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Volumn 177, Issue , 2013, Pages 404-411

Label-free methylation specific sensor based on silicon microring resonators for detection and quantification of DNA methylation biomarkers in bladder cancer

Author keywords

Bladder cancer; Cancer biomarker; DNA methylation; Label free detection; Methylation specific sensor; Silicon microring resonator

Indexed keywords

BLADDER CANCERS; CANCER BIOMARKERS; DNA METHYLATION; LABEL-FREE DETECTION; MICRORING RESONATOR; SPECIFIC SENSORS;

EID: 84871817378     PISSN: 09254005     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.snb.2012.11.058     Document Type: Article
Times cited : (45)

References (40)
  • 2
    • 0020699979 scopus 로고
    • Hypomethylation distinguishes genes of some human cancers from their normal counterparts
    • DOI 10.1038/301089a0
    • A.P. Feinberg, and B. Vogelstein Hypomethylation distinguishes genes of some human cancers from their normal counterparts Nature 301 1983 89 92 (Pubitemid 13154475)
    • (1983) Nature , vol.301 , Issue.5895 , pp. 89-92
    • Feinberg, A.P.1    Vogelstein, B.2
  • 3
    • 0036753290 scopus 로고    scopus 로고
    • DNA methylation: A profile of methods and applications
    • M.F. Fraga, and M. Esteller DNA methylation: a profile of methods and applications Biotechniques 33 2002 632 649 (Pubitemid 35277569)
    • (2002) BioTechniques , vol.33 , Issue.3 , pp. 632-649
    • Fraga, M.F.1    Esteller, M.2
  • 4
    • 80053144962 scopus 로고    scopus 로고
    • A decade of exploring the cancer epigenome-biological and translational implications
    • S.B. Baylin, and P.A. Jones A decade of exploring the cancer epigenome-biological and translational implications Nature Reviews Cancer 11 2011 726 734
    • (2011) Nature Reviews Cancer , vol.11 , pp. 726-734
    • Baylin, S.B.1    Jones, P.A.2
  • 6
    • 3042638418 scopus 로고    scopus 로고
    • Molecular diagnostic applications of DNA methylation technology
    • DOI 10.1016/j.clinbiochem.2004.05.010, PII S0009912004001328
    • S.E. Cottrell Molecular diagnostic applications of DNA methlyation technology Clinical Biochemistry 37 2004 595 604 (Pubitemid 38845022)
    • (2004) Clinical Biochemistry , vol.37 , Issue.7 , pp. 595-604
    • Cottrell, S.E.1
  • 7
    • 27744443057 scopus 로고    scopus 로고
    • Methylated-CpG island recovery assay: A new technique for the rapid detection of methylated-CpG islands in cancer
    • DOI 10.1038/labinvest.3700311
    • T. Rauch, and G.P. Pfeifer Methylated-CpG island recovery assay: a new technique for the rapid detection of methylated-CpG islands in cancer Laboratory Investigation 85 2005 1172 1180 (Pubitemid 43073989)
    • (2005) Laboratory Investigation , vol.85 , Issue.9 , pp. 1172-1180
    • Rauch, T.1    Pfeifer, G.P.2
  • 8
    • 77956909524 scopus 로고    scopus 로고
    • Double recognition of oligonucleotide and protein in the detection of DNA methylation with surface plasmon resonance biosensors
    • S. Pan, J. Xu, Y. Shu, F. Wang, W. Xia, Q. Ding, T. Xu, C. Zhao, M. Zhang, P. Huang, and S. Lu Double recognition of oligonucleotide and protein in the detection of DNA methylation with surface plasmon resonance biosensors Biosensors and Bioelectronics 26 2010 850 853
    • (2010) Biosensors and Bioelectronics , vol.26 , pp. 850-853
    • Pan, S.1    Xu, J.2    Shu, Y.3    Wang, F.4    Xia, W.5    Ding, Q.6    Xu, T.7    Zhao, C.8    Zhang, M.9    Huang, P.10    Lu, S.11
  • 11
    • 0035866393 scopus 로고    scopus 로고
    • DNA fragments in the blood plasma of cancer patients: Quantitations and evidence for their origin from apoptotic and necrotic cells
    • S. Jahr, H. Hentze, S. Englisch, D. Hardt, F.O. Fackelmayer, R.D. Hesch, and R. Knippers DNA fragments in the blood plasma of cancer patients: quantitations and evidence for their origin from apoptotic and necrotic cells Cancer Research 61 2001 1659 1665 (Pubitemid 34292602)
    • (2001) Cancer Research , vol.61 , Issue.4 , pp. 1659-1665
    • Jahr, S.1    Hentze, H.2    Englisch, S.3    Hardt, D.4    Fackelmayer, F.O.5    Hesch, R.-D.6    Knippers, R.7
  • 12
    • 52249107130 scopus 로고    scopus 로고
    • Detection of mutated K-ras DNA in urine, plasma, serum of patients with colorectal carcinoma or adenomatous polyps
    • Y.H. Su, M. Wang, D.E. Brenner, P.A. Nortaon, and T.M. Block Detection of mutated K-ras DNA in urine, plasma, serum of patients with colorectal carcinoma or adenomatous polyps Annals of the New York Academy of Sciences 1137 2008 197 206
    • (2008) Annals of the New York Academy of Sciences , vol.1137 , pp. 197-206
    • Su, Y.H.1    Wang, M.2    Brenner, D.E.3    Nortaon, P.A.4    Block, T.M.5
  • 14
    • 34250209887 scopus 로고    scopus 로고
    • Silicon-on-Insulator microring resonator for sensitive and label-free biosensing
    • DOI 10.1364/OE.15.007610
    • K. De Vos, I. Bartolozzi, E. Schacht, P. Bienstman, and R. Baets Silicon-on-insulator microring resonator for sensitive and label-free biosensing Optics Express 15 2007 7610 7615 (Pubitemid 46906973)
    • (2007) Optics Express , vol.15 , Issue.12 , pp. 7610-7615
    • De Vos, K.1    Bartolozzi, I.2    Schacht, E.3    Bienstman, P.4    Baets, R.5
  • 15
    • 70649097388 scopus 로고    scopus 로고
    • Label-free quantitation of a cancer biomarker in complex media using silicon photonic microring resonators
    • A.L. Washburn, L.C. Gunn, and R.C. Bailey Label-free quantitation of a cancer biomarker in complex media using silicon photonic microring resonators Analytical Chemistry 81 2009 9499 9506
    • (2009) Analytical Chemistry , vol.81 , pp. 9499-9506
    • Washburn, A.L.1    Gunn, L.C.2    Bailey, R.C.3
  • 17
    • 77953923772 scopus 로고    scopus 로고
    • Multiplexed detection and label-free quantitation of microRNAs using arrays of silicon photonic microring resonators
    • in English
    • A.J. Qavi, and R.C. Bailey Multiplexed detection and label-free quantitation of microRNAs using arrays of silicon photonic microring resonators Angewandte Chemie International Edition 49 2010 4608 4611 in English
    • (2010) Angewandte Chemie International Edition , vol.49 , pp. 4608-4611
    • Qavi, A.J.1    Bailey, R.C.2
  • 18
    • 79960975346 scopus 로고    scopus 로고
    • Anti-DNA:RNA antibodies and silicon photonic microring resonators: Increased sensitivity for multiplexed microRNA detection
    • A.J. Qavi, J.T. Kindt, M.A. Gleeson, and R.C. Bailey Anti-DNA:RNA antibodies and silicon photonic microring resonators: increased sensitivity for multiplexed microRNA detection Analytical Chemistry 83 2011 5949 5956
    • (2011) Analytical Chemistry , vol.83 , pp. 5949-5956
    • Qavi, A.J.1    Kindt, J.T.2    Gleeson, M.A.3    Bailey, R.C.4
  • 19
    • 80052316722 scopus 로고    scopus 로고
    • Isothermal discrimination of single-nucleotide polymorphisms via real-time kinetic desorption and label-free detection of DNA using silicon photonic microring resonator arrays
    • A.J. Qavi, T.M. Mysz, and R.C. Bailey Isothermal discrimination of single-nucleotide polymorphisms via real-time kinetic desorption and label-free detection of DNA using silicon photonic microring resonator arrays Analytical Chemistry 83 2011 6827 6833
    • (2011) Analytical Chemistry , vol.83 , pp. 6827-6833
    • Qavi, A.J.1    Mysz, T.M.2    Bailey, R.C.3
  • 25
    • 70049088266 scopus 로고    scopus 로고
    • Interest of methylated genes as biomarkers in urothelial cell carcinomas of the urinary tract
    • V. Phe, O. Cussenot, and M. Roupret Interest of methylated genes as biomarkers in urothelial cell carcinomas of the urinary tract BJU International 104 2009 896 901
    • (2009) BJU International , vol.104 , pp. 896-901
    • Phe, V.1    Cussenot, O.2    Roupret, M.3
  • 26
    • 3042515471 scopus 로고    scopus 로고
    • DAP-kinase as a target for drug design in cancer and diseases associated with accelerated cell death
    • DOI 10.1016/j.semcancer.2004.04.008, PII S1044579X04000252
    • S. Bialik, and A. Kimchi DAP-kinase as a target for drug design in cancer and diseases associated with accelerated cell death Seminars in Cancer Biology 14 2004 283 294 (Pubitemid 38824589)
    • (2004) Seminars in Cancer Biology , vol.14 , Issue.4 , pp. 283-294
    • Bialik, S.1    Kimchi, A.2
  • 27
    • 0034692447 scopus 로고    scopus 로고
    • Hypermethylation of the death-associated protein (DAP) kinase promoter and aggressiveness in stage i non-small-cell lung cancer
    • X. Tang, F.R. Khuri, J.J. Lee, B.L. Kemp, D. Liu, W.K. Hong, and L. Mao Hypermethylation of the death-associated protein (DAP) kinase promoter and aggressiveness in stage I non-small-cell lung cancer Journal of the National Cancer Institute 92 2000 1511 1516
    • (2000) Journal of the National Cancer Institute , vol.92 , pp. 1511-1516
    • Tang, X.1    Khuri, F.R.2    Lee, J.J.3    Kemp, B.L.4    Liu, D.5    Hong, W.K.6    Mao, L.7
  • 28
    • 0034854116 scopus 로고    scopus 로고
    • Methylation of the E-cadherin gene in bladder neoplasia and in normal urothelial epithelium from elderly individuals
    • D.M. Bornman, S. Mathew, J. Alsruhe, J.G. Herman, and E. Gabrielson Methylation of the E-cadherin gene in bladder neoplasia and in normal urothelial epithelium from elderly individuals American Journal of Pathology 159 2001 831 835 (Pubitemid 32847174)
    • (2001) American Journal of Pathology , vol.159 , Issue.3 , pp. 831-835
    • Bornman, D.M.1    Mathew, S.2    Alsruhe, J.3    Herman, J.G.4    Gabrielson, E.5
  • 31
    • 58149131709 scopus 로고    scopus 로고
    • Effect of linker structure on surface density of aptamer monolayers and their corresponding protein binding efficiency
    • S. Balamurugan, A. Obubuafo, R.L. McCarley, S.A. Soper, and D.A. Spivak Effect of linker structure on surface density of aptamer monolayers and their corresponding protein binding efficiency Analytical Chemistry 80 2008 9630 9634
    • (2008) Analytical Chemistry , vol.80 , pp. 9630-9634
    • Balamurugan, S.1    Obubuafo, A.2    McCarley, R.L.3    Soper, S.A.4    Spivak, D.A.5
  • 33
    • 40249088354 scopus 로고    scopus 로고
    • A novel method to quantify local CpG methylation density by regional methylation elongation assay on microarray
    • D. Zhang, Y. Wang, Y. Bai, Q. Ge, Y. Qiao, J. Luo, C. Jia, and Z. Lu A novel method to quantify local CpG methylation density by regional methylation elongation assay on microarray BMC Genomics 9 2008 59 67
    • (2008) BMC Genomics , vol.9 , pp. 59-67
    • Zhang, D.1    Wang, Y.2    Bai, Y.3    Ge, Q.4    Qiao, Y.5    Luo, J.6    Jia, C.7    Lu, Z.8
  • 34
    • 0032839195 scopus 로고    scopus 로고
    • Detection of PCR products using self-probing amplicons and fluorescence
    • DOI 10.1038/11751
    • D. Whitcombe, J. Theaker, S.P. Guy, T. Brown, and S. Little Detection of PCR products using self-probing amplicons and fluorescence Nature Biotechnology 17 1999 804 807 (Pubitemid 29365111)
    • (1999) Nature Biotechnology , vol.17 , Issue.8 , pp. 804-807
    • Whitcombe, D.1    Theaker, J.2    Guy, S.P.3    Brown, T.4    Little, S.5
  • 35
    • 22044446964 scopus 로고    scopus 로고
    • Matching base-pair number dependence of the kinetics of DNA-DNA hybridization studied by surface plasmon fluorescence spectroscopy
    • DOI 10.1016/j.bios.2004.10.024, PII S0956566304005172
    • K. Tawa, D. Yao, and W. Knoll Matching base-pair number dependence of the kinetics of DNA-DNA hybridization studies by surface Plasmon fluorescence spectroscopy Biosensors and Bioelectronics 21 2005 322 329 (Pubitemid 40968085)
    • (2005) Biosensors and Bioelectronics , vol.21 , Issue.2 , pp. 322-329
    • Tawa, K.1    Yao, D.2    Knoll, W.3
  • 36
    • 0029655226 scopus 로고
    • A new approach to determine the effect of mismatches on kinetic parameters in DNA hybridization using an optical biosensor
    • M. Gotoh, Y. Hasegawa, Y. Shinohara, M. Shimizu, and M. Tosu A new approach to determine the effect of mismatches on kinetic parameters in DNA hybridization using an optical biosensor DNA Research 2 1995 285 293
    • (1995) DNA Research , vol.2 , pp. 285-293
    • Gotoh, M.1    Hasegawa, Y.2    Shinohara, Y.3    Shimizu, M.4    Tosu, M.5
  • 37
    • 59949104408 scopus 로고    scopus 로고
    • Label-free detection of DNA mutations by SPR: Application to the early detection of inherited breast cancer
    • L.G. Carrascosa, A. Calle, and L.M. Lechuga Label-free detection of DNA mutations by SPR: application to the early detection of inherited breast cancer Analytical and Bioanalytical Chemistry 393 2009 1173 1182
    • (2009) Analytical and Bioanalytical Chemistry , vol.393 , pp. 1173-1182
    • Carrascosa, L.G.1    Calle, A.2    Lechuga, L.M.3
  • 38
    • 38749101419 scopus 로고    scopus 로고
    • Label-free quantitative DNA detection using the liquid core optical ring resonator
    • DOI 10.1016/j.bios.2007.10.005, PII S0956566307004344
    • J.D. Suter, I.M. White, H. Zhu, H. Shi, C.W. Caldwell, and X. Fan Label-fee quantitative DNA detection using the liquid core optical ring resonator Biosensors and Bioelectronics 23 2008 1003 1009 (Pubitemid 351178707)
    • (2008) Biosensors and Bioelectronics , vol.23 , Issue.7 , pp. 1003-1009
    • Suter, J.D.1    White, I.M.2    Zhu, H.3    Shi, H.4    Caldwell, C.W.5    Fan, X.6
  • 39
    • 59749102842 scopus 로고    scopus 로고
    • Large temperature sensitivity of Sagnac loop interferometer based on the birefringent holey fiber filled with metal indium
    • B.H. Kim, S.H. Lee, A. Lin, C.-L. Lee, J. Lee, and W.T. Han Large temperature sensitivity of Sagnac loop interferometer based on the birefringent holey fiber filled with metal indium Optics Express 17 2009 1789 1794
    • (2009) Optics Express , vol.17 , pp. 1789-1794
    • Kim, B.H.1    Lee, S.H.2    Lin, A.3    Lee, C.-L.4    Lee, J.5    Han, W.T.6
  • 40
    • 0031281007 scopus 로고    scopus 로고
    • Thermal decay of fiber Bragg gratings of positive and negative index changes formed at 193 nm in a boron-codoped germanosilicate fiber
    • L. Dong, and W.F. Liu Thermal decay of fiber bragg gratings of positive and negative index changes formed at 193 nm in a boron-codoped germanosilicate fiber Applied Optics 36 1997 8222 8226 (Pubitemid 127688044)
    • (1997) Applied Optics , vol.36 , Issue.31 , pp. 8222-8226
    • Dong, L.1    Liu, W.F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.