Evaluating the potential nonthermal microwave effects of microwave-assisted proteolytic reactions

Journal of Proteomics

Volumn 80, Issue , 2013, Pages 160-170

  Reddy, P Muralidhar ^a   Huang, Yu Shan ^a   Chen, Cheng Tung ^a   Chang, Po Chi ^a   Ho, Yen Peng ^a  

^a NATIONAL DONG HWA UNIVERSITY   (Taiwan)

Author keywords

Enzyme; Mass spectrometry; Microwave; Nonthermal effect; Protein digestion

Indexed keywords

ACETAMIDE DERIVATIVE; N METHYLIODOACETAMIDE; UNCLASSIFIED DRUG; CYTOCHROME; ENZYME; IODOACETAMIDE; N-METHYLIODOACETAMIDE; PEPTIDE; PROTEIN; TRYPSIN;

ARTICLE; CHEMICAL REACTION; CHEMICAL STRUCTURE; HEATING; MASS SPECTROMETRY; MICROWAVE ASSISTED PROTEOLYTIC DIGESTION; MICROWAVE RADIATION; NONTHERMAL MICROWAVE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DEGRADATION; SYNTHESIS; TEMPERATURE; ANALOGS AND DERIVATIVES; ANIMAL; BOVINE; CHEMISTRY; CHICKEN; HEAT; HUMAN; PROTEOMICS;

ANIMALS; CATTLE; CHICKENS; CYTOCHROMES; ENZYMES; HOT TEMPERATURE; HUMANS; IODOACETAMIDE; MASS SPECTROMETRY; MICROWAVES; PEPTIDES; PROTEINS; PROTEOLYSIS; PROTEOMICS; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TEMPERATURE; TRYPSIN;

EID: 84874001843     PISSN: 18743919     EISSN: 18767737     Source Type: Journal    
DOI: 10.1016/j.jprot.2013.01.005     Document Type: Article

References (48)

1. Kuhnert N. Microwave-assisted reactions in organic synthesis-are there any nonthermal microwave effects?. Angew Chem Int Ed 2002, 41:1863-1866.
2. de la Hoz A., Diaz-Ortiz A., Moreno A. Microwaves in organic synthesis. Thermal and non-thermal microwave effects. Chem Soc Rev 2005, 34:164-178.
3. Kappe C.O., Dallinger D. The impact of microwave synthesis on drug discovery. Nat Rev Drug Discov 2006, 5:51-63.
4. Zhu Y.-J., Wang W.-W., Qi R.-J., Hu X.-L. Microwave-assisted synthesis of single-crystalline tellurium nanorods and nanowires in ionic liquids. Angew Chem Int Ed 2004, 43:1410-1414.
5. Pramanik B.N., Mirza U.A., Ing Y.H., Liu Y.H., Bartner P.L., Weber P.C., et al. Microwave-enhanced enzyme reaction for protein mapping by mass spectrometry: a new approach to protein digestion in minutes. Protein Sci 2002, 11:2676-2687.
6. Lill J.R., Ingle E.S., Liu P.S., Pham V., Sandoval W.N. Microwave-assisted proteomics. Mass Spectrom Rev 2007, 26:657-671.
7. Tsuji M., Hashimoto M., Nishizawa Y., Kubokawa M., Tsuji T. Microwave-assisted synthesis of metallic nanostructures in solution. Chem Eur J 2005, 11:440-452.
8. Bachu P., Gibson J.S., Sperry J., Brimble M.A. The influence of microwave irradiation on lipase-catalyzed kinetic resolution of racemic secondary alcohols. Tetrahedron Asymmetry 2007, 18:1618-1624.
9. Razzaq T., Kremsner J.M., Kappe C.O. Investigating the existence of nonthermal/specific microwave effects using silicon carbide heating elements as power modulators. J Org Chem 2008, 73:6321-6329.
10. de Souza R.O.M.A., Antunes O.A.C., Kroutil W., Kappe C.O. Kinetic resolution of rac-1-phenylethanol with immobilized lipases: a critical comparison of microwave and conventional heating protocols. J Org Chem 2009, 74:6157-6162.
11. Kanno M., Nakamura K., Kanai E., Hoki K., Kono H., Tanaka M. Theoretical verification of nonthermal microwave effects on intramolecular reactions. J Phys Chem A 2012, 116:2177-2183.
12. Hinou H., Saito N., Ogawa M., Maeda T., Nishimura S.-I. Microwave effect for glycosylation promoted by solid super acid in supercritical carbon dioxide. Int J Mol Sci 2009, 10:5285-5295.
13. Herrero M.A., Kremsner J.M., Kappe C.O. Nonthermal microwave effects revisited: on the importance of internal temperature monitoring and agitation in microwave chemistry. J Org Chem 2008, 73:36-47.
14. Shimizu H., Yoshimura Y., Hinou H., Nishimura S.-I. A new glycosylation method part 3: study of microwave effects at low temperatures to control reaction pathways and reduce byproducts. Tetrahedron 2008, 64:10091-10096.
15. George D.F., Bilek M.M., McKenzie D.R. Non-thermal effects in the microwave induced unfolding of proteins observed by chaperone binding. Bioelectromagnetics 2008, 29:324-330.
16. Bohr H., Bohr J. Microwave-enhanced folding and denaturation of globular proteins. Phys Rev E 2000, 61:4310.
17. de Pomerai D.I., Smith B., Dawe A., North K., Smith T., Archer D.B., et al. Microwave radiation can alter protein conformation without bulk heating. FEBS Lett 2003, 543:93-97.
18. Aebersold R., Mann M. Mass spectrometry-based proteomics. Nature 2003, 422:198-207.
19. Ho Y.-P., Reddy P.M. Advances in mass spectrometry for the identification of pathogens. Mass Spectrom Rev 2011, 30:1203-1224.
20. Ho Y.-P., Reddy P.M. Identification of pathogens by mass spectrometry. Clin Chem 2010, 56:525-536.
21. Park Z.Y., Russell D.H. Thermal denaturation: a useful technique in peptide mass mapping. Anal Chem 2000, 72:2667-2670.
22. Russell W.K., Park Z.Y., Russell D.H. Proteolysis in mixed organic-aqueous solvent systems: applications for peptide mass mapping using mass spectrometry. Anal Chem 2001, 73:2682-2685.
23. Lopez-Ferrer D., Capelo J.L., Vazquez J. Ultra fast trypsin digestion of proteins by high intensity focused ultrasound. J Proteome Res 2005, 4:1569-1574.
24. Peterson D.S., Rohr T., Svec F., Frechet J.M.J. Dual-function microanalytical device by in situ photolithographic grafting of porous polymer monolith: integrating solid-phase extraction and enzymatic digestion for peptide mass mapping. Anal Chem 2003, 75:5328-5335.
25. Slysz G.W., Schriemer D.C. Blending protein separation and peptide analysis through real-time proteolytic digestion. Anal Chem 2005, 77:1572-1579.
26. Juan H.F., Chang S.C., Huang H.C., Chen S.T. A new application of microwave technology to proteomics. Proteomics 2005, 5:840-842.
27. Vesper H.W., Mi L.C., Enada A., Myers G.L. Assessment of microwave-assisted enzymatic digestion by measuring glycated hemoglobin A1c by mass spectrometry. Rapid Commun Mass Spectrom 2005, 19:2865-2870.
28. Sun W., Gao S., Wang L., Chen Y., Wu S., Wang X., et al. Microwave-assisted protein preparation and enzymatic digestion in proteomics. Mol Cell Proteomics 2006, 5:769-776.
29. Lin S., Lin Z.X., Yao G.P., Deng C.H., Yang P.Y., Zhang X.M. Development of microwave-assisted protein digestion based on trypsin-immobilized magnetic microspheres for highly efficient proteolysis followed by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry analysis. Rapid Commun Mass Spectrom 2007, 21:3910-3918.
30. Fenselau C., Laine O., Swatkoski S. Microwave assisted acid cleavage for denaturation and proteolysis of intact human adenovirus. Int J Mass Spectrom 2011, 301:7-11.
31. Li J.X., Shefcheck K., Callahan J., Fenselau C. Extension of microwave-accelerated residue-specific acid cleavage to proteins with carbohydrate side chains and disulfide linkages. Int J Mass Spectrom 2008, 278:109-113.
32. Swatkoski S., Gutierrez P., Wynne C., Petrov A., Dinman J.D., Edwards N., et al. Evaluation of microwave-accelerated residue-specific acid cleavage for proteomic applications. J Proteome Res 2008, 7:579-586.
33. Zhong H., Zhang Y., Wen Z., Li L. Protein sequencing by mass analysis of polypeptide ladders after controlled protein hydrolysis. Nat Biotechnol 2004, 22:1291-1296.
34. Zhong H., Marcus S.L., Li L. Microwave-assisted acid hydrolysis of proteins combined with liquid chromatography MALDI MS/MS for protein identification. J Am Soc Mass Spectrom 2005, 16:471-481.
35. Hua L., Low T.Y., Sze S.K. Microwave-assisted specific chemical digestion for rapid protein identification. Proteomics 2006, 6:586-591.
36. Chen W.-Y., Chen Y.-C. Acceleration of microwave-assisted enzymatic digestion reactions by magnetite beads. Anal Chem 2007, 79:2394-2401.
37. Lin S., Yao G., Qi D., Li Y., Deng C., Yang P., et al. Fast and efficient proteolysis by microwave-assisted protein digestion using trypsin-immobilized magnetic silica microspheres. Anal Chem 2008, 80:3655-3665.
38. Lin S., Yun D., Qi D., Deng C., Li Y., Zhang X. Novel microwave-assisted digestion by trypsin-immobilized magnetic nanoparticles for proteomic analysis. J Proteome Res 2008, 7:1297-1307.
39. Shirvas K., Kailasa S.K., Wu H.F. Quantum dots - electrospray ionization mass spectrometry: 3-mercaptopropanic acid capped CdS quantum dots as accelerating and enrichment probes for microwave tryptic digestion of proteins. Rapid Commun Mass Spectrom 2009, 23:3603-3607.
40. Shrivas K., Kailasa S.K., Wu H.F. Quantum dots laser desorption/ionization MS: multifunctional CdSe quantum dots as the matrix, concentrating probes and acceleration for microwave enzymatic digestion for peptide analysis and high resolution detection of proteins in a linear MALDI-TOF MS. Proteomics 2009, 9:2656-2667.
41. Shastri L.A., Kailasa S.K., Wu H.F. Cysteine-capped ZnSe quantum dots as affinity and accelerating probes for microwave enzymatic digestion of proteins via direct matrix-assisted laser desorption/ionization time-of-flight mass spectrometric analysis. Rapid Commun Mass Spectrom 2009, 23:2247-2252.
42. Wu H.F., Agrawal K., Shrivas K., Lee Y.H. On particle ionization/enrichment of multifunctional nanoprobes: washing/separation-free, acceleration and enrichment of microwave-assisted tryptic digestion of proteins via bare TiO2 nanoparticles in ESI-MS and comparing to MALDI-MS. J Mass Spectrom 2010, 45:1402-1408.
43. Lin S.-S., Wu C.-H., Sun M.-C., Sun C.-M., Ho Y.-P. Microwave-assisted enzyme-catalyzed reactions in various solvent systems. J Am Soc Mass Spectrom 2005, 16:581-588.
44. Reddy P.M., Hsu W.Y., Hu J.F., Ho Y.P. Digestion completeness of microwave-assisted and conventional trypsin-catalyzed reactions. J Am Soc Mass Spectrom 2010, 21:421-424.
45. Ramseier U., Chang J.Y. Modification of cysteine residues with n-methyl iodoacetamide. Anal Biochem 1994, 221:231-233.
46. Sun M.-C., Chen C.-D., Huang Y.-S., Wu Z.-S., Ho Y.-P. Matrix-assisted laser desorption/ionization-MS-based relative quantification of peptides and proteins using iodoacetamide and N-methyliodoacetamide as labeling reagents. J Sep Sci 2008, 31:538-547.
47. Havlis J., Thomas H., Sebela M., Shevchenko A. Fast-response proteomics by accelerated in-gel digestion of proteins. Anal Chem 2003, 75:1300-1306.
48. Damm M., Nusshold C., Cantillo D., Rechberger G.N., Gruber K., Sattler W., et al. Can electromagnetic fields influence the structure and enzymatic digest of proteins? A critical evaluation of microwave-assisted proteomics protocols. J Proteomics 2012, 75:5533-5543.