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Volumn 8, Issue 2, 2013, Pages

Efficient Methods for Targeted Mutagenesis in Zebrafish Using Zinc-Finger Nucleases: Data from Targeting of Nine Genes Using CompoZr or CoDA ZFNs

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; NUCLEASE; SCATTER FACTOR RECEPTOR; STAT3 PROTEIN; TRANSCRIPTION ACTIVATOR LIKE EFFECTOR NUCLEASE; UNCLASSIFIED DRUG; ZINC FINGER NUCLEASE;

EID: 84874344182     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0057239     Document Type: Article
Times cited : (54)

References (45)
  • 4
    • 33749208029 scopus 로고    scopus 로고
    • Morphants: a new systematic vertebrate functional genomics approach
    • Ekker SC, (2000) Morphants: a new systematic vertebrate functional genomics approach. Yeast 17: 302-306.
    • (2000) Yeast , vol.17 , pp. 302-306
    • Ekker, S.C.1
  • 6
    • 79960208675 scopus 로고    scopus 로고
    • Forward and reverse genetic approaches for the analysis of vertebrate development in the zebrafish
    • Lawson ND, Wolfe SA, (2011) Forward and reverse genetic approaches for the analysis of vertebrate development in the zebrafish. Developmental cell 21: 48-64.
    • (2011) Developmental Cell , vol.21 , pp. 48-64
    • Lawson, N.D.1    Wolfe, S.A.2
  • 7
    • 12644303221 scopus 로고    scopus 로고
    • The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio
    • Haffter P, Granato M, Brand M, Mullins MC, Hammerschmidt M, et al. (1996) The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio. Development 123: 1-36.
    • (1996) Development , vol.123 , pp. 1-36
    • Haffter, P.1    Granato, M.2    Brand, M.3    Mullins, M.C.4    Hammerschmidt, M.5
  • 9
    • 33746874835 scopus 로고    scopus 로고
    • Methods for reverse genetic screening in zebrafish by resequencing and TILLING
    • Sood R, English MA, Jones M, Mullikin J, Wang DM, et al. (2006) Methods for reverse genetic screening in zebrafish by resequencing and TILLING. Methods 39: 220-227.
    • (2006) Methods , vol.39 , pp. 220-227
    • Sood, R.1    English, M.A.2    Jones, M.3    Mullikin, J.4    Wang, D.M.5
  • 12
    • 80052957070 scopus 로고    scopus 로고
    • Mutant generation in vertebrate model organisms by TILLING
    • Winkler S, Gscheidel N, Brand M, (2011) Mutant generation in vertebrate model organisms by TILLING. Methods in molecular biology 770: 475-504.
    • (2011) Methods in Molecular Biology , vol.770 , pp. 475-504
    • Winkler, S.1    Gscheidel, N.2    Brand, M.3
  • 13
    • 80054962146 scopus 로고    scopus 로고
    • Targeted mutation of the talpid3 gene in zebrafish reveals its conserved requirement for ciliogenesis and Hedgehog signalling across the vertebrates
    • Ben J, Elworthy S, Ng AS, van Eeden F, Ingham PW, (2011) Targeted mutation of the talpid3 gene in zebrafish reveals its conserved requirement for ciliogenesis and Hedgehog signalling across the vertebrates. Development 138: 4969-4978.
    • (2011) Development , vol.138 , pp. 4969-4978
    • Ben, J.1    Elworthy, S.2    Ng, A.S.3    van Eeden, F.4    Ingham, P.W.5
  • 14
    • 84866072998 scopus 로고    scopus 로고
    • Highly efficient generation of heritable zebrafish gene mutations using homo- and heterodimeric TALENs
    • Cade L, Reyon D, Hwang WY, Tsai SQ, Patel S, et al. (2012) Highly efficient generation of heritable zebrafish gene mutations using homo- and heterodimeric TALENs. Nucleic acids research.
    • (2012) Nucleic Acids Research
    • Cade, L.1    Reyon, D.2    Hwang, W.Y.3    Tsai, S.Q.4    Patel, S.5
  • 15
    • 84866156176 scopus 로고    scopus 로고
    • Simple Methods for Generating and Detecting Locus-Specific Mutations Induced with TALENs in the Zebrafish Genome
    • Dahlem TJ, Hoshijima K, Jurynec MJ, Gunther D, Starker CG, et al. (2012) Simple Methods for Generating and Detecting Locus-Specific Mutations Induced with TALENs in the Zebrafish Genome. PLoS genetics 8: e1002861.
    • (2012) PLoS Genetics , vol.8
    • Dahlem, T.J.1    Hoshijima, K.2    Jurynec, M.J.3    Gunther, D.4    Starker, C.G.5
  • 16
    • 44949155482 scopus 로고    scopus 로고
    • Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases
    • Doyon Y, McCammon JM, Miller JC, Faraji F, Ngo C, et al. (2008) Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases. Nature biotechnology 26: 702-708.
    • (2008) Nature Biotechnology , vol.26 , pp. 702-708
    • Doyon, Y.1    McCammon, J.M.2    Miller, J.C.3    Faraji, F.4    Ngo, C.5
  • 18
    • 79961185942 scopus 로고    scopus 로고
    • Heritable gene targeting in zebrafish using customized TALENs
    • Huang P, Xiao A, Zhou M, Zhu Z, Lin S, et al. (2011) Heritable gene targeting in zebrafish using customized TALENs. Nature biotechnology 29: 699-700.
    • (2011) Nature Biotechnology , vol.29 , pp. 699-700
    • Huang, P.1    Xiao, A.2    Zhou, M.3    Zhu, Z.4    Lin, S.5
  • 19
    • 44949162060 scopus 로고    scopus 로고
    • Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases
    • Meng X, Noyes MB, Zhu LJ, Lawson ND, Wolfe SA, (2008) Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases. Nature biotechnology 26: 695-701.
    • (2008) Nature Biotechnology , vol.26 , pp. 695-701
    • Meng, X.1    Noyes, M.B.2    Zhu, L.J.3    Lawson, N.D.4    Wolfe, S.A.5
  • 20
    • 84861361409 scopus 로고    scopus 로고
    • Improved somatic mutagenesis in zebrafish using transcription activator-like effector nucleases (TALENs)
    • Moore FE, Reyon D, Sander JD, Martinez SA, Blackburn JS, et al. (2012) Improved somatic mutagenesis in zebrafish using transcription activator-like effector nucleases (TALENs). PloS one 7: e37877.
    • (2012) PloS One , vol.7
    • Moore, F.E.1    Reyon, D.2    Sander, J.D.3    Martinez, S.A.4    Blackburn, J.S.5
  • 22
    • 80053069040 scopus 로고    scopus 로고
    • Evaluation and application of modularly assembled zinc-finger nucleases in zebrafish
    • Zhu C, Smith T, McNulty J, Rayla AL, Lakshmanan A, et al. (2011) Evaluation and application of modularly assembled zinc-finger nucleases in zebrafish. Development 138: 4555-4564.
    • (2011) Development , vol.138 , pp. 4555-4564
    • Zhu, C.1    Smith, T.2    McNulty, J.3    Rayla, A.L.4    Lakshmanan, A.5
  • 23
    • 80053343092 scopus 로고    scopus 로고
    • TAL effectors: customizable proteins for DNA targeting
    • Bogdanove AJ, Voytas DF, (2011) TAL effectors: customizable proteins for DNA targeting. Science 333: 1843-1846.
    • (2011) Science , vol.333 , pp. 1843-1846
    • Bogdanove, A.J.1    Voytas, D.F.2
  • 24
    • 78651270582 scopus 로고    scopus 로고
    • TAL nucleases (TALNs): hybrid proteins composed of TAL effectors and FokI DNA-cleavage domain
    • Li T, Huang S, Jiang WZ, Wright D, Spalding MH, et al. (2011) TAL nucleases (TALNs): hybrid proteins composed of TAL effectors and FokI DNA-cleavage domain. Nucleic acids research 39: 359-372.
    • (2011) Nucleic Acids Research , vol.39 , pp. 359-372
    • Li, T.1    Huang, S.2    Jiang, W.Z.3    Wright, D.4    Spalding, M.H.5
  • 25
    • 23444441147 scopus 로고    scopus 로고
    • Gene targeting using zinc finger nucleases
    • Porteus MH, Carroll D, (2005) Gene targeting using zinc finger nucleases. Nature biotechnology 23: 967-973.
    • (2005) Nature Biotechnology , vol.23 , pp. 967-973
    • Porteus, M.H.1    Carroll, D.2
  • 27
    • 34447319080 scopus 로고    scopus 로고
    • An improved zinc-finger nuclease architecture for highly specific genome editing
    • Miller JC, Holmes MC, Wang J, Guschin DY, Lee YL, et al. (2007) An improved zinc-finger nuclease architecture for highly specific genome editing. Nature biotechnology 25: 778-785.
    • (2007) Nature Biotechnology , vol.25 , pp. 778-785
    • Miller, J.C.1    Holmes, M.C.2    Wang, J.3    Guschin, D.Y.4    Lee, Y.L.5
  • 28
    • 34447323568 scopus 로고    scopus 로고
    • Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleases
    • Szczepek M, Brondani V, Buchel J, Serrano L, Segal DJ, et al. (2007) Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleases. Nature biotechnology 25: 786-793.
    • (2007) Nature Biotechnology , vol.25 , pp. 786-793
    • Szczepek, M.1    Brondani, V.2    Buchel, J.3    Serrano, L.4    Segal, D.J.5
  • 31
    • 84866879789 scopus 로고    scopus 로고
    • Iterative capped assembly: rapid and scalable synthesis of repeat-module DNA such as TAL effectors from individual monomers
    • Briggs AW, Rios X, Chari R, Yang L, Zhang F, et al. (2012) Iterative capped assembly: rapid and scalable synthesis of repeat-module DNA such as TAL effectors from individual monomers. Nucleic acids research 40: e117.
    • (2012) Nucleic Acids Research , vol.40
    • Briggs, A.W.1    Rios, X.2    Chari, R.3    Yang, L.4    Zhang, F.5
  • 32
    • 79960064013 scopus 로고    scopus 로고
    • Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting
    • Cermak T, Doyle EL, Christian M, Wang L, Zhang Y, et al. (2011) Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting. Nucleic acids research 39: e82.
    • (2011) Nucleic Acids Research , vol.39
    • Cermak, T.1    Doyle, E.L.2    Christian, M.3    Wang, L.4    Zhang, Y.5
  • 33
    • 84861409753 scopus 로고    scopus 로고
    • Rapid mutation of endogenous zebrafish genes using zinc finger nucleases made by Oligomerized Pool ENgineering (OPEN)
    • Foley JE, Yeh JR, Maeder ML, Reyon D, Sander JD, et al. (2009) Rapid mutation of endogenous zebrafish genes using zinc finger nucleases made by Oligomerized Pool ENgineering (OPEN). PloS one 4: e4348.
    • (2009) PloS One , vol.4
    • Foley, J.E.1    Yeh, J.R.2    Maeder, M.L.3    Reyon, D.4    Sander, J.D.5
  • 34
    • 70349146995 scopus 로고    scopus 로고
    • Oligomerized pool engineering (OPEN): an 'open-source' protocol for making customized zinc-finger arrays
    • Maeder ML, Thibodeau-Beganny S, Sander JD, Voytas DF, Joung JK, (2009) Oligomerized pool engineering (OPEN): an 'open-source' protocol for making customized zinc-finger arrays. Nature protocols 4: 1471-1501.
    • (2009) Nature Protocols , vol.4 , pp. 1471-1501
    • Maeder, M.L.1    Thibodeau-Beganny, S.2    Sander, J.D.3    Voytas, D.F.4    Joung, J.K.5
  • 35
    • 78650863981 scopus 로고    scopus 로고
    • Selection-free zinc-finger-nuclease engineering by context-dependent assembly (CoDA)
    • Sander JD, Dahlborg EJ, Goodwin MJ, Cade L, Zhang F, et al. (2011) Selection-free zinc-finger-nuclease engineering by context-dependent assembly (CoDA). Nature methods 8: 67-69.
    • (2011) Nature Methods , vol.8 , pp. 67-69
    • Sander, J.D.1    Dahlborg, E.J.2    Goodwin, M.J.3    Cade, L.4    Zhang, F.5
  • 36
    • 84861170955 scopus 로고    scopus 로고
    • A transcription activator-like effector toolbox for genome engineering
    • Sanjana NE, Cong L, Zhou Y, Cunniff MM, Feng G, et al. (2012) A transcription activator-like effector toolbox for genome engineering. Nature protocols 7: 171-192.
    • (2012) Nature Protocols , vol.7 , pp. 171-192
    • Sanjana, N.E.1    Cong, L.2    Zhou, Y.3    Cunniff, M.M.4    Feng, G.5
  • 37
    • 79751487297 scopus 로고    scopus 로고
    • Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription
    • Zhang F, Cong L, Lodato S, Kosuri S, Church GM, et al. (2011) Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription. Nature biotechnology 29: 149-153.
    • (2011) Nature Biotechnology , vol.29 , pp. 149-153
    • Zhang, F.1    Cong, L.2    Lodato, S.3    Kosuri, S.4    Church, G.M.5
  • 39
    • 78650912707 scopus 로고    scopus 로고
    • Enhancing zinc-finger-nuclease activity with improved obligate heterodimeric architectures
    • Doyon Y, Vo TD, Mendel MC, Greenberg SG, Wang J, et al. (2011) Enhancing zinc-finger-nuclease activity with improved obligate heterodimeric architectures. Nature methods 8: 74-79.
    • (2011) Nature Methods , vol.8 , pp. 74-79
    • Doyon, Y.1    Vo, T.D.2    Mendel, M.C.3    Greenberg, S.G.4    Wang, J.5
  • 41
    • 0001506104 scopus 로고    scopus 로고
    • Modulation of non-templated nucleotide addition by Taq DNA polymerase: primer modifications that facilitate genotyping
    • Brownstein MJ, Carpten JD, Smith JR, (1996) Modulation of non-templated nucleotide addition by Taq DNA polymerase: primer modifications that facilitate genotyping. BioTechniques 20: 1004-1006, 1008-1010.
    • (1996) BioTechniques , vol.20 , pp. 1004-1006
    • Brownstein, M.J.1    Carpten, J.D.2    Smith, J.R.3
  • 43
    • 80052293623 scopus 로고    scopus 로고
    • Revealing off-target cleavage specificities of zinc-finger nucleases by in vitro selection
    • Pattanayak V, Ramirez CL, Joung JK, Liu DR, (2011) Revealing off-target cleavage specificities of zinc-finger nucleases by in vitro selection. Nature methods 8: 765-770.
    • (2011) Nature Methods , vol.8 , pp. 765-770
    • Pattanayak, V.1    Ramirez, C.L.2    Joung, J.K.3    Liu, D.R.4
  • 44
    • 77953702888 scopus 로고    scopus 로고
    • Directed evolution of an enhanced and highly efficient FokI cleavage domain for zinc finger nucleases
    • Guo J, Gaj T, Barbas CF 3rd, (2010) Directed evolution of an enhanced and highly efficient FokI cleavage domain for zinc finger nucleases. Journal of molecular biology 400: 96-107.
    • (2010) Journal of Molecular Biology , vol.400 , pp. 96-107
    • Guo, J.1    Gaj, T.2    Barbas 3rd, C.F.3
  • 45
    • 78651341148 scopus 로고    scopus 로고
    • Zinc finger protein-dependent and -independent contributions to the in vivo off-target activity of zinc finger nucleases
    • Gupta A, Meng X, Zhu LJ, Lawson ND, Wolfe SA, (2011) Zinc finger protein-dependent and-independent contributions to the in vivo off-target activity of zinc finger nucleases. Nucleic acids research 39: 381-392.
    • (2011) Nucleic Acids Research , vol.39 , pp. 381-392
    • Gupta, A.1    Meng, X.2    Zhu, L.J.3    Lawson, N.D.4    Wolfe, S.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.