biochem. Biophys. Res. Commun. 331, 929-937
45. Cherukuri, S., Hock, R., Ueda, T., Catez, F., Rochman, M., and Bustin, M. (2008) Mol. Biol. Cell 19, 1816-1824
46. Brasher, S. V., Smith, B. O., Fogh, R. H., Nietlispach, D., Thiru, A., Nielsen, P. R., Broadhurst, R. W., Ball, L. J., Murzina, N. V., and Laue, E. D. (2000) EMBO J. 19, 1587-1597
47. Thiru, A., Nietlispach, D., Mott, H. R., Okuwaki, M., Lyon, D., Nielsen, P. R., Hirshberg, M., Verreault, A., Murzina, N. V., and Laue, E. D. (2004) EMBO J. 23, 489-499
48. Lechner, M. S., Begg, G. E., Speicher, D. W., and Rauscher, F. J., 3rd (2000) Mol. Cell. Biol. 20, 6449-6465
49. Happel, N., and Doenecke, D. (2009) Gene 431, 1-12
50. Rasheed, B. K., Whisenant, E. C., Ghai, R. D., Papaioannou, V. E., and Bhatnagar, Y. M. (1989) J. Cell Sci. 94, 61-71
51. Parseghian, M. H., Henschen, A. H., Krieglstein, K. G., and Hamkalo, B. A. (1994) Protein Sci. 3, 575-587
52. Khochbin, S., and Wolffe, A. P. (1994) Eur. J. Biochem. 225, 501-510
53. Seyedin, S. M., Cole, R. D., and Kistler, W. S. (1981) Exp. Cell Res. 136, 399-405
54. Martianov, I., Brancorsini, S., Catena, R., Gansmuller, A., Kotaja, N., Parvinen, M., Sassone-Corsi, P., and Davidson, I. (2005) Proc. Natl. Acad. Sci. U.S.A. 102, 2808-2813
55. Tanaka, H., Matsuoka, Y., Onishi, M., Kitamura, K., Miyagawa, Y., Nishimura, H., Tsujimura, A., Okuyama, A., and Nishimune, Y. (2006) Int. J. Androl. 29, 353-359
56. Tanaka, M., Hennebold, J. D., Macfarlane, J., and Adashi, E. Y. (2001) Development 128, 655-664
57. Yan, W., Ma, L., Burns, K. H., and Matzuk, M. M. (2003) Proc. Natl. Acad. Sci. U.S.A. 100, 10546-10551
58. Yamamoto, T., and Horikoshi, M. (1996) Gene 173, 281-285
59. Brown, D. T., Izard, T., and Misteli, T. (2006) Nat. Struct. Mol. Biol. 13, 250-255
60. Hamiche, A., Schultz, P., Ramakrishnan, V., Oudet, P., and Prunell, A. (1996) J. Mol. Biol. 257, 30-42
61. Takata, H., Matsunaga, S., Morimoto, A., Ono-Maniwa, R., Uchiyama, S., and Fukui, K. (2007) FEBS Lett. 581, 3783-3788
62. Gould, H. (1998) Chromatin: A Practical Approach, pp. 22-26, IRL Press at Oxford University Press, Oxford