-
1
-
-
0028918401
-
A proficient enzyme
-
Radzicka, A. and Wolfenden, R. (1995) A proficient enzyme Science 267, 90-93
-
(1995)
Science
, vol.267
, pp. 90-93
-
-
Radzicka, A.1
Wolfenden, R.2
-
2
-
-
0035997393
-
Catalytic proficiency: The unusual case of OMP decarboxylase
-
Miller, B. G. and Wolfenden, R. (2002) Catalytic proficiency: the unusual case of OMP decarboxylase Annu. Rev. Biochem. 71, 847-885
-
(2002)
Annu. Rev. Biochem.
, vol.71
, pp. 847-885
-
-
Miller, B.G.1
Wolfenden, R.2
-
3
-
-
84865724889
-
Proton Transfer from C-6 of Uridine 5′-Monophosphate Catalyzed by Orotidine 5′-Monophosphate Decarboxylase: Formation and Stability of a Vinyl Carbanion Intermediate and the Effect of a 5-Fluoro Substituent
-
Tsang, W.-Y., Wood, B. M., Wong, F. M., Wu, W., Gerlt, J. A., Amyes, T. L., and Richard, J. P. (2012) Proton Transfer from C-6 of Uridine 5′-Monophosphate Catalyzed by Orotidine 5′-Monophosphate Decarboxylase: Formation and Stability of a Vinyl Carbanion Intermediate and the Effect of a 5-Fluoro Substituent J. Am. Chem. Soc. 134, 14580-14594
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 14580-14594
-
-
Tsang, W.-Y.1
Wood, B.M.2
Wong, F.M.3
Wu, W.4
Gerlt, J.A.5
Amyes, T.L.6
Richard, J.P.7
-
4
-
-
77952556805
-
Product Deuterium Isotope Effects for Orotidine 5′-Monophosphate Decarboxylase: Effect of Changing Substrate and Enzyme Structure on the Partitioning of the Vinyl Carbanion Reaction Intermediate
-
Toth, K., Amyes, T. L., Wood, B. M., Chan, K., Gerlt, J. A., and Richard, J. P. (2010) Product Deuterium Isotope Effects for Orotidine 5′-Monophosphate Decarboxylase: Effect of Changing Substrate and Enzyme Structure on the Partitioning of the Vinyl Carbanion Reaction Intermediate J. Am. Chem. Soc. 132, 7018-7024
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 7018-7024
-
-
Toth, K.1
Amyes, T.L.2
Wood, B.M.3
Chan, K.4
Gerlt, J.A.5
Richard, J.P.6
-
6
-
-
35848965479
-
Product Deuterium Isotope Effect for Orotidine 5′-Monophosphate Decarboxylase: Evidence for the Existence of a Short-Lived Carbanion Intermediate
-
Toth, K., Amyes, T. L., Wood, B. M., Chan, K., Gerlt, J. A., and Richard, J. P. (2007) Product Deuterium Isotope Effect for Orotidine 5′-Monophosphate Decarboxylase: Evidence for the Existence of a Short-Lived Carbanion Intermediate J. Am. Chem. Soc. 129, 12946-12947
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 12946-12947
-
-
Toth, K.1
Amyes, T.L.2
Wood, B.M.3
Chan, K.4
Gerlt, J.A.5
Richard, J.P.6
-
7
-
-
69049083638
-
An Examination of the Relationship between Active Site Loop Size and Thermodynamic Activation Parameters for Orotidine 5′-Monophosphate Decarboxylase from Mesophilic and Thermophilic Organisms
-
Toth, K., Amyes, T. L., Wood, B. M., Chan, K. K., Gerlt, J. A., and Richard, J. P. (2009) An Examination of the Relationship between Active Site Loop Size and Thermodynamic Activation Parameters for Orotidine 5′-Monophosphate Decarboxylase from Mesophilic and Thermophilic Organisms Biochemistry 48, 8006-8013
-
(2009)
Biochemistry
, vol.48
, pp. 8006-8013
-
-
Toth, K.1
Amyes, T.L.2
Wood, B.M.3
Chan, K.K.4
Gerlt, J.A.5
Richard, J.P.6
-
8
-
-
0034718457
-
Yeast Orotidine-5′-Phosphate Decarboxylase: Steady-State and Pre-Steady-State Analysis of the Kinetic Mechanism of Substrate Decarboxylation
-
Porter, D. J. T. and Short, S. A. (2000) Yeast Orotidine-5′- Phosphate Decarboxylase: Steady-State and Pre-Steady-State Analysis of the Kinetic Mechanism of Substrate Decarboxylation Biochemistry 39, 11788-11800
-
(2000)
Biochemistry
, vol.39
, pp. 11788-11800
-
-
Porter, D.J.T.1
Short, S.A.2
-
9
-
-
0016624901
-
Binding Energy, Specificity and Enzymic Catalysis: The Circe Effect
-
Jencks, W. P. (1975) Binding Energy, Specificity and Enzymic Catalysis: The Circe Effect Adv. Enzymol. Relat. Areas Mol. Biol. 43, 219-410
-
(1975)
Adv. Enzymol. Relat. Areas Mol. Biol.
, vol.43
, pp. 219-410
-
-
Jencks, W.P.1
-
11
-
-
27844574242
-
Activation of orotidine 5′-monophosphate decarboxylase by phosphite dianion: The whole substrate is the sum of two parts
-
Amyes, T. L., Richard, J. P., and Tait, J. J. (2005) Activation of orotidine 5′-monophosphate decarboxylase by phosphite dianion: The whole substrate is the sum of two parts J. Am. Chem. Soc. 127, 15708-15709
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 15708-15709
-
-
Amyes, T.L.1
Richard, J.P.2
Tait, J.J.3
-
12
-
-
48249090425
-
Dissecting the Total Transition State Stabilization Provided by Amino Acid Side Chains at Orotidine 5′-Monophosphate Decarboxylase: A Two-Part Substrate Approach
-
Barnett, S. A., Amyes, T. L., Wood, B. M., Gerlt, J. A., and Richard, J. P. (2008) Dissecting the Total Transition State Stabilization Provided by Amino Acid Side Chains at Orotidine 5′-Monophosphate Decarboxylase: A Two-Part Substrate Approach Biochemistry 47, 7785-7787
-
(2008)
Biochemistry
, vol.47
, pp. 7785-7787
-
-
Barnett, S.A.1
Amyes, T.L.2
Wood, B.M.3
Gerlt, J.A.4
Richard, J.P.5
-
13
-
-
84862196265
-
Orotidine 5′-monophosphate decarboxylase: Transition state stabilization from remote protein-phosphodianion interactions
-
Amyes, T. L., Ming, S. A., Goldman, L. M., Wood, B. M., Desai, B. J., Gerlt, J. A., and Richard, J. P. (2012) Orotidine 5′-monophosphate decarboxylase: Transition state stabilization from remote protein-phosphodianion interactions Biochemistry 51, 4630-4632
-
(2012)
Biochemistry
, vol.51
, pp. 4630-4632
-
-
Amyes, T.L.1
Ming, S.A.2
Goldman, L.M.3
Wood, B.M.4
Desai, B.J.5
Gerlt, J.A.6
Richard, J.P.7
-
14
-
-
67649210974
-
Mechanism of the Orotidine 5′-Monophosphate Decarboxylase-Catalyzed Reaction: Evidence for Substrate Destabilization
-
Chan, K. K., Wood, B. M., Fedorov, A. A., Fedorov, E. V., Imker, H. J., Amyes, T. L., Richard, J. P., Almo, S. C., and Gerlt, J. A. (2009) Mechanism of the Orotidine 5′-Monophosphate Decarboxylase-Catalyzed Reaction: Evidence for Substrate Destabilization Biochemistry 48, 5518-5531
-
(2009)
Biochemistry
, vol.48
, pp. 5518-5531
-
-
Chan, K.K.1
Wood, B.M.2
Fedorov, A.A.3
Fedorov, E.V.4
Imker, H.J.5
Amyes, T.L.6
Richard, J.P.7
Almo, S.C.8
Gerlt, J.A.9
-
15
-
-
0030567338
-
a of Ethyl Acetate: Brønsted Correlation for Deprotonation of a Simple Oxygen Ester in Aqueous Solution
-
a of Ethyl Acetate: Brønsted Correlation for Deprotonation of a Simple Oxygen Ester in Aqueous Solution J. Am. Chem. Soc. 118, 3129-3141
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 3129-3141
-
-
Amyes, T.L.1
Richard, J.P.2
-
17
-
-
79955438648
-
OMP Decarboxylase: Phosphodianion Binding Energy Is Used to Stabilize a Vinyl Carbanion Intermediate
-
Goryanova, B., Amyes, T. L., Gerlt, J. A., and Richard, J. P. (2011) OMP Decarboxylase: Phosphodianion Binding Energy Is Used To Stabilize a Vinyl Carbanion Intermediate J. Am. Chem. Soc. 133, 6545-6548
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 6545-6548
-
-
Goryanova, B.1
Amyes, T.L.2
Gerlt, J.A.3
Richard, J.P.4
-
18
-
-
67649173263
-
Mechanism of the Orotidine 5′-Monophosphate Decarboxylase-Catalyzed Reaction: Effect of Solvent Viscosity on Kinetic Constants
-
Wood, B. M., Chan, K. K., Amyes, T. L., Richard, J. P., and Gerlt, J. A. (2009) Mechanism of the Orotidine 5′-Monophosphate Decarboxylase-Catalyzed Reaction: Effect of Solvent Viscosity on Kinetic Constants Biochemistry 48, 5510-5517
-
(2009)
Biochemistry
, vol.48
, pp. 5510-5517
-
-
Wood, B.M.1
Chan, K.K.2
Amyes, T.L.3
Richard, J.P.4
Gerlt, J.A.5
-
19
-
-
75749143420
-
Activation of R235A Mutant Orotidine 5′-Monophosphate Decarboxylase by the Guanidinium Cation: Effective Molarity of the Cationic Side Chain of Arg-235
-
Barnett, S. A., Amyes, T. L., McKay Wood, B., Gerlt, J. A., and Richard, J. P. (2010) Activation of R235A Mutant Orotidine 5′-Monophosphate Decarboxylase by the Guanidinium Cation: Effective Molarity of the Cationic Side Chain of Arg-235 Biochemistry 49, 824-826
-
(2010)
Biochemistry
, vol.49
, pp. 824-826
-
-
Barnett, S.A.1
Amyes, T.L.2
McKay Wood, B.3
Gerlt, J.A.4
Richard, J.P.5
-
20
-
-
12844285698
-
The effective molarity of the substrate phosphoryl group in the transition state for yeast OMP decarboxylase
-
Sievers, A. and Wolfenden, R. (2005) The effective molarity of the substrate phosphoryl group in the transition state for yeast OMP decarboxylase Bioorg. Chem. 33, 45-52
-
(2005)
Bioorg. Chem.
, vol.33
, pp. 45-52
-
-
Sievers, A.1
Wolfenden, R.2
-
21
-
-
64349090835
-
Structure-activity relationships of orotidine-5′-monophosphate decarboxylase inhibitors as anticancer agents
-
Bello, A. M., Konforte, D., Poduch, E., Furlonger, C., Wei, L., Liu, Y., Lewis, M., Pai, E. F., Paige, C. J., and Kotra, L. P. (2009) Structure-activity relationships of orotidine-5′-monophosphate decarboxylase inhibitors as anticancer agents J. Med. Chem. 52, 1648-1658
-
(2009)
J. Med. Chem.
, vol.52
, pp. 1648-1658
-
-
Bello, A.M.1
Konforte, D.2
Poduch, E.3
Furlonger, C.4
Wei, L.5
Liu, Y.6
Lewis, M.7
Pai, E.F.8
Paige, C.J.9
Kotra, L.P.10
-
22
-
-
33646536978
-
A Facile, General Synthesis of 3,4-Difluoro-6-substituted-2-pyrones
-
Wang, Y. and Burton, D. J. (2006) A Facile, General Synthesis of 3,4-Difluoro-6-substituted-2-pyrones J. Org. Chem. 71, 3859-3862
-
(2006)
J. Org. Chem.
, vol.71
, pp. 3859-3862
-
-
Wang, Y.1
Burton, D.J.2
-
23
-
-
0000275866
-
The synthesis of orotidine 5′-phosphate
-
Moffatt, J. G. (1963) The synthesis of orotidine 5′-phosphate J. Am. Chem. Soc. 85, 1118-1123
-
(1963)
J. Am. Chem. Soc.
, vol.85
, pp. 1118-1123
-
-
Moffatt, J.G.1
-
24
-
-
0043122944
-
ExPASy: The proteomics server for in-depth protein knowledge and analysis
-
Gasteiger, E., Gattiker, A., Hoogland, C., Ivanyi, I., Appel, R. D., and Bairoch, A. (2003) ExPASy: The proteomics server for in-depth protein knowledge and analysis Nucleic Acids Res. 31, 3784-3788
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3784-3788
-
-
Gasteiger, E.1
Gattiker, A.2
Hoogland, C.3
Ivanyi, I.4
Appel, R.D.5
Bairoch, A.6
-
25
-
-
84868089459
-
Conformational changes in orotidine 5′-monophosphate decarboxylase: A structure-based explanation for how the 5′-phosphate group activates the enzyme
-
Desai, B. J., Wood, B. M., Fedorov, A. A., Fedorov, E. V., Goryanova, B., Amyes, T. L., Richard, J. P., Almo, S. C., and Gerlt, J. A. (2012) Conformational changes in orotidine 5′-monophosphate decarboxylase: A structure-based explanation for how the 5′-phosphate group activates the enzyme Biochemistry 51, 8665-8678
-
(2012)
Biochemistry
, vol.51
, pp. 8665-8678
-
-
Desai, B.J.1
Wood, B.M.2
Fedorov, A.A.3
Fedorov, E.V.4
Goryanova, B.5
Amyes, T.L.6
Richard, J.P.7
Almo, S.C.8
Gerlt, J.A.9
-
26
-
-
33847088916
-
Nonlinear Structure-Reactivity Correlations. Acyl Transfer between Sulfur and Oxygen Nucleophiles
-
Hupe, D. J. and Jencks, W. P. (1977) Nonlinear Structure-Reactivity Correlations. Acyl Transfer between Sulfur and Oxygen Nucleophiles J. Am. Chem. Soc. 99, 451-464
-
(1977)
J. Am. Chem. Soc.
, vol.99
, pp. 451-464
-
-
Hupe, D.J.1
Jencks, W.P.2
-
28
-
-
38849119713
-
Carbon isotope effect study on orotidine 5′-monophosphate decarboxylase: Support for an anionic intermediate
-
Van Vleet, J. L., Reinhardt, L. A., Miller, B. G., Sievers, A., and Cleland, W. W. (2008) Carbon isotope effect study on orotidine 5′-monophosphate decarboxylase: support for an anionic intermediate Biochemistry 47, 798-803
-
(2008)
Biochemistry
, vol.47
, pp. 798-803
-
-
Van Vleet, J.L.1
Reinhardt, L.A.2
Miller, B.G.3
Sievers, A.4
Cleland, W.W.5
-
29
-
-
0034102419
-
Electrostatic stress in catalysis: Structure and mechanism of the enzyme orotidine monophosphate decarboxylase
-
Wu, N., Mo, Y., Gao, J., and Pai, E. F. (2000) Electrostatic stress in catalysis: structure and mechanism of the enzyme orotidine monophosphate decarboxylase Proc. Natl. Acad. Sci. U. S. A. 97, 2017-2022
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 2017-2022
-
-
Wu, N.1
Mo, Y.2
Gao, J.3
Pai, E.F.4
-
30
-
-
0034104285
-
Anatomy of a proficient enzyme: The structure of orotidine 5′-monophosphate decarboxylase in the presence and absence of a potential transition state analog
-
Miller, B. G., Hassell, A. M., Wolfenden, R., Milburn, M. V., and Short, S. A. (2000) Anatomy of a proficient enzyme: the structure of orotidine 5′-monophosphate decarboxylase in the presence and absence of a potential transition state analog Proc. Natl. Acad. Sci. U. S. A. 97, 2011-2016
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 2011-2016
-
-
Miller, B.G.1
Hassell, A.M.2
Wolfenden, R.3
Milburn, M.V.4
Short, S.A.5
-
31
-
-
0034681950
-
Structural Basis for the Catalytic Mechanism of a Proficient Enzyme: Orotidine 5′-Monophosphate Decarboxylase
-
Harris, P., Poulsen, J.-C. N., Jensen, K. F., and Larsen, S. (2000) Structural Basis for the Catalytic Mechanism of a Proficient Enzyme: Orotidine 5′-Monophosphate Decarboxylase Biochemistry 39, 4217-4224
-
(2000)
Biochemistry
, vol.39
, pp. 4217-4224
-
-
Harris, P.1
Poulsen, J.-C.N.2
Jensen, K.F.3
Larsen, S.4
-
32
-
-
0034524410
-
The structural basis for the remarkable catalytic proficiency of orotidine 5′-monophosphate decarboxylase
-
Begley, T. P., Appleby, T. C., and Ealick, S. E. (2000) The structural basis for the remarkable catalytic proficiency of orotidine 5′- monophosphate decarboxylase Curr. Opin. Struct. Biol. 10, 711-718
-
(2000)
Curr. Opin. Struct. Biol.
, vol.10
, pp. 711-718
-
-
Begley, T.P.1
Appleby, T.C.2
Ealick, S.E.3
-
33
-
-
84859417694
-
A Paradigm for Enzyme-Catalyzed Proton Transfer at Carbon: Triosephosphate Isomerase
-
Richard, J. P. (2012) A Paradigm for Enzyme-Catalyzed Proton Transfer at Carbon: Triosephosphate Isomerase Biochemistry 51, 2652-2661
-
(2012)
Biochemistry
, vol.51
, pp. 2652-2661
-
-
Richard, J.P.1
-
34
-
-
78649649414
-
A role for flexible loops in enzyme catalysis
-
Malabanan, M. M., Amyes, T. L., and Richard, J. P. (2010) A role for flexible loops in enzyme catalysis Curr. Opin. Struct. Biol. 20, 702-710
-
(2010)
Curr. Opin. Struct. Biol.
, vol.20
, pp. 702-710
-
-
Malabanan, M.M.1
Amyes, T.L.2
Richard, J.P.3
-
35
-
-
42349086635
-
A Substrate in Pieces: Allosteric Activation of Glycerol 3-Phosphate Dehydrogenase (NAD+) by Phosphite Dianion
-
Tsang, W.-Y., Amyes, T. L., and Richard, J. P. (2008) A Substrate in Pieces: Allosteric Activation of Glycerol 3-Phosphate Dehydrogenase (NAD+) by Phosphite Dianion Biochemistry 47, 4575-4582
-
(2008)
Biochemistry
, vol.47
, pp. 4575-4582
-
-
Tsang, W.-Y.1
Amyes, T.L.2
Richard, J.P.3
-
36
-
-
43649086695
-
Phosphate Binding Energy and Catalysis by Small and Large Molecules
-
Morrow, J. R., Amyes, T. L., and Richard, J. P. (2008) Phosphate Binding Energy and Catalysis by Small and Large Molecules Acc. Chem. Res. 41, 539-548
-
(2008)
Acc. Chem. Res.
, vol.41
, pp. 539-548
-
-
Morrow, J.R.1
Amyes, T.L.2
Richard, J.P.3
|