Microwave-assisted protein preparation and enzymatic digestion in proteomics

Molecular and Cellular Proteomics

Volumn 5, Issue 4, 2006, Pages 769-776

  Sun, Wei ^a   Gao, Shijuan ^b   Wang, Linjie ^b   Chen, Yong ^b   Wu, Shuzhen ^b   Wang, Xiaorong ^b   Zheng, Dexian ^b   Gao, Youhe ^a  

^a PEKING UNION MEDICAL COLLEGE   (China)

^b INSTITUTE OF BASIC MEDICAL SCIENCES   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BOVINE SERUM ALBUMIN; PEPTIDE FRAGMENT;

ARTICLE; BIOTECHNOLOGY; CELL LYSATE; CONTROLLED STUDY; ENZYME DEGRADATION; HUMAN; HUMAN EXPERIMENT; ION TRAP MASS SPECTROMETRY; LIQUID CHROMATOGRAPHY; MALE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MEDICAL RESEARCH; MICROWAVE RADIATION; NORMAL HUMAN; PRIORITY JOURNAL; PROCESS OPTIMIZATION; PROTEIN ANALYSIS; PROTEIN URINE LEVEL; PROTEOMICS;

BOVINAE;

EID: 33645714858     PISSN: 15359476     EISSN: None     Source Type: Journal    
DOI: 10.1074/mcp.T500022-MCP200     Document Type: Article

References (35)

1. Wasinger, V. C., Cordwell, S. J., Cerpa-Poljak, A., Yan, J. X., Gooley, A. A., Wilkins, M. R., Duncan, M. W., Harris, R., Williams, K. L., and Humphery-Smith, I. (1995) Progress with gene-product mapping of the Mollicutes: Mycoplasma genitalium. Electrophoresis 16, 1090-1094
2. Kahn, P. (1995) From genome to proteome: looking at a cell's proteins. Science 270, 369-370
3. Washburn, M. P., Wolters, D., and Yates, J. R. (2001) Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol. 19, 242-247
4. Wolters, D. A., Washburn, M. P., and Yates, J. R. (2001) An automated multidimensional protein identification technology for shotgun proteomics. Anal. Chem. 73, 5683-5690
5. Zhu, H., Bilgin, M., and Snyder, M. (2003) Proteomics. Annu. Rev. Biochem. 72, 783-812
6. Kelleher, N. L. (2004) Top-down proteomics. Anal. Chem. 76, 197-203
7. Yates, J. R. (2004) Mass spectral analysis in proteomics. Annu. Rev. Biophys. Biomol. Struct. 33, 297-316
8. Rabilloud, T. (2002) Two-dimensional gel electrophoresis in proteomics: old, old fashioned, but it still climbs up the mountains. Proteomics 2, 3-10
9. Opiteck, G. J., Lewis, K. C., Jorgenson, J. W., and Anderegg, R. J. (1997) Comprehensive on-line LC/LC/MS of proteins. Anal. Chem. 69, 1518-1524
10. Kachman, M. T., Wang, H. X., Schwartz, D. R., Cho, K. R., and Lubman, D. M. (2002) A 2-D liquid separations/mass mapping method for interlysate comparison of ovarian cancers. Anal. Chem. 74, 1779-1791
11. Liu, H. J., Berger, S. J., Chakraborty, A. B., Plumb, R. S., and Cohen, S. A. (2002) Multidimensional chromatography coupled to electrospray ionization time-of-flight mass spectrometry as an alternative to two-dimensional gels for the identification and analysis of complex mixtures of intact proteins. J. Chromatogr. B 782, 267-289
12. VerBerkmoes, N. C., Bundy, J. L., Hauser, L., Asano, K. G., Razumovskaya, J., Larimer, F., Hettich, R. L., and Stephenson, J. L. (2002) Integrating "top-down" and "bottom-up" mass spectrometric approaches for proteomic analysis of Shewanella oneidensis. J. Proteome Res. 1, 239-252
13. Havlis, J., Thomas, H., Sebela, M., and Shevchenko, A. (2003) Fast-response proteomics by accelerated in-gel digestion of proteins. Anal. Chem. 75, 1300-1306
14. Cooper, J. W., Chen, J. Z., Li, Y., and Lee, C. S. (2003) Membrane-based nanoscale proteolytic reactor enabling protein digestion, peptide separation, and protein identification using mass spectrometry. Anal. Chem. 75, 1067-1074
15. Ye, M. L., Hu, S., Schoenherr, R. M., and Dovichi, N. J. (2004) On-line protein digestion and peptide mapping by capillary electrophoresis with post-column labeling for laser-induced fluorescence detection. Electrophoresis 25, 1319-1326
16. Kato, M., Sakai-Kato, K., Jin, H. M., Kubota, K., Miyano, H., Toyooka, T., Dulay, M. T., and Zare, R. N. (2004) Integration of on-line protein digestion, peptide separation, and protein identification using pepsin-coated photopolymerized sol-gel columns and capillary electrophoresis/mass spectrometry. Anal. Chem. 76, 1896-1902
17. Slysz, G. W., and Schriemer, D. C. (2005) Blending protein separation and peptide analysis through real-time proteolytic digestion. Anal. Chem. 77, 1572-1579
18. Juan, H. F., Chang, S. C., Huang, H. C., and Chen, S. T. (2005) A new application of microwave technology to proteomics. Proteomics 5, 840-842
19. Pramanik, N. B., Mirza, U. A., Ning, Y. H., Liu, Y. H., Bartner, P. L., Weber, P. C., and Bose, A. K. (2002) Microwave-enhanced enzyme reaction for protein mapping by mass spectrometry: a new approach to protein digestion in minutes. Protein Sci. 11, 2676-2687
20. Lin, S. S., Wu, C. H., Sun, M. C., Sun, C. M., and Ho, Y. P. (2005) Microwave-assisted enzyme-catalyzed reactions in various solvent systems. J. Am. Soc. Mass. Spectrom. 16, 581-588
21. Chen, S. T., Chiou, S. H., and Wang, K. T. (1991) Enhancement of chemical reactions by microwave irradiation. J. Chin. Chem. Soc. 38, 85-91
22. Zhong, H. Y., Zhang, Y., Wen, Z. H., and Li, L. (2004) Protein sequencing by mass analysis of polypeptide ladders after controlled protein hydrolysis. Nat. Biotech. 22, 1291-1296
23. Zhong, H., Marcus, S. L., and Li, L. (2005) Microwave-assisted acid hydrolysis of proteins combined with liquid chromatography MALDI MS/MS for protein identification. J. Am. Soc. Mass Spectrom. 16, 471-481
24. Sun, W., Li, F. X., Wu, S. Z., Wang, X. R., Zheng, D. X., and Gao, Y. H. (2005) Human urinary proteome analysis by three separation approaches. Proteomics 5, 4994-5001
25. Peng, J., Elias, J. E., Thoreen, C. C., Licklider, L. J., and Gygi, S. P. (2003) Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome. J. Proteome Res. 2, 43-50
26. Nesatyy, V. J., Dacanay, A., Kelly, J. F., and Ross, N. W. (2002) Microwave-assisted protein staining: mass spectrometry compatible methods for rapid protein visualization. Rapid Commun. Mass Spectrom. 16, 270-280
27. Bose, A. K., Banik, B. K., Lavlinskaia, N., Jayaraman, M., and Manhas, M. S. (1997) MORE chemistry in a microwave. Chemtech 27, 18-24
28. Giguere, R. J., Bray, T. L., Duncan, S. M., and Majeich, G. (1986) Application of commercial microwave ovens to organic synthesis. Tetrahedron Lett. 27, 4945-4948
29. Shevchenko, A., Wilm, M., Vorm, O., and Mann, M. (1996) Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. Anal. Chem. 68, 850-858
30. Borchers, C., Peter, J. F., Hall, M. C., Kunkel, T. A., and Tomer, K. B. (2000) Identification of in-gel digested proteins by complementary peptide mass fingerprinting and tandem mass spectrometry data obtained on an electrospray ionization quadrupole time-of-flight mass spectrometer. Anal. Chem. 72, 1163-1168
31. Sun, W., Wu, S. Z., Wang, X. R., Zheng, D. X., and Gao, Y. H. (2004) A systematical analysis of tryptic peptide identification with reverse phase liquid chromatography and electrospray ion trap mass spectrometry. Genomics Proteomics Bioinformatics 2, 174-183
32. Sun, W., Wang, X. R., Wu, S. Z., Zheng, D. X., and Gao, Y. H. (2005) An analysis of protein abundance suppression in proteomics research with five protein digestion mixtures. Eur. J. Mass Spectrom. 11, 575-580
33. Liu, H., Sadygov, R. G., and Yates, J. R., III (2004) A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal. Chem. 76, 4193-4201
34. Wierenga, S. K., Zocher, M. J., Mirus, M. M., Conrads, T. P., Goshe, M. B., and Veenstra, T. D. (2002) A method to evaluate tryptic digestion efficiency for high-throughput proteome analysis. Rapid Commun. Mass Spectrom. 16, 1404-1408
35. Havlis, J., and Shevchenko, A. (2004) Absolute quantification of proteins in solutions and in polyacrylamide gels by mass spectrometry. Anal. Chem. 76, 3029-3036