-
1
-
-
0034724953
-
Architecture of RNA polymerase II and implications for the transcription mechanism
-
DOI 10.1126/science.288.5466.640
-
Cramer P, et al. (2000) Architecture of RNA polymerase II and implications for the transcription mechanism. Science 288:640-649. (Pubitemid 30241562)
-
(2000)
Science
, vol.288
, Issue.5466
, pp. 640-649
-
-
Cramer, P.1
Bushnell, D.A.2
Fu, J.3
Gnatt, A.L.4
Maier-Davis, B.5
Thompson, N.E.6
Burgess, R.R.7
Edwards, A.M.8
David, P.R.9
Kornberg, R.D.10
-
2
-
-
0035827346
-
Structural basis of transcription: RNA polymerase II at 2.8 Å resolution
-
DOI 10.1126/science.1059493
-
Cramer P, Bushnell DA, Kornberg RD (2001) Structural basis of transcription: RNA polymerase II at 2.8-Å resolution. Science 292:1863-1876. (Pubitemid 32538356)
-
(2001)
Science
, vol.292
, Issue.5523
, pp. 1863-1876
-
-
Cramer, P.1
Bushnell, D.A.2
Kornberg, R.D.3
-
3
-
-
0035827332
-
Structural basis of transcription: An RNA polymerase II elongation complex at 3.3 Å resolution
-
DOI 10.1126/science.1059495
-
Gnatt AL, Cramer P, Fu J, Bushnell DA, Kornberg RD (2001) Structural basis of transcription: An RNA polymerase II elongation complex at 3.3-Å resolution. Science 292:1876-1882. (Pubitemid 32538357)
-
(2001)
Science
, vol.292
, Issue.5523
, pp. 1876-1882
-
-
Gnatt, A.L.1
Cramer, P.2
Fu, J.3
Bushnell, D.A.4
Kornberg, R.D.5
-
4
-
-
0037123602
-
Structural basis of transcription initiation: An RNA polymerase holoenzyme-DNA complex
-
DOI 10.1126/science.1069595
-
Murakami KS, Masuda S, Campbell EA, Muzzin O, Darst SA (2002) Structural basis of transcription initiation: An RNA polymerase holoenzyme-DNA complex. Science 296:1285-1290. (Pubitemid 34522778)
-
(2002)
Science
, vol.296
, Issue.5571
, pp. 1285-1290
-
-
Murakami, K.S.1
Masuda, S.2
Campbell, E.A.3
Muzzin, O.4
Darst, S.A.5
-
5
-
-
0037123659
-
Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 Å resolution
-
DOI 10.1126/science.1069594
-
Murakami KS, Masuda S, Darst SA (2002) Structural basis of transcription initiation: RNA polymerase holoenzyme at 4-Å resolution. Science 296:1280-1284. (Pubitemid 34522777)
-
(2002)
Science
, vol.296
, Issue.5571
, pp. 1280-1284
-
-
Murakami, K.S.1
Masuda, S.2
Darst, S.A.3
-
6
-
-
0037071844
-
Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6. Å resolution
-
DOI 10.1038/nature752
-
Vassylyev DG, et al. (2002) Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6-Å resolution. Nature 417:712-719. (Pubitemid 34640620)
-
(2002)
Nature
, vol.417
, Issue.6890
, pp. 712-719
-
-
Vassylyev, D.G.1
Sekine, S.-I.2
Laptenko, O.3
Lee, J.4
Vassylyeva, M.N.5
Borukhov, S.6
Yokoyama, S.7
-
7
-
-
0033578701
-
Crystal structure of thermus aquaticus core RNA polymerase at 3.3 Å resolution
-
Zhang G, et al. (1999) Crystal structure of Thermus aquaticus core RNA polymerase at 3.3-Å resolution. Cell 98:811-824. (Pubitemid 129746823)
-
(1999)
Cell
, vol.98
, Issue.6
, pp. 811-824
-
-
Zhang, G.1
Campbell, E.A.2
Minakhin, L.3
Richter, C.4
Severinov, K.5
Darst, S.A.6
-
8
-
-
51949114423
-
Mutations of RNA polymerase II activate key genes of the nucleoside triphosphate biosynthetic pathways
-
Kwapisz M, et al. (2008) Mutations of RNA polymerase II activate key genes of the nucleoside triphosphate biosynthetic pathways. EMBO J 27:2411-2421.
-
(2008)
EMBO J
, vol.27
, pp. 2411-2421
-
-
Kwapisz, M.1
-
9
-
-
27144526242
-
A functional role for the switch 2 region of yeast RNA polymerase II in transcription start site utilization and abortive initiation
-
DOI 10.1074/jbc.M502932200
-
Majovski RC, Khaperskyy DA, Ghazy MA, Ponticelli AS (2005) A functional role for the switch 2 region of yeast RNA polymerase II in transcription start site utilization and abortive initiation. J Biol Chem 280:34917-34923. (Pubitemid 41504626)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.41
, pp. 34917-34923
-
-
Majovski, R.C.1
Khaperskyy, D.A.2
Ghazy, M.A.3
Ponticelli, A.S.4
-
10
-
-
44449103640
-
The RNA Polymerase II Trigger Loop Functions in Substrate Selection and Is Directly Targeted by α-Amanitin
-
DOI 10.1016/j.molcel.2008.04.023, PII S1097276508003262
-
Kaplan CD, Larsson KM, Kornberg RD (2008) The RNA polymerase II trigger loop functions in substrate selection and is directly targeted by α-amanitin. Mol Cell 30:547-556. (Pubitemid 351755064)
-
(2008)
Molecular Cell
, vol.30
, Issue.5
, pp. 547-556
-
-
Kaplan, C.D.1
Larsson, K.-M.2
Kornberg, R.D.3
-
11
-
-
34447499995
-
Structural basis for transcription elongation by bacterial RNA polymerase
-
DOI 10.1038/nature05932, PII NATURE05932
-
Vassylyev DG, Vassylyeva MN, Perederina A, Tahirov TH, Artsimovitch I (2007) Structural basis for transcription elongation by bacterial RNA polymerase. Nature 448:157-162. (Pubitemid 47067370)
-
(2007)
Nature
, vol.448
, Issue.7150
, pp. 157-162
-
-
Vassylyev, D.G.1
Vassylyeva, M.N.2
Perederina, A.3
Tahirov, T.H.4
Artsimovitch, I.5
-
12
-
-
34447513771
-
Structural basis for substrate loading in bacterial RNA polymerase
-
DOI 10.1038/nature05931, PII NATURE05931
-
Vassylyev DG, et al. (2007) Structural basis for substrate loading in bacterial RNA polymerase. Nature 448:163-168. (Pubitemid 47067369)
-
(2007)
Nature
, vol.448
, Issue.7150
, pp. 163-168
-
-
Vassylyev, D.G.1
Vassylyeva, M.N.2
Zhang, J.3
Palangat, M.4
Artsimovitch, I.5
Landick, R.6
-
13
-
-
33751235874
-
Structural Basis of Transcription: Role of the Trigger Loop in Substrate Specificity and Catalysis
-
DOI 10.1016/j.cell.2006.11.023, PII S0092867406014796
-
Wang D, Bushnell DA, Westover KD, Kaplan CD, Kornberg RD (2006) Structural basis of transcription: Role of the trigger loop in substrate specificity and catalysis. Cell 127:941-954. (Pubitemid 44792264)
-
(2006)
Cell
, vol.127
, Issue.5
, pp. 941-954
-
-
Wang, D.1
Bushnell, D.A.2
Westover, K.D.3
Kaplan, C.D.4
Kornberg, R.D.5
-
14
-
-
8344234112
-
Structural basis of transcription: Nucleotide selection by rotation in the RNA polymerase II active center
-
DOI 10.1016/j.cell.2004.10.016, PII S0092867404010013
-
Westover KD, Bushnell DA, Kornberg RD (2004) Structural basis of transcription: Nucleotide selection by rotation in the RNA polymerase II active center. Cell 119:481-489. (Pubitemid 39482348)
-
(2004)
Cell
, vol.119
, Issue.4
, pp. 481-489
-
-
Westover, K.D.1
Bushnell, D.A.2
Kornberg, R.D.3
-
17
-
-
44649196386
-
Functional integration of transcriptional and RNA processing machineries
-
Pandit S, Wang D, Fu XD (2008) Functional integration of transcriptional and RNA processing machineries. Curr Opin Cell Biol 20:260-265.
-
(2008)
Curr Opin Cell Biol
, vol.20
, pp. 260-265
-
-
Pandit, S.1
Wang, D.2
Fu, X.D.3
-
18
-
-
3242796702
-
The Schizosaccharomyces pombe open promoter bubble: Mammalian-like arrangement and properties
-
DOI 10.1016/j.jmb.2004.04.075, PII S0022283604005716
-
Choi WS, Lin YC, Gralla JD (2004) The Schizosaccharomyces pombe open promoter bubble: Mammalian-like arrangement and properties. J Mol Biol 340:981-989. (Pubitemid 38968696)
-
(2004)
Journal of Molecular Biology
, vol.340
, Issue.5
, pp. 981-989
-
-
Choi, W.S.1
Lin, Y.C.2
Gralla, J.D.3
-
19
-
-
23444439791
-
RNA polymerase II initiation factor interactions and transcription start site selection
-
Li Y, Flanagan PM, Tschochner H, Kornberg RD (1994) RNA polymerase II initiation factor interactions and transcription start site selection. Science 263:805-807. (Pubitemid 24093207)
-
(1994)
Science
, vol.263
, Issue.5148
, pp. 805-807
-
-
Li, Y.1
Flanagan, P.M.2
Tschochner, H.3
Kornberg, R.D.4
-
20
-
-
1142274214
-
Structural Basis of Transcription: An RNA Polymerase II-TFIIB Cocrystal at 4.5 Angstroms
-
DOI 10.1126/science.1090838
-
Bushnell DA, Westover KD, Davis RE, Kornberg RD (2004) Structural basis of transcription: An RNA polymerase II-TFIIB cocrystal at 4.5 Å. Science 303:983-988. (Pubitemid 38209696)
-
(2004)
Science
, vol.303
, Issue.5660
, pp. 983-988
-
-
Bushnell, D.A.1
Westover, K.D.2
Davis, R.E.3
Kornberg, R.D.4
-
21
-
-
0033553416
-
The role of human TFIIB in transcription start site selection in vitro and in vivo
-
Hawkes NA, Roberts SG (1999) The role of human TFIIB in transcription start site selection in vitro and in vivo. J Biol Chem 274:14337-14343. (Pubitemid 129518746)
-
(1999)
Journal of Biological Chemistry
, vol.274
, Issue.20
, pp. 14337-14343
-
-
Hawkes, N.A.1
Roberts, S.G.E.2
-
22
-
-
0032504245
-
The N-terminal region of yeast TFIIB contains two adjacent functional domains involved in stable RNA polymerase II binding and transcription start site selection
-
DOI 10.1074/jbc.273.28.17859
-
Pardee TS, Bangur CS, Ponticelli AS (1998) The N-terminal region of yeast TFIIB contains two adjacent functional domains involved in stable RNA polymerase II binding and transcription start site selection. J Biol Chem 273:17859-17864. (Pubitemid 28355132)
-
(1998)
Journal of Biological Chemistry
, vol.273
, Issue.28
, pp. 17859-17864
-
-
Pardee, T.S.1
Bangur, C.S.2
Ponticelli, A.S.3
-
23
-
-
0028019848
-
Characterization of sua7 mutations defines a domain of TFIIB involved in transcription start site selection in yeast
-
Pinto I, Wu WH, Na JG, Hampsey M (1994) Characterization of sua7 mutations defines a domain of TFIIB involved in transcription start site selection in yeast. J Biol Chem 269:30569-30573. (Pubitemid 24376541)
-
(1994)
Journal of Biological Chemistry
, vol.269
, Issue.48
, pp. 30569-30573
-
-
Pinto, I.1
Wu, W.-H.2
Na, J.G.3
Hampsey, M.4
-
24
-
-
0036303536
-
In vitro transcription and start site selection in Schizosaccharomyces pombe
-
DOI 10.1016/S0022-2836(02)00329-7
-
Choi WS, Yan M, Nusinow D, Gralla JD (2002) In vitro transcription and start site selection in Schizosaccharomyces pombe. J Mol Biol 319:1005-1013. (Pubitemid 34729414)
-
(2002)
Journal of Molecular Biology
, vol.319
, Issue.5
, pp. 1005-1013
-
-
Choi, W.S.1
Yan, M.2
Nusinow, D.3
Gralla, J.D.4
-
25
-
-
0027379051
-
A portion of RNA polymerase II molecules has a component essential for stress responses and stress survival
-
Choder M, Young RA (1993) A portion of RNA polymerase II molecules has a component essential for stress responses and stress survival. Mol Cell Biol 13:6984-6991. (Pubitemid 23321150)
-
(1993)
Molecular and Cellular Biology
, vol.13
, Issue.11
, pp. 6984-6991
-
-
Choder, M.1
Young, R.A.2
-
26
-
-
0032728876
-
Solution structure of the hRPABC14.4 subunit of human RNA polymerases
-
DOI 10.1038/14923
-
del Rio-Portilla F, Gaskell A, Gilbert D, Ladias JA, Wagner G (1999) Solution structure of the hRPABC14.4 subunit of human RNA polymerases. Nat Struct Biol 6:1039-1042. (Pubitemid 29519598)
-
(1999)
Nature Structural Biology
, vol.6
, Issue.11
, pp. 1039-1042
-
-
Del Rio-Portilla, F.1
Gaskell, A.2
Gilbert, D.3
Ladias, J.A.A.4
Wagner, G.5
-
27
-
-
33745839780
-
Structural, biochemical, and dynamic characterizations of the hRPB8 subunit of human RNA polymerases
-
DOI 10.1074/jbc.M513241200
-
Kang X, et al. (2006) Structural, biochemical, and dynamic characterizations of the hRPB8 subunit of human RNA polymerases. J Biol Chem 281:18216-18226. (Pubitemid 44035622)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.26
, pp. 18216-18226
-
-
Kang, X.1
Hu, Y.2
Li, Y.3
Guo, X.4
Jiang, X.5
Lai, L.6
Xia, B.7
Jin, C.8
-
28
-
-
28544436370
-
Crystal structure and RNA binding of the Rpb4/Rpb7 subunits of human RNA polymerase II
-
DOI 10.1093/nar/gki945
-
MekaH, Werner F, Cordell SC, Onesti S, Brick P (2005) Crystal structure andRNAbinding of the Rpb4/Rpb7 subunits of human RNA polymerase II. Nucleic Acids Res 33:6435-6444. (Pubitemid 41742580)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.19
, pp. 6435-6444
-
-
Meka, H.1
Werner, F.2
Cordell, S.C.3
Onesti, S.4
Brick, P.5
-
30
-
-
34547683177
-
The positions of TFIIF and TFIIE in the RNA polymerase II transcription preinitiation complex
-
DOI 10.1038/nsmb1272, PII NSMB1272
-
Chen HT, Warfield L, Hahn S (2007) The positions of TFIIF and TFIIE in the RNA polymerase II transcription preinitiation complex. Nat Struct Mol Biol 14:696-703. (Pubitemid 47220058)
-
(2007)
Nature Structural and Molecular Biology
, vol.14
, Issue.8
, pp. 696-703
-
-
Chen, H.-T.1
Warfield, L.2
Hahn, S.3
-
31
-
-
67249110911
-
Structure of the 12-subunit RNA polymerase II refined with the aid of anomalous diffraction data
-
Meyer PA, Ye P, Suh MH, Zhang M, Fu J (2009) Structure of the 12-subunit RNA polymerase II refined with the aid of anomalous diffraction data. J Biol Chem 284:12933-12939.
-
(2009)
J Biol Chem
, vol.284
, pp. 12933-12939
-
-
Meyer, P.A.1
Ye, P.2
Suh, M.H.3
Zhang, M.4
Fu, J.5
-
32
-
-
10944232674
-
Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS
-
DOI 10.1016/j.molcel.2004.11.040, PII S1097276504007300
-
Kettenberger H, Armache KJ, Cramer P (2004) Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS. Mol Cell 16:955-965. (Pubitemid 40018405)
-
(2004)
Molecular Cell
, vol.16
, Issue.6
, pp. 955-965
-
-
Kettenberger, H.1
Armache, K.-J.2
Cramer, P.3
-
33
-
-
49449102926
-
Structural basis of transcription inhibition by α-amanitin and implications for RNA polymerase II translocation
-
Brueckner F, Cramer P (2008) Structural basis of transcription inhibition by α-amanitin and implications for RNA polymerase II translocation. Nat Struct Mol Biol 15:811-818.
-
(2008)
Nat Struct Mol Biol
, vol.15
, pp. 811-818
-
-
Brueckner, F.1
Cramer, P.2
-
34
-
-
0035930324
-
Structure of an archaeal homolog of the eukaryotic RNA polymerase II RPB4/RPB7 complex
-
DOI 10.1016/S1097-2765(01)00379-3
-
Todone F, Brick P, Werner F, Weinzierl RO, Onesti S (2001) Structure of an archaeal homolog of the eukaryotic RNA polymerase II RPB4/RPB7 complex. Mol Cell 8:1137-1143. (Pubitemid 34031815)
-
(2001)
Molecular Cell
, vol.8
, Issue.5
, pp. 1137-1143
-
-
Todone, F.1
Brick, P.2
Werner, F.3
Weinzierl, R.O.J.4
Onesti, S.5
-
35
-
-
25844480848
-
RNA Pol II subunit Rpb7 promotes centromeric transcription and RNAi-directed chromatin silencing
-
DOI 10.1101/gad.344205
-
Djupedal I, et al. (2005) RNA Pol II subunit Rpb7 promotes centromeric transcription and RNAi-directed chromatin silencing. Genes Dev 19:2301-2306. (Pubitemid 41396907)
-
(2005)
Genes and Development
, vol.19
, Issue.19
, pp. 2301-2306
-
-
Djupedal, I.1
Portoso, M.2
Spahr, H.3
Bonilla, C.4
Gustafsson, C.M.5
Allshire, R.C.6
Ekwall, K.7
-
36
-
-
34247113782
-
Identification and characterization of a Schizosaccharomyces pombe RNA polymerase II elongation factor with similarity to the metazoan transcription factor ELL
-
DOI 10.1074/jbc.M610393200
-
Banks CA, et al. (2007) Identification and characterization of a Schizosaccharomyces pombe RNA polymerase II elongation factor with similarity to the metazoan transcription factor ELL. J Biol Chem 282:5761-5769. (Pubitemid 47093720)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.8
, pp. 5761-5769
-
-
Banks, C.A.S.1
Kong, S.E.2
Spahr, H.3
Florens, L.4
Martin-Brown, S.5
Washburn, M.P.6
Conaway, J.W.7
Mushegian, A.8
Conaway, R.C.9
-
38
-
-
0036850256
-
The CCP4 moleculargraphics project
-
Potterton E, McNicholas S, Krissinel E, Cowtan K, NobleM(2002) The CCP4 moleculargraphics project. Acta Crystallogr D 58:1955-1957.
-
(2002)
Acta Crystallogr D
, vol.58
, pp. 1955-1957
-
-
Potterton, E.1
McNicholas, S.2
Krissinel, E.3
Cowtan, K.4
Noble, M.5
-
39
-
-
23844546311
-
Likelihood-enhanced fast translation functions
-
DOI 10.1107/S0907444905001617
-
McCoy AJ, Grosse-Kunstleve RW, Storoni LC, Read RJ (2005) Likelihood-enhanced fast translation functions. Acta Crystallogr D 61:458-464. (Pubitemid 43934606)
-
(2005)
Acta Crystallographica Section D: Biological Crystallography
, vol.61
, Issue.4
, pp. 458-464
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Storoni, L.C.3
Read, R.J.4
-
40
-
-
3543012707
-
Crystallography and NMR system: A new software suite for macromolecular structure determination
-
DOI 10.1107/S0907444998003254
-
Brunger AT, et al. (1998) Crystallography and NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr D 54:905-921. (Pubitemid 28443603)
-
(1998)
Acta Crystallographica Section D: Biological Crystallography
, vol.54
, Issue.5
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.-S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
43
-
-
11844301261
-
Recent developments in the PHENIX software for automated crystallographic structure determination
-
DOI 10.1107/S0909049503024130
-
Adams PD, et al. (2004) Recent developments in the PHENIX software for automated crystallographic structure determination. J Synchrotron Radiat 11:53-55. (Pubitemid 40085633)
-
(2004)
Journal of Synchrotron Radiation
, vol.11
, Issue.1
, pp. 53-55
-
-
Adams, P.D.1
Gopal, K.2
Grosse-Kunstleve, R.W.3
Hung, L.-W.4
Ioerger, T.R.5
McCoy, A.J.6
Moriarty, N.W.7
Pai, R.K.8
Read, R.J.9
Romo, T.D.10
Sacchettini, J.C.11
Sauter, N.K.12
Storoni, L.C.13
Terwilliger, T.C.14
-
44
-
-
14244272868
-
PHENIX: Building new software for automated crystallographic structure determination
-
DOI 10.1107/S0907444902016657
-
Adams PD, et al. (2002) PHENIX: Building new software for automated crystallographic structure determination. Acta Crystallogr D 58:1948-1954. (Pubitemid 35337293)
-
(2002)
Acta Crystallographica Section D: Biological Crystallography
, vol.58
, Issue.11
, pp. 1948-1954
-
-
Adams, P.D.1
Grosse-Kunstleve, R.W.2
Hung, L.-W.3
Ioerger, T.R.4
McCoy, A.J.5
Moriarty, N.W.6
Read, R.J.7
Sacchettini, J.C.8
Sauter, N.K.9
Terwilliger, T.C.10
-
45
-
-
14844290215
-
Structures of complete RNA polymerase II and its subcomplex, Rpb4/7
-
DOI 10.1074/jbc.M413038200
-
Armache KJ, Mitterweger S, Meinhart A, Cramer P (2005) Structures of complete RNA polymerase II and its subcomplex, Rpb4/7. J Biol Chem 280:7131-7134. (Pubitemid 40341269)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.8
, pp. 7131-7134
-
-
Armache, K.-J.1
Mitterweger, S.2
Meinhart, A.3
Cramer, P.4
-
46
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
DOI 10.1093/nar/gkh340
-
Edgar RC (2004) MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797. (Pubitemid 38832724)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
|