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Volumn 9, Issue , 2008, Pages

A novel method to quantify local CpG methylation density by regional methylation elongation assay on microarray

Author keywords

[No Author keywords available]

Indexed keywords

CPG OLIGODEOXYNUCLEOTIDE; DNA; METHYLATED DNA PROTEIN CYSTEINE METHYLTRANSFERASE; PROTEIN MLH1; TAQ POLYMERASE; TELOMERASE REVERSE TRANSCRIPTASE; CARBOCYANINE; CYANINE DYE 3; DNA METHYLTRANSFERASE; FLUORESCENT DYE; MGMT PROTEIN, HUMAN; MLH1 PROTEIN, HUMAN; NUCLEAR PROTEIN; POLYDEOXYRIBONUCLEOTIDE SYNTHASE; SIGNAL TRANSDUCING ADAPTOR PROTEIN; TELOMERASE; TERT PROTEIN, HUMAN; TUMOR SUPPRESSOR PROTEIN; UNCLASSIFIED DRUG;

EID: 40249088354     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-9-59     Document Type: Article
Times cited : (13)

References (38)
  • 2
    • 0035962632 scopus 로고    scopus 로고
    • DNA methylation, chromatin inheritance, and cancer
    • 10.1038/sj.onc.1204339 11420732
    • Rountree MR Bachman KE Herman JG Baylin SB DNA methylation, chromatin inheritance, and cancer Oncogene 2001, 20(24):3156-3165 10.1038/ sj.onc.1204339 11420732
    • (2001) Oncogene , vol.20 , Issue.24 , pp. 3156-3165
    • Rountree, M.R.1    Bachman, K.E.2    Herman, J.G.3    Baylin, S.B.4
  • 3
    • 0035839057 scopus 로고    scopus 로고
    • The role of DNA methylation in mammalian epigenetics
    • 10.1126/science.1063852 11498573
    • Jones PA Takai D The role of DNA methylation in mammalian epigenetics Science 2001, 293(5532):1068-1070 10.1126/science.1063852 11498573
    • (2001) Science , vol.293 , Issue.5532 , pp. 1068-1070
    • Jones, P.A.1    Takai, D.2
  • 4
    • 0034176798 scopus 로고    scopus 로고
    • DNA hypermethylation in tumorigenesis: Epigenetics joins genetics
    • 10.1016/S0168-9525(99)01971-X 10729832
    • Baylin SB Herman JG DNA hypermethylation in tumorigenesis: Epigenetics joins genetics Trends Genet 2000, 16(4):168-174 10.1016/ S0168-9525(99)01971-X 10729832
    • (2000) Trends Genet , vol.16 , Issue.4 , pp. 168-174
    • Baylin, S.B.1    Herman, J.G.2
  • 5
    • 0032960181 scopus 로고    scopus 로고
    • Cancer epigenetics comes of age
    • 10.1038/5947 9988266
    • Jones PA Laird PW Cancer epigenetics comes of age Nature genetics 1999, 21(2):163-167 10.1038/5947 9988266
    • (1999) Nature Genetics , vol.21 , Issue.2 , pp. 163-167
    • Jones, P.A.1    Laird, P.W.2
  • 7
    • 32044461294 scopus 로고    scopus 로고
    • Multiplexed profiling of candidate genes for CpG island methylation status using a flexible PCR/LDR/Universal Array assay
    • 1361724 16369045 10.1101/gr.4181406
    • Cheng YW Shawber C Notterman D Paty P Barany F Multiplexed profiling of candidate genes for CpG island methylation status using a flexible PCR/ LDR/Universal Array assay Genome research 2006, 16(2):282-289 1361724 16369045 10.1101/gr.4181406
    • (2006) Genome Research , vol.16 , Issue.2 , pp. 282-289
    • Cheng, Y.W.1    Shawber, C.2    Notterman, D.3    Paty, P.4    Barany, F.5
  • 8
    • 2442699984 scopus 로고    scopus 로고
    • A DNA methylation pattern similar to normal tissue is associated with better prognosis in human cervical cancer
    • 10.1016/j.canlet.2003.12.016 15159026
    • Muller HM Widschwendter A Fiegl H Goebel G Wiedemair A Muller-Holzner E Marth C Widschwendter M A DNA methylation pattern similar to normal tissue is associated with better prognosis in human cervical cancer Cancer letters 2004, 209(2):231-236 10.1016/j.canlet.2003.12.016 15159026
    • (2004) Cancer Letters , vol.209 , Issue.2 , pp. 231-236
    • Muller, H.M.1    Widschwendter, A.2    Fiegl, H.3    Goebel, G.4    Wiedemair, A.5    Muller-Holzner, E.6    Marth, C.7    Widschwendter, M.8
  • 9
    • 0014936031 scopus 로고
    • Reaction of sodium bisulfite with uracil, cytosine, and their derivatives
    • 10.1021/bi00816a016 5459538
    • Hayatsu H Wataya Y Kai K Iida S Reaction of sodium bisulfite with uracil, cytosine, and their derivatives Biochemistry 1970, 9(14):2858-2865 10.1021/bi00816a016 5459538
    • (1970) Biochemistry , vol.9 , Issue.14 , pp. 2858-2865
    • Hayatsu, H.1    Wataya, Y.2    Kai, K.3    Iida, S.4
  • 12
    • 0036144753 scopus 로고    scopus 로고
    • Enzymatic regional methylation assay: A novel method to quantify regional CpG methylation density
    • 155259 11779840 10.1101/gr.202501
    • Galm O Rountree MR Bachman KE Jair KW Baylin SB Herman JG Enzymatic regional methylation assay: A novel method to quantify regional CpG methylation density Genome research 2002, 12(1):153-157 155259 11779840 10.1101/gr.202501
    • (2002) Genome Research , vol.12 , Issue.1 , pp. 153-157
    • Galm, O.1    Rountree, M.R.2    Bachman, K.E.3    Jair, K.W.4    Baylin, S.B.5    Herman, J.G.6
  • 13
    • 34247559653 scopus 로고    scopus 로고
    • Methods for detecting DNA methylation in tumors: From bench to bedside
    • 10.1016/j.canlet.2006.10.014 17166656
    • Shames DS Minna JD Gazdar AF Methods for detecting DNA methylation in tumors: From bench to bedside Cancer letters 2007, 251(2):187-198 10.1016/j.canlet.2006.10.014 17166656
    • (2007) Cancer Letters , vol.251 , Issue.2 , pp. 187-198
    • Shames, D.S.1    Minna, J.D.2    Gazdar, A.F.3
  • 15
    • 4444346815 scopus 로고    scopus 로고
    • De novo quantitative bisulfite sequencing using the pyrosequencing technology
    • 10.1016/j.ab.2004.05.007 15351288
    • Dupont JM Tost J Jammes H Gut IG De novo quantitative bisulfite sequencing using the pyrosequencing technology Analytical biochemistry 2004, 333(1):119-127 10.1016/j.ab.2004.05.007 15351288
    • (2004) Analytical Biochemistry , vol.333 , Issue.1 , pp. 119-127
    • Dupont, J.M.1    Tost, J.2    Jammes, H.3    Gut, I.G.4
  • 16
    • 0037444026 scopus 로고    scopus 로고
    • The affinity of different MBD proteins for a specific methylated locus depends on their intrinsic binding properties
    • 152853 12626718 10.1093/nar/gkg249
    • Fraga MF Ballestar E Montoya G Taysavang P Wade PA Esteller M The affinity of different MBD proteins for a specific methylated locus depends on their intrinsic binding properties Nucleic acids research 2003, 31(6):1765-1774 152853 12626718 10.1093/nar/gkg249
    • (2003) Nucleic Acids Research , vol.31 , Issue.6 , pp. 1765-1774
    • Fraga, M.F.1    Ballestar, E.2    Montoya, G.3    Taysavang, P.4    Wade, P.A.5    Esteller, M.6
  • 17
    • 33747096606 scopus 로고    scopus 로고
    • Engineering a high-affinity methyl-CpG-binding protein
    • 1540740 16893950 10.1093/nar/gkl527
    • Jorgensen HF Adie K Chaubert P Bird AP Engineering a high-affinity methyl-CpG-binding protein Nucleic acids research 2006, 34(13):e96 1540740 16893950 10.1093/nar/gkl527
    • (2006) Nucleic Acids Research , vol.34 , Issue.13
    • Jorgensen, H.F.1    Adie, K.2    Chaubert, P.3    Bird, A.P.4
  • 18
    • 9144246375 scopus 로고    scopus 로고
    • Comparative study of methyl-CpG-binding domain proteins
    • 149351 12529184 10.1186/1471-2164-4-1
    • Roloff TC Ropers HH Nuber UA Comparative study of methyl-CpG-binding domain proteins BMC genomics 2003, 4 (1):1 149351 12529184 10.1186/ 1471-2164-4-1
    • (2003) BMC Genomics , vol.4 , Issue.1 , pp. 1
    • Roloff, T.C.1    Ropers, H.H.2    Nuber, U.A.3
  • 20
    • 0036144883 scopus 로고    scopus 로고
    • Methylation-specific oligonucleotide microarray: A new potential for high-throughput methylation analysis
    • 155260 11779841 10.1101/gr.202801
    • Gitan RS Shi H Chen CM Yan PS Huang TH Methylation-specific oligonucleotide microarray: A new potential for high-throughput methylation analysis Genome research 2002, 12(1):158-164 155260 11779841 10.1101/gr.202801
    • (2002) Genome Research , vol.12 , Issue.1 , pp. 158-164
    • Gitan, R.S.1    Shi, H.2    Chen, C.M.3    Yan, P.S.4    Huang, T.H.5
  • 23
    • 0033047813 scopus 로고    scopus 로고
    • Methylation profiling of CpG islands in human breast cancer cells
    • 10.1093/hmg/8.3.459 9949205
    • Huang TH Perry MR Laux DE Methylation profiling of CpG islands in human breast cancer cells Human molecular genetics 1999, 8(3):459-470 10.1093/ hmg/8.3.459 9949205
    • (1999) Human Molecular Genetics , vol.8 , Issue.3 , pp. 459-470
    • Huang, T.H.1    Perry, M.R.2    Laux, D.E.3
  • 24
    • 23744484912 scopus 로고    scopus 로고
    • Profiling DNA methylation patterns using genomic tiling microarrays
    • 10.1038/nmeth0305-219 16163803
    • Lippman Z Gendrel AV Colot V Martienssen R Profiling DNA methylation patterns using genomic tiling microarrays Nature methods 2005, 2(3):219-224 10.1038/nmeth0305-219 16163803
    • (2005) Nature Methods , vol.2 , Issue.3 , pp. 219-224
    • Lippman, Z.1    Gendrel, A.V.2    Colot, V.3    Martienssen, R.4
  • 25
    • 0030697141 scopus 로고    scopus 로고
    • Detection and measurement of PCR bias in quantitative methylation analysis of bisulphite-treated DNA
    • 147052 9336479 10.1093/nar/25.21.4422
    • Warnecke PM Stirzaker C Melki JR Millar DS Paul CL Clark SJ Detection and measurement of PCR bias in quantitative methylation analysis of bisulphite-treated DNA Nucleic acids research 1997, 25(21):4422-4426 147052 9336479 10.1093/nar/25.21.4422
    • (1997) Nucleic Acids Research , vol.25 , Issue.21 , pp. 4422-4426
    • Warnecke, P.M.1    Stirzaker, C.2    Melki, J.R.3    Millar, D.S.4    Paul, C.L.5    Clark, S.J.6
  • 26
    • 0033533552 scopus 로고    scopus 로고
    • DNA methylation analysis using bisulfite treatment and PCR-single-strand conformation polymorphism in colorectal cancer showing microsatellite instability
    • 10.1006/bbrc.1999.1230
    • Maekawa M Sugano K Kashiwabara H Ushiama M Fujita S Yoshimori M Kakizoe T DNA methylation analysis using bisulfite treatment and PCR-single-strand conformation polymorphism in colorectal cancer showing microsatellite instability Biochemical and biophysical research communications 1999, 262(3):671-676 10.1006/bbrc.1999.1230
    • (1999) Biochemical and Biophysical Research Communications , vol.262 , Issue.3 , pp. 671-676
    • Maekawa, M.1    Sugano, K.2    Kashiwabara, H.3    Ushiama, M.4    Fujita, S.5    Yoshimori, M.6    Kakizoe, T.7
  • 27
    • 0033135049 scopus 로고    scopus 로고
    • Methylation of CpG in a small region of the hMLH1 promoter invariably correlates with the absence of gene expression
    • 10232580
    • Deng G Chen A Hong J Chae HS Kim YS Methylation of CpG in a small region of the hMLH1 promoter invariably correlates with the absence of gene expression Cancer research 1999, 59(9):2029-2033 10232580
    • (1999) Cancer Research , vol.59 , Issue.9 , pp. 2029-2033
    • Deng, G.1    Chen, A.2    Hong, J.3    Chae, H.S.4    Kim, Y.S.5
  • 28
    • 0033215453 scopus 로고    scopus 로고
    • p15(INK4B) CpG island methylation in primary acute leukemia is heterogeneous and suggests density as a critical factor for transcriptional silencing
    • 10498617
    • Cameron EE Baylin SB Herman JG p15(INK4B) CpG island methylation in primary acute leukemia is heterogeneous and suggests density as a critical factor for transcriptional silencing Blood 1999, 94(7):2445-2451 10498617
    • (1999) Blood , vol.94 , Issue.7 , pp. 2445-2451
    • Cameron, E.E.1    Baylin, S.B.2    Herman, J.G.3
  • 29
    • 0031735065 scopus 로고    scopus 로고
    • Selective variegated methylation of the p15 CpG island in acute myeloid leukemia
    • 10.1002/(SICI)1097-0215(19981123)78:5<561::AID-IJC6>3.0.CO;2-R
    • Dodge JE List AF Futscher BW Selective variegated methylation of the p15 CpG island in acute myeloid leukemia International journal of cancer 1998, 78(5):561-567 10.1002/ (SICI)1097-0215(19981123)78:5<561::AID-IJC6>3.0.CO;2-R
    • (1998) International Journal of Cancer , vol.78 , Issue.5 , pp. 561-567
    • Dodge, J.E.1    List, A.F.2    Futscher, B.W.3
  • 30
    • 0028106737 scopus 로고
    • Dependence of transcriptional repression on CpG methylation density
    • Hsieh CL Dependence of transcriptional repression on CpG methylation density Molecular and cellular biology 1994, 14(8):5487-5494
    • (1994) Molecular and Cellular Biology , vol.14 , Issue.8 , pp. 5487-5494
    • Hsieh, C.L.1
  • 33
    • 0032770313 scopus 로고    scopus 로고
    • Progressive region-specific de novo methylation of the p16 CpG island in primary human mammary epithelial cell strains during escape from M(0) growth arrest
    • Wong DJ Foster SA Galloway DA Reid BJ Progressive region-specific de novo methylation of the p16 CpG island in primary human mammary epithelial cell strains during escape from M(0) growth arrest Molecular and cellular biology 1999, 19(8):5642-5651
    • (1999) Molecular and Cellular Biology , vol.19 , Issue.8 , pp. 5642-5651
    • Wong, D.J.1    Foster, S.A.2    Galloway, D.A.3    Reid, B.J.4
  • 34
    • 0035799382 scopus 로고    scopus 로고
    • Changes in DNA methylation in neoplasia: Pathophysiology and therapeutic implications
    • 11281740
    • Santini V Kantarjian HM Issa JP Changes in DNA methylation in neoplasia: pathophysiology and therapeutic implications Annals of internal medicine 2001, 134(7):573-586 11281740
    • (2001) Annals of Internal Medicine , vol.134 , Issue.7 , pp. 573-586
    • Santini, V.1    Kantarjian, H.M.2    Issa, J.P.3
  • 35
    • 0028961759 scopus 로고
    • A bisulfite method of 5-methylcytosine mapping that minimizes template degradation
    • 10.1006/abio.1995.1204 7785768
    • Raizis AM Schmitt F Jost JP A bisulfite method of 5-methylcytosine mapping that minimizes template degradation Analytical biochemistry 1995, 226(1):161-166 10.1006/abio.1995.1204 7785768
    • (1995) Analytical Biochemistry , vol.226 , Issue.1 , pp. 161-166
    • Raizis, A.M.1    Schmitt, F.2    Jost, J.P.3
  • 36
    • 13244276338 scopus 로고    scopus 로고
    • A methylation sensitive dot blot assay (MS-DBA) for the quantitative analysis of DNA methylation in clinical samples
    • 1770569 15677535 10.1136/jcp.2004.021147
    • Clement G Benhattar J A methylation sensitive dot blot assay (MS-DBA) for the quantitative analysis of DNA methylation in clinical samples Journal of clinical pathology 2005, 58(2):155-158 1770569 15677535 10.1136/jcp.2004.021147
    • (2005) Journal of Clinical Pathology , vol.58 , Issue.2 , pp. 155-158
    • Clement, G.1    Benhattar, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.