Artificial protein complexes for biocatalysis

Topics in Catalysis

Volumn 55, Issue 16-18, 2012, Pages 1124-1137

  Hirakawa, Hidehiko ^a   Haga, Tomoaki ^a   Nagamune, Teruyuki ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

Cascade reaction; Chemoselective protein ligation; DNA scaffold; Multienzyme; Protein conjugation; Protein scaffold; Self assembly; Site specific

Indexed keywords

ARTIFICIAL PROTEINS; BIOCATALYSIS; BIOCHEMICAL REACTIONS; CASCADE REACTIONS; MACROMOLECULAR ORGANIZATION; MULTIENZYME; MULTIENZYME COMPLEXES; OVERALL EFFICIENCY; PROTEIN LIGATION; SELF-ASSEMBLING; SITE-SPECIFIC; SYNTHETIC PROTEIN;

ENZYMES; PROTEINS; SELF ASSEMBLY;

SCAFFOLDS (BIOLOGY);

EID: 84871851232     PISSN: 10225528     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11244-012-9900-5     Document Type: Conference Paper

References (109)

1. PlaxtonWC (1996)Annu Rev Plant Physiol PlantMol Biol 47:185
2. Thauer RK (1988) Eur J Biochem 176:497
3. Eisenreich W, Bacher A, Arigoni D, Rohdich F (2004) Cell Mol Life Sci 61:1401
4. McGarvey DJ, Croteau R (1995) Plant Cell 7:1015
5. Winkel-Shirley B (2001) Plant Physiol 126:485
6. Leibundgut M, Maier T, Jenni S, Ban N (2008) Curr Opin Struct Biol 18:714
7. Bruggink A, Schoevaart R, Kieboom T (2003) Org Process Res Dev 7:622
8. Ricca E, Brucher B, Schrittwieser JH (2011) Adv Synth Catal 353:2239
9. Santacoloma PA, Sin G, Gernaey KV, Woodley JM (2011) Org Process Res Dev 15:203
10. Chang TM (1985) Methods Enzymol 112:195
11. Lankin VZ, Tikhaze AK, Osis YG (2002) Biochemistry (Moscow) 67:566
12. Ichinose H, Michizoe J, Maruyama T, Kamiya N, Goto M (2004) Langmuir 20:5564
13. Michizoe J, Ichinose H, Kamiya N, Maruyama T, Goto M (2005) J Biosci Bioeng 99:12
14. Ryan JD, Clark DS (2008) Biotechnol Bioeng 99:1311
15. Matsumoto R, Kakuta M, Sugiyama T, Goto Y, Sakai H, Tokita Y, Hatazawa T, Tsujimura S, Shirai O, Kano K (2010) Phys Chem Chem Phys 12:13904
16. Vriezema DM, Garcia PML, Sancho Oltra N, Hatzakis NS, Kuiper SM, Nolte RJM, Rowan AE, van Hest JCM (2007) Angew Chem Int Ed 46:7378
17. Kreft O, Prevot M, Mohwald H, Sukhorukov GB (2007) Angew Chem Int Ed 46:5605
18. Qi W, Yan X, Duan L, Cui Y, Yang Y, Li J (2009) Biomacromolecules 10:1212
19. van Dongen SFM, Nallani M, Cornelissen JJLM, Nolte RJM, van Hest JCM (2009) Chem Eur J 15:1107
20. Jiang Y, Sun Q, Zhang L, Jiang Z (2009) J Mater Chem 19:9068
21. Shi J, Zhang L, Jiang Z (2011) ACS Appl Mater Interfaces 3:881
22. Zhang L, Shi J, Jiang Z, Jiang Y, Qiao S, Li J, Wang R, Meng R, Zhu Y, Zheng Y (2011) Green Chem 13:300
23. Grunewald J, Marahiel MA (2006) Microbiol Mol Biol Rev 70:121
24. Koglin A, Walsh CT (2009) Nat Prod Rep 26:987
25. Meier JL, Burkart MD (2009) Chem Soc Rev 38:2012
26. Staunton J, Weissman KJ (2001) Nat Prod Rep 18:380
27. Shen B (2003) Curr Opin Chem Biol 7:285
28. Maier T, Leibundgut M, Ban N (2008) Science 321:1315
29. Tong L (2005) Cell Mol Life Sci 62:1784
30. Miles EW, Rhee S, Davies DR (1999) J Biol Chem 274:12193
31. Dunn MF, Niks D, Ngo H, Barends TRM, Schlichting I (2008) Trends Biochem Sci 33:254
32. Thoden JB, Holden HM, Wesenberg G, Raushel FM, Rayment I (1997) Biochemistry 36:6305
33. Suss KH, Arkona C, Manteuffel R, Adler K (1993) Proc Natl Acad Sci USA 90:5514
34. Meyer FM, Gerwig J, Hammer E, Herzberg C, Commichau FM, Volker U, Stulke J (2011) Metab Eng 13:18
35. Nielsen KA, Tattersall DB, Jones PR, Møller BL (2008) Phytochemistry 69:88
36. Gilbert HJ (2007) Mol Microbiol 63:1568
37. Fontes CMGA, Gilbert HJ (2010) Annu Rev Biochem 79:655
38. Smolle M, Lindsay JG (2006) Biochem Soc Trans 34:815
39. Frank RAW, Pratap JV, Pei XY, Perham RN, Luisi BF (2005) Structure 13:1119
40. Bernhardt R (2006) J Biotechnol 124:128
41. Bulow L, Mosbach K (1991) Trend Biotechnol 9:226
42. De Mot R, Parret AHA (2002) Trends Microbiol 10:502
43. Lombard J, Moreira D (2011) BMC Evol Biol 11:232
44. Mateo C, Chmura A, Rustler S, van Rantwijk F, Stolz A, Sheldon RA (2006) Tetrahedron Asymmetry 17:320
45. van Pelt S, van Rantwijk F, Sheldon RA (2009) Adv Synth Catal 351:397
46. van de Velde F, Lourenço ND, Bakker M, van Rantwijk F, Sheldon RA (2000) Biotechnol Bioeng 69:286
47. El-Zahab B, Jia H, Wang P (2004) Biotechnol Bioeng 87:178
48. Keighron JD, Keating CD (2010) Langmuir 26:18992
49. Pantarotto D, Browne WR, Feringa BL (2008) ChemCommun 1533
50. Hackenberger CPR, Schwarzer D (2008) Angew Chem Int Ed 47:10030
51. Xu R, Ayers B, Cowburn D, Muir TW (1999) Proc Natl Acad Sci USA 96:388
52. Cotton GJ, Ayers B, Xu R, Muir TW (1999) J Am Chem Soc 121:1100
53. Blaschke U, Cotton GJ, Muir TW (2000) Tetrahedron 56:9461
54. Bundy BC, Swartz JR (2010) Bioconjugate Chem 21:255
55. Xiao J, Tolbert TJ (2009) Org Lett 11:4144
56. Weikart ND, Mootz HD (2010) ChemBioChem 11:774
57. Sommer S, Weikart ND, Brockmeyer A, Janning P, Mootz HD (2011) Angew Chem Int Ed 50:9888
58. Shi J, Muir TW (2005) J Am Chem Soc 127:6198
59. Zuger S, Iwai H (2005) Nat Biotechnol 23:736
60. Muona M, Aranko AS, Iwai H (2008) ChemBioChem 9:2958
61. Mao H, Hart SA, Schink A, Pollok BA (2004) J Am Chem Soc 126:2670
62. Tanaka T, Yamamoto T, Tsukiji S, Nagamune T (2008) ChemBioChem 9:802
63. Sakamoto T, Sawamoto S, Tanaka T, Fukuda H, Kondo A (2010) Bioconjugate Chem. 21:2227
64. Yamamura Y, Hirakawa H, Yamaguchi S, Nagamune T (2011) Chem Commun 47:4742
65. Matsumoto T, Sawamoto S, Sakamoto T, Tanaka T, Fukuda H, Kondo A (2011) J Biotechnol 152:37
66. Dasgupta S, Samantaray S, Sahal D, Roy RP (2011) J Biol Chem 286:23996
67. Mohlmann S, Mahlert C, Greven S, Scholz P, Harrenga A (2011) ChemBioChem 12:1774
68. Antos JM, Chew G-L, Guimaraes CP, Yoder NC, Grotenbreg GM, Popp MW-L, Ploegh HL (2009) J Am Chem Soc 131:10800
69. Yokoyama K, Nio N, Kikuchi Y (2004) Appl Microbiol Biotechnol 64:447
70. Kamiya N, Takazawa T, Tanaka T, Ueda H, Nagamune T (2003) Enzyme Microb Technol 33:492
71. Kamiya N, Tanaka T, Suzuki T, Takazawa T, Takeda S, Watanabe K, Nagamune T (2003) Bioconjugate Chem. 14:351
72. Takazawa T, Kamiya N, Ueda H, Nagamune T (2004) Biotechnol Bioeng 86:399
73. Tanaka T, Kamiya N, Nagamune T (2004) Bioconjugate Chem. 15:491
74. Tanaka T, Kamiya N, Nagamune T (2005) FEBS Lett 579:2092
75. Hirakawa H, Kamiya N, Tanaka T, Nagamune T (2007) Protein Eng Des Sel 20:453
76. Sibbesen O, De Voss JJ, de Montellano PRO (1996) J Biol Chem 271:22462
77. Lovrinovic M, Seidel R, Wacker R, Schroeder H, Seitz O, Engelhard M, Goody RS, Niemeyer CN (2003) Chem Commun 822
78. Takeda S, Tsukiji S, Nagamune T (2004) Bioorg Med Chem Lett 14:2407
79. Lovrinovic M, Spengler M, Deutsch C, Niemeyer CM (2005) Mol BioSyst 1:64
80. Burbulis I, Yamaguchi K, Gordon A, Carlson R, Brent R (2005) Nat Methods 2:31
81. Takeda S, Tsukiji S,Nagamune T (2005) Tetrahedron Lett 46:2235
82. Becker CFW, Wacker R, Bouschen W, Seidel R, Kolaric B, Lang P, Schroeder H, Muller O, Niemeyer CM, Spengler B, Goody RS, Engelhard M (2005) Angew Chem Int Ed 44:7635
83. Takeda S, Tsukiji S, Ueda H, Nagamune T (2008) Org Biomol Chem 6:2187
84. Jongsma MA, Litjens RHGM (2006) Proteomics 6:2650
85. Sacca B, Meyer R, Erkelenz M, Kiko K, Arndt A, Schroeder H, Rabe KS, Niemeyer CM (2010) Angew Chem Int Ed 49:9378
86. Tominaga J, Kemori Y, Tanaka Y, Maruyama T, Kamiya N, Goto M (2007) Chem Commun 401
87. Kitaoka M, Tsuruda Y, Tanaka Y, Goto M, Mitsumori M, Hayashi K, Hiraishi Y, Miyawaki K, Noji S, Kamiya N (2011) Chem Eur J 17:5387
88. Duckworth BP, Chen Y, Wollack JW, Sham Y, Mueller JD, Taton TA, Distefano MD (2007) Angew Chem Int Ed 46:8819
89. Pritz S, Wolf Y, Kraetke O, Klose J, Bienert M, Beyermann M (2007) J Org Chem 72:3909
90. Niemeyer CM, Koehler J, Wuerdemann C (2002) ChemBio-Chem 3:242
91. Muller J, Niemeyer CM (2008) Biochem Biophys Res Commun 377:62
92. Piperberg G, Wilner OI, Yehezkeli O, Tel-Vered R, Willner I (2009) J Am Chem Soc 131:8724
93. Tepper AWJW (2010) J Am Chem Soc 132:6550
94. Erkelenz M, Kuo C-H, Niemeyer CM (2011) J Am Chem Soc 133:16111
95. Wilner OI, Weizmann Y, Gill R, Lioubashevski O, Freeman R, Willner I (2009) Nat Nanotechnol 4:249
96. Good MC, Zalatan JG, Lim WA (2011) Science 332:680
97. Fierobe H-P, Mechaly A, Tardif C, Belaich A, Lamed R, Shoham Y, Bélaich J-P, Bayers EA (2001) J Biol Chem 276:21257
98. Fierobe H-P, Mingardon F, Mechaly A, Bélaich A, Rincon MT, Pages S, Lamed R, Tradif C, Bélaich J-P, Bayers EA (2005) J Biol Chem 280:16325
99. Morais S, Barak Y, Caspi J, Hadar Y, Lamed R, Shoham Y, Wilson DB, Bayer EA (2010) mBio 1:e00285-10. doi:10.1128/ mBio.00285-10
100. Dueber JE, Wu GC, Malmirchegini GR, Moon TS, Petzold CJ, Ullal AV, Prather KLJ, Keasling JD (2009) Nat Biotechnol 27:753
101. Moon TS, Dueber JE, Shiue E, Prather KLJ (2010) Metab Eng 12:298
102. Agapakis CM, Ducat DC, Boyle PM, Wintermute EH, Way JC, Silver PA (2010) J Biol Eng 4:3
103. Men D, Guo YC, Zhang ZP, Wei HP, Zhou YF, Cui ZQ, Liang XS, Li K, Leng Y, You XY, Zhang XE (2009) Nano Lett 9:2246
104. Leng Y, Wei HP, Zhang Z-P, Zhou Y-F, Deng J-Y, Cui Z-Q, Men D, You X-Y, Yu Z-N, Luo M, Zhang X-E (2010) Angew Chem Int Ed 49:7243
105. Heyman A, Levy I, Altman A, Shoseyov O (2007) Nano Lett 7:1575
106. Heyman A, Barak Y, Caspi J, Wilson DB, Altman A, Bayer EA, Shoseyov O (2007) J Biotechnol 131:433
107. Morais S, Heyman A, Barak Y, Caspi J, Wilson DB, Lamed R, Shoseyov O, Bayer EA (2010) J Biotechnol 147:205
108. Mitsuzawa S, Kagawa H, Li Y, Chan SL, Paavola CD, Trent JD (2009) J Biotechnol 143:139
109. Hirakawa H, Nagamune T (2010) ChemBioChem 11:1517