-
1
-
-
4544276433
-
APC/C and SCF: Controlling each other and the cell cycle
-
Vodermaier, H. C. (2004) APC/C and SCF: controlling each other and the cell cycle. Curr. Biol. 14, R787-R796
-
(2004)
Curr. Biol.
, vol.14
-
-
Vodermaier, H.C.1
-
2
-
-
2342447397
-
The ubiquitin ligase COP1 is a critical negative regulator of p53
-
DOI 10.1038/nature02514
-
Dornan, D., Wertz, I., Shimizu, H., Arnott, D., Frantz, G. D., Dowd, P., O'Rourke, K., Koeppen, H., and Dixit, V. M. (2004) The ubiquitin ligase COP1 is a critical negative regulator of p53. Nature 429, 86-92 (Pubitemid 38620556)
-
(2004)
Nature
, vol.429
, Issue.6987
, pp. 86-92
-
-
Dornan, D.1
Wertz, I.2
Shimizu, H.3
Arnott, D.4
Frantz, G.D.5
Dowd, P.6
O'Rourke, K.7
Koeppen, H.8
Dixit, V.M.9
-
3
-
-
39049159657
-
Drosophila cbl is essential for control of cell death and cell differentiation during eye development
-
Wang, Y., Werz, C., Xu, D., Chen, Z., Li, Y., Hafen, E., and Bergmann, A. (2008) Drosophila cbl is essential for control of cell death and cell differentiation during eye development. PLoS One 3, e1447
-
(2008)
PLoS One
, vol.3
-
-
Wang, Y.1
Werz, C.2
Xu, D.3
Chen, Z.4
Li, Y.5
Hafen, E.6
Bergmann, A.7
-
4
-
-
0038015609
-
Control of protein degradation by E3 ubiquitin ligases in Drosophila eye development
-
DOI 10.1016/S0168-9525(03)00146-X
-
Ou, C. Y., Pi, H., and Chien, C. T. (2003) Control of protein degradation by E3 ubiquitin ligases in Drosophila eye development. Trends Genet. 19, 382-389 (Pubitemid 36794540)
-
(2003)
Trends in Genetics
, vol.19
, Issue.7
, pp. 382-389
-
-
Ou, C.-Y.1
Pi, H.2
Chien, C.-T.3
-
5
-
-
0037123605
-
Emerging roles of ubiquitin in transcription regulation
-
DOI 10.1126/science.1067466
-
Conaway, R. C., Brower, C. S., and Conaway, J. W. (2002) Emerging roles of ubiquitin in transcription regulation. Science 296, 1254-1258 (Pubitemid 34522769)
-
(2002)
Science
, vol.296
, Issue.5571
, pp. 1254-1258
-
-
Conaway, R.C.1
Brower, C.S.2
Conaway, J.W.3
-
6
-
-
78650100616
-
Ubiquitin: Same molecule, different degradation pathways
-
Clague, M. J., and Urbé, S. (2010) Ubiquitin: same molecule, different degradation pathways. Cell 143, 682-685
-
(2010)
Cell
, vol.143
, pp. 682-685
-
-
Clague, M.J.1
Urbé, S.2
-
8
-
-
0030457014
-
Ubiquitin-dependent protein degradation
-
Hochstrasser, M. (1996) Ubiquitin-dependent protein degradation. Annu. Rev. Genet. 30, 405-439
-
(1996)
Annu. Rev. Genet.
, vol.30
, pp. 405-439
-
-
Hochstrasser, M.1
-
9
-
-
30344482590
-
Lingering mysteries of ubiquitin-chain assembly
-
Hochstrasser, M. (2006) Lingering mysteries of ubiquitin-chain assembly. Cell 124, 27-34
-
(2006)
Cell
, vol.124
, pp. 27-34
-
-
Hochstrasser, M.1
-
10
-
-
33749346301
-
Modification of proteins by ubiquitin and ubiquitin-like proteins
-
Kerscher, O., Felberbaum, R., and Hochstrasser, M. (2006) Modification of proteins by ubiquitin and ubiquitin-like proteins. Annu. Rev. Cell Dev. Biol. 22, 159-180
-
(2006)
Annu. Rev. Cell Dev. Biol.
, vol.22
, pp. 159-180
-
-
Kerscher, O.1
Felberbaum, R.2
Hochstrasser, M.3
-
11
-
-
0842303313
-
Back to the future with ubiquitin
-
Pickart, C. M. (2004) Back to the future with ubiquitin. Cell 116, 181-190
-
(2004)
Cell
, vol.116
, pp. 181-190
-
-
Pickart, C.M.1
-
12
-
-
33847056330
-
Crystal Structure and Solution NMR Studies of Lys48-linked Tetraubiquitin at Neutral pH
-
DOI 10.1016/j.jmb.2006.12.065, PII S0022283606017554
-
Eddins, M. J., Varadan, R., Fushman, D., Pickart, C. M., and Wolberger, C. (2007) Crystal structure and solution NMR studies of Lys48-linked tetraubiquitin at neutral pH. J. Mol. Biol. 367, 204-211 (Pubitemid 46274722)
-
(2007)
Journal of Molecular Biology
, vol.367
, Issue.1
, pp. 204-211
-
-
Eddins, M.J.1
Varadan, R.2
Fushman, D.3
Pickart, C.M.4
Wolberger, C.5
-
13
-
-
0036922992
-
Structural properties of polyubiquitin chains in solution
-
DOI 10.1016/S0022-2836(02)01198-1
-
Varadan, R., Walker, O., Pickart, C., and Fushman, D. (2002) Structural properties of polyubiquitin chains in solution. J. Mol. Biol. 324, 637-647 (Pubitemid 36044103)
-
(2002)
Journal of Molecular Biology
, vol.324
, Issue.4
, pp. 637-647
-
-
Varadan, R.1
Walker, O.2
Pickart, C.3
Fushman, D.4
-
14
-
-
1342304089
-
63-linked Di-ubiquitin Chain Provides Clues to Functional Diversity of Polyubiquitin Signaling
-
DOI 10.1074/jbc.M309184200
-
Varadan, R., Assfalg, M., Haririnia, A., Raasi, S., Pickart, C., and Fushman, D. (2004) Solution conformation of Lys63-linked di-ubiquitin chain provides clues to functional diversity of polyubiquitin signaling. J. Biol. Chem. 279, 7055-7063 (Pubitemid 38248851)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.8
, pp. 7055-7063
-
-
Varadan, R.1
Assfalg, M.2
Haririnia, A.3
Raasi, S.4
Pickart, C.5
Fushman, D.6
-
15
-
-
46049116842
-
Lost to translation: When autophagy targets mature ribosomes
-
Beau, I., Esclatine, A., and Codogno, P. (2008) Lost to translation: when autophagy targets mature ribosomes. Trends Cell Biol. 18, 311-314
-
(2008)
Trends Cell Biol.
, vol.18
, pp. 311-314
-
-
Beau, I.1
Esclatine, A.2
Codogno, P.3
-
16
-
-
14444281159
-
Targeted expression of MDM2 uncouples S phase from mitosis and inhibits mammary gland development independent of p53
-
Lundgren, K., Montes de Oca Luna, R., McNeill, Y. B., Emerick, E. P., Spencer, B., Barfield, C. R., Lozano, G., Rosenberg, M. P., and Finlay, C. A. (1997) Targeted expression of MDM2 uncouples S phase from mitosis and inhibits mammary gland development independent of p53. Genes Dev. 11, 714-725 (Pubitemid 27157160)
-
(1997)
Genes and Development
, vol.11
, Issue.6
, pp. 714-725
-
-
Lundgren, K.1
Montes, D.O.L.R.2
McNeill, Y.B.3
Emerick, E.P.4
Spencer, B.5
Barfield, C.R.6
Lozano, G.7
Rosenberg, M.P.8
Finlay, C.A.9
-
17
-
-
0033525582
-
Noncanonical MMS2-encoded ubiquitin-conjugating enzyme functions in assembly of novel polyubiquitin chains for DNA repair
-
Hofmann, R. M., and Pickart, C. M. (1999) Noncanonical MMS2-encoded ubiquitin-conjugating enzyme functions in assembly of novel polyubiquitin chains for DNA repair. Cell 96, 645-653 (Pubitemid 29122807)
-
(1999)
Cell
, vol.96
, Issue.5
, pp. 645-653
-
-
Hofmann, R.M.1
Pickart, C.M.2
-
18
-
-
36749069564
-
Conservation of DNA damage tolerance pathways from yeast to humans
-
Ulrich, H. D. (2007) Conservation of DNA damage tolerance pathways from yeast to humans. Biochem. Soc. Trans. 35, 1334-1337
-
(2007)
Biochem. Soc. Trans.
, vol.35
, pp. 1334-1337
-
-
Ulrich, H.D.1
-
19
-
-
0032567528
-
Crystal structure of the human ubiquitin-like protein NEDD8 and interactions with ubiquitin pathway enzymes
-
DOI 10.1074/jbc.273.52.34983
-
Whitby, F. G., Xia, G., Pickart, C. M., and Hill, C. P. (1998) Crystal structure of the human ubiquitin-like protein NEDD8 and interactions with ubiquitin pathway enzymes. J. Biol. Chem. 273, 34983-34991 (Pubitemid 29028197)
-
(1998)
Journal of Biological Chemistry
, vol.273
, Issue.52
, pp. 34983-34991
-
-
Whitby, F.G.1
Xia, G.2
Pickart, C.M.3
Hill, C.P.4
-
20
-
-
70349994091
-
60th residues of ubiquitin and Nedd8 are located out of E2-binding surfaces, but are important for K48 ubiquitin-linkage
-
Choi, Y. S., Jeon, Y. H., Ryu, K. S., and Cheong, C. (2009) 60th residues of ubiquitin and Nedd8 are located out of E2-binding surfaces, but are important for K48 ubiquitin-linkage. FEBS Lett. 583, 3323-3328
-
(2009)
FEBS Lett.
, vol.583
, pp. 3323-3328
-
-
Choi, Y.S.1
Jeon, Y.H.2
Ryu, K.S.3
Cheong, C.4
-
21
-
-
0032567404
-
The rub family of ubiquitin-like proteins: Crystal structure of arabidopsis RUB1 and expression of multiple rubs in arabidopsis
-
DOI 10.1074/jbc.273.52.34976
-
Rao-Naik, C., delaCruz, W., Laplaza, J. M., Tan, S., Callis, J., and Fisher, A. J. (1998) The rub family of ubiquitin-like proteins. Crystal structure of Arabidopsis rub1 and expression of multiple rubs in Arabidopsis. J. Biol. Chem. 273, 34976-34982 (Pubitemid 29028196)
-
(1998)
Journal of Biological Chemistry
, vol.273
, Issue.52
, pp. 34976-34982
-
-
Rao-Naik, C.1
DelaCruz, W.2
Laplaza, J.M.3
Tan, S.4
Callis, J.5
Fisher, A.J.6
-
22
-
-
0034725918
-
Biochemistry. All in the ubiquitin family
-
Hochstrasser, M. (2000) Biochemistry. All in the ubiquitin family. Science 289, 563-564
-
(2000)
Science
, vol.289
, pp. 563-564
-
-
Hochstrasser, M.1
-
23
-
-
0032522382
-
A novel protein modification pathway related to the ubiquitin system
-
DOI 10.1093/emboj/17.8.2208
-
Liakopoulos, D., Doenges, G., Matuschewski, K., and Jentsch, S. (1998) A novel protein modification pathway related to the ubiquitin system. EMBO J. 17, 2208-2214 (Pubitemid 28171906)
-
(1998)
EMBO Journal
, vol.17
, Issue.8
, pp. 2208-2214
-
-
Liakopoulos, D.1
Doenges, G.2
Matuschewski, K.3
Jentsch, S.4
-
24
-
-
4744338840
-
A unique E1-E2 interaction required for optimal conjugation of the ubiquitin-like protein NEDD8
-
DOI 10.1038/nsmb826
-
Huang, D. T., Miller, D. W., Mathew, R., Cassell, R., Holton, J. M., Roussel, M. F., and Schulman, B. A. (2004) A unique E1-E2 interaction required for optimal conjugation of the ubiquitin-like protein NEDD8. Nat. Struct. Mol. Biol. 11, 927-935 (Pubitemid 39315295)
-
(2004)
Nature Structural and Molecular Biology
, vol.11
, Issue.10
, pp. 927-935
-
-
Huang, D.T.1
Miller, D.W.2
Mathew, R.3
Cassell, R.4
Holton, J.M.5
Roussel, M.F.6
Schulman, B.A.7
-
25
-
-
13244249669
-
Structural basis for recruitment of Ubc12 by an E2 binding domain in NEDD8's E1
-
DOI 10.1016/j.molcel.2004.12.020, PII S1097276505010026
-
Huang, D. T., Paydar, A., Zhuang, M., Waddell, M. B., Holton, J. M., and Schulman, B. A. (2005) Structural basis for recruitment of Ubc12 by an E2 binding domain in NEDD8's E1. Mol. Cell 17, 341-350 (Pubitemid 40193306)
-
(2005)
Molecular Cell
, vol.17
, Issue.3
, pp. 341-350
-
-
Huang, D.T.1
Paydar, A.2
Zhuang, M.3
Waddell, M.B.4
Holton, J.M.5
Schulman, B.A.6
-
26
-
-
0033581899
-
Covalent modification of all members of human cullin family proteins by NEDD8
-
Hori, T., Osaka, F., Chiba, T., Miyamoto, C., Okabayashi, K., Shimbara, N., Kato, S., and Tanaka, K. (1999) Covalent modification of all members of human cullin family proteins by NEDD8. Oncogene 18, 6829-6834
-
(1999)
Oncogene
, vol.18
, pp. 6829-6834
-
-
Hori, T.1
Osaka, F.2
Chiba, T.3
Miyamoto, C.4
Okabayashi, K.5
Shimbara, N.6
Kato, S.7
Tanaka, K.8
-
27
-
-
53249154203
-
Function and regulation of protein neddylation. 'Protein modifications: Beyond the usual suspects' review series
-
Rabut, G., and Peter, M. (2008) Function and regulation of protein neddylation. 'Protein modifications: beyond the usual suspects' review series. EMBO Rep. 9, 969-976
-
(2008)
EMBO Rep.
, vol.9
, pp. 969-976
-
-
Rabut, G.1
Peter, M.2
-
28
-
-
70349339322
-
Regulation of cullin-RING E3 ubiquitin-ligases by neddylation and dimerization
-
Merlet, J., Burger, J., Gomes, J. E., and Pintard, L. (2009) Regulation of cullin-RING E3 ubiquitin-ligases by neddylation and dimerization. Cell Mol. Life Sci. 66, 1924-1938
-
(2009)
Cell Mol. Life Sci.
, vol.66
, pp. 1924-1938
-
-
Merlet, J.1
Burger, J.2
Gomes, J.E.3
Pintard, L.4
-
29
-
-
3142611072
-
Neddylating the guardian; Mdm2 catalyzed conjugation of Nedd8 to p53
-
Harper, J. (2004) Neddylating the guardian; Mdm2 catalyzed conjugation of Nedd8 to p53. Cell 118, 2-4
-
(2004)
Cell
, vol.118
, pp. 2-4
-
-
Harper, J.1
-
30
-
-
3142570737
-
Mdm2-mediated NEDD8 conjugation of p53 inhibits its transcriptional activity
-
DOI 10.1016/j.cell.2004.06.016, PII S0092867404005859
-
Xirodimas, D. P., Saville, M. K., Bourdon, J. C., Hay, R. T., and Lane, D. P. (2004) Mdm2-mediated NEDD8 conjugation of p53 inhibits its transcriptional activity. Cell 118, 83-97 (Pubitemid 38902816)
-
(2004)
Cell
, vol.118
, Issue.1
, pp. 83-97
-
-
Xirodimas, D.P.1
Saville, M.K.2
Bourdon, J.-C.3
Hay, R.T.4
Lane, D.P.5
-
31
-
-
33847328747
-
FBXO11 promotes the neddylation of p53 and inhibits its transcriptional activity
-
DOI 10.1074/jbc.M609001200
-
Abida, W. M., Nikolaev, A., Zhao, W., Zhang, W., and Gu, W. (2007) FBXO11 promotes the Neddylation of p53 and inhibits its transcriptional activity. J. Biol. Chem. 282, 1797-1804 (Pubitemid 47076687)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.3
, pp. 1797-1804
-
-
Abida, W.M.1
Nikolaev, A.2
Zhao, W.3
Zhang, W.4
Gu, W.5
-
32
-
-
33845920314
-
Mdm2-mediated NEDD8 modification of TAp73 regulates its transactivation function
-
DOI 10.1074/jbc.M603654200
-
Watson, I. R., Blanch, A., Lin, D. C., Ohh, M., and Irwin, M. S. (2006) Mdm2-mediated NEDD8 modification of TAp73 regulates its transactivation function. J. Biol. Chem. 281, 34096-34103 (Pubitemid 46036618)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.45
, pp. 34096-34103
-
-
Watson, I.R.1
Blanch, A.2
Lin, D.C.C.3
Ohh, M.4
Irwin, M.S.5
-
33
-
-
40249111681
-
Ribosomal proteins are targets for the NEDD8 pathway
-
DOI 10.1038/embor.2008.10, PII EMBOR200810
-
Xirodimas, D. P., Sundqvist, A., Nakamura, A., Shen, L., Botting, C., and Hay, R. T. (2008) Ribosomal proteins are targets for the NEDD8 pathway. EMBO Rep. 9, 280-286 (Pubitemid 351330994)
-
(2008)
EMBO Reports
, vol.9
, Issue.3
, pp. 280-286
-
-
Xirodimas, D.P.1
Sundqvist, A.2
Nakamura, A.3
Shen, L.4
Botting, C.5
Hay, R.T.6
-
34
-
-
70449697971
-
Regulation of nucleolar signalling to p53 through NEDDylation of L11
-
Sundqvist, A., Liu, G., Mirsaliotis, A., and Xirodimas, D. P. (2009) Regulation of nucleolar signalling to p53 through NEDDylation of L11. EMBO Rep. 10, 1132-1139
-
(2009)
EMBO Rep.
, vol.10
, pp. 1132-1139
-
-
Sundqvist, A.1
Liu, G.2
Mirsaliotis, A.3
Xirodimas, D.P.4
-
35
-
-
33746797288
-
Conjugation to Nedd8 instigates ubiquitylation and down-regulation of activated receptor tyrosine kinases
-
DOI 10.1074/jbc.M513034200
-
Oved, S., Mosesson, Y., Zwang, Y., Santonico, E., Shtiegman, K., Marmor, M. D., Kochupurakkal, B. S., Katz, M., Lavi, S., Cesareni, G., and Yarden, Y. (2006) Conjugation to Nedd8 instigates ubiquitylation and down-regulation of activated receptor tyrosine kinases. J. Biol. Chem. 281, 21640-21651 (Pubitemid 44181867)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.31
, pp. 21640-21651
-
-
Oved, S.1
Mosesson, Y.2
Zwang, Y.3
Santonico, E.4
Shtiegman, K.5
Marmor, M.D.6
Kochupurakkal, B.S.7
Katz, M.8
Lavi, S.9
Cesareni, G.10
Yarden, Y.11
-
36
-
-
78649980427
-
Systematic in vivo RNAi analysis identifies IAPs as NEDD8-E3 ligases
-
Broemer, M., Tenev, T., Rigbolt, K. T., Hempel, S., Blagoev, B., Silke, J., Ditzel, M., and Meier, P. (2010) Systematic in vivo RNAi analysis identifies IAPs as NEDD8-E3 ligases. Mol. Cell 40, 810-822
-
(2010)
Mol. Cell
, vol.40
, pp. 810-822
-
-
Broemer, M.1
Tenev, T.2
Rigbolt, K.T.3
Hempel, S.4
Blagoev, B.5
Silke, J.6
Ditzel, M.7
Meier, P.8
-
37
-
-
78649919202
-
Another tier for caspase regulation: IAPs as NEDD8 E3 ligases
-
Benjamin, S., and Steller, H. (2010) Another tier for caspase regulation: IAPs as NEDD8 E3 ligases. Dev. Cell 19, 791-792
-
(2010)
Dev. Cell
, vol.19
, pp. 791-792
-
-
Benjamin, S.1
Steller, H.2
-
38
-
-
84862829058
-
Neddylation positively regulates the ubiquitin E3 ligase activity of parkin
-
Um, J. W., Han, K. A., Im, E., Oh, Y., Lee, K., and Chung, K. C. (2012) Neddylation positively regulates the ubiquitin E3 ligase activity of parkin. J. Neurosci. Res. 90, 1030-1042
-
(2012)
J. Neurosci. Res.
, vol.90
, pp. 1030-1042
-
-
Um, J.W.1
Han, K.A.2
Im, E.3
Oh, Y.4
Lee, K.5
Chung, K.C.6
-
39
-
-
84861117544
-
Regulation of parkin and PINK1 by neddylation
-
Choo, Y. S., Vogler, G., Wang, D., Kalvakuri, S., Iliuk, A., Tao, W. A., Bodmer, R., and Zhang, Z. (2012) Regulation of parkin and PINK1 by neddylation. Hum. Mol. Genet. 21, 2514-2523
-
(2012)
Hum. Mol. Genet.
, vol.21
, pp. 2514-2523
-
-
Choo, Y.S.1
Vogler, G.2
Wang, D.3
Kalvakuri, S.4
Iliuk, A.5
Tao, W.A.6
Bodmer, R.7
Zhang, Z.8
-
40
-
-
84858724149
-
The ubiquitin E1 enzyme Ube1 mediates NEDD8 activation under diverse stress conditions
-
Leidecker, O., Matic, I., Mahata, B., Pion, E., and Xirodimas, D. P. (2012) The ubiquitin E1 enzyme Ube1 mediates NEDD8 activation under diverse stress conditions. Cell Cycle 11, 1142-1150
-
(2012)
Cell Cycle
, vol.11
, pp. 1142-1150
-
-
Leidecker, O.1
Matic, I.2
Mahata, B.3
Pion, E.4
Xirodimas, D.P.5
-
41
-
-
84860323764
-
Stress, specificity and the NEDD8 proteome
-
Lane, D. P. (2012) Stress, specificity and the NEDD8 proteome. Cell Cycle 11, 1488-1489
-
(2012)
Cell Cycle
, vol.11
, pp. 1488-1489
-
-
Lane, D.P.1
-
42
-
-
84860376787
-
Rpn1 and rpn2 coordinate ubiquitin processing factors at proteasome
-
Rosenzweig, R., Bronner, V., Zhang, D., Fushman, D., and Glickman, M. H. (2012) Rpn1 and rpn2 coordinate ubiquitin processing factors at proteasome. J. Biol. Chem. 287, 14659-14671
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 14659-14671
-
-
Rosenzweig, R.1
Bronner, V.2
Zhang, D.3
Fushman, D.4
Glickman, M.H.5
-
43
-
-
34249711818
-
Hetero-oligomerization with MdmX rescues the ubiquitin/Nedd8 ligase activity of RING finger mutants of Mdm2
-
DOI 10.1074/jbc.M610879200
-
Singh, R. K., Iyappan, S., and Scheffner, M. (2007) Hetero- oligomerization with MdmX rescues the ubiquitin/Nedd8 ligase activity of RING finger mutants of Mdm2. J. Biol. Chem. 282, 10901-10907 (Pubitemid 47100746)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.15
, pp. 10901-10907
-
-
Singh, R.K.1
Iyappan, S.2
Scheffner, M.3
-
44
-
-
0033003335
-
Protein backbone angle restraints from searching a database for chemical shift and sequence homology
-
DOI 10.1023/A:1008392405740
-
Cornilescu, G., Delaglio, F., and Bax, A. (1999) Protein backbone angle restraints from searching a database for chemical shift and sequence homology. J. Biomol. NMR 13, 289-302 (Pubitemid 29143535)
-
(1999)
Journal of Biomolecular NMR
, vol.13
, Issue.3
, pp. 289-302
-
-
Cornilescu, G.1
Delaglio, F.2
Bax, A.3
-
45
-
-
42449146665
-
Consistent blind protein structure generation from NMR chemical shift data
-
DOI 10.1073/pnas.0800256105
-
Shen, Y., Lange, O., Delaglio, F., Rossi, P., Aramini, J. M., Liu, G., Eletsky, A., Wu, Y., Singarapu, K. K., Lemak, A., Ignatchenko, A., Arrowsmith, C. H., Szyperski, T., Montelione, G. T., Baker, D., and Bax, A. (2008) Consistent blind protein structure generation from NMR chemical shift data. Proc. Natl. Acad. Sci. U.S.A. 105, 4685-4690 (Pubitemid 351753807)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.12
, pp. 4685-4690
-
-
Shen, Y.1
Lange, O.2
Delaglio, F.3
Rossi, P.4
Aramini, J.M.5
Liu, G.6
Eletsky, A.7
Wu, Y.8
Singarapu, K.K.9
Lemak, A.10
Ignatchenko, A.11
Arrowsmith, C.H.12
Szyperski, T.13
Montelione, G.T.14
Baker, D.15
Bax, A.16
-
46
-
-
76749107198
-
De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds
-
Shen, Y., Bryan, P. N., He, Y., Orban, J., Baker, D., and Bax, A. (2010) De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds. Protein Sci. 19, 349-356
-
(2010)
Protein Sci.
, vol.19
, pp. 349-356
-
-
Shen, Y.1
Bryan, P.N.2
He, Y.3
Orban, J.4
Baker, D.5
Bax, A.6
-
47
-
-
0032510057
-
Rad23 links DNA repair to the ubiquitin/proteasome pathway
-
DOI 10.1038/35661
-
Schauber, C., Chen, L., Tongaonkar, P., Vega, I., Lambertson, D., Potts, W., and Madura, K. (1998) Rad23 links DNA repair to the ubiquitin/proteasome pathway. Nature 391, 715-718 (Pubitemid 28113221)
-
(1998)
Nature
, vol.391
, Issue.6668
, pp. 715-718
-
-
Schauber, C.1
Chen, L.2
Tongaonkar, P.3
Vega, I.4
Lambertson, D.5
Potts, W.6
Madura, K.7
-
48
-
-
0034282219
-
The DNA repair protein rad23 is a negative regulator of multi-ubiquitin chain assembly
-
Ortolan, T. G., Tongaonkar, P., Lambertson, D., Chen, L., Schauber, C., and Madura, K. (2000) The DNA repair protein rad23 is a negative regulator of multi-ubiquitin chain assembly. Nat. Cell Biol. 2, 601-608
-
(2000)
Nat. Cell Biol.
, vol.2
, pp. 601-608
-
-
Ortolan, T.G.1
Tongaonkar, P.2
Lambertson, D.3
Chen, L.4
Schauber, C.5
Madura, K.6
-
49
-
-
0033636785
-
The hPLIC proteins may provide a link between the ubiquitination machinery and the proteasome
-
Kleijnen, M. F., Shih, A. H., Zhou, P., Kumar, S., Soccio, R. E., Kedersha, N. L., Gill, G., and Howley, P. M. (2000) The hPLIC proteins may provide a link between the ubiquitination machinery and the proteasome. Mol. Cell 6, 409-419
-
(2000)
Mol. Cell
, vol.6
, pp. 409-419
-
-
Kleijnen, M.F.1
Shih, A.H.2
Zhou, P.3
Kumar, S.4
Soccio, R.E.5
Kedersha, N.L.6
Gill, G.7
Howley, P.M.8
-
50
-
-
20444417275
-
The DNA damage-inducible UbL-UbA protein Ddi1 participates in Mec1-mediated degradation of Ho endonuclease
-
DOI 10.1128/MCB.25.13.5355-5362.2005
-
Kaplun, L., Tzirkin, R., Bakhrat, A., Shabek, N., Ivantsiv, Y., and Raveh, D. (2005) The DNA damage-inducible UbL-UbA protein Ddi1 participates in Mec1-mediated degradation of Ho endonuclease. Mol. Cell Biol. 25, 5355-5362 (Pubitemid 40853573)
-
(2005)
Molecular and Cellular Biology
, vol.25
, Issue.13
, pp. 5355-5362
-
-
Kaplun, L.1
Tzirkin, R.2
Bakhrat, A.3
Shabek, N.4
Ivantsiv, Y.5
Raveh, D.6
-
51
-
-
33644513063
-
Unique role for the UbL-UbA protein Ddi1 in turnover of SCFUfo1 complexes
-
Ivantsiv, Y., Kaplun, L., Tzirkin-Goldin, R., Shabek, N., and Raveh, D. (2006) Unique role for the UbL-UbA protein Ddi1 in turnover of SCFUfo1 complexes. Mol. Cell. Biol. 26, 1579-1588
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 1579-1588
-
-
Ivantsiv, Y.1
Kaplun, L.2
Tzirkin-Goldin, R.3
Shabek, N.4
Raveh, D.5
-
52
-
-
0036713383
-
Proteasome subunit Rpn1 binds ubiquitin-like protein domains
-
DOI 10.1038/ncb845
-
Elsasser, S., Gali, R. R., Schwickart, M., Larsen, C. N., Leggett, D. S., Müller, B., Feng, M. T., Tübing, F., Dittmar, G. A., and Finley, D. (2002) Proteasome subunit Rpn1 binds ubiquitin-like protein domains. Nat. Cell Biol. 4, 725-730 (Pubitemid 34993711)
-
(2002)
Nature Cell Biology
, vol.4
, Issue.9
, pp. 725-730
-
-
Elsasser, S.1
Gali, R.R.2
Schwikart, M.3
Larsen, C.N.4
Leggett, D.S.5
Muller, B.6
Feng, M.T.7
Tubing, F.8
Dittmar, G.A.G.9
Finley, D.10
-
53
-
-
79957637389
-
Identification of a functional docking site in the Rpn1 LRR domain for the UBA-UBL domain protein Ddi1
-
Gomez, T. A., Kolawa, N., Gee, M., Sweredoski, M. J., and Deshaies, R. J. (2011) Identification of a functional docking site in the Rpn1 LRR domain for the UBA-UBL domain protein Ddi1. BMC Biol. 9, 33
-
(2011)
BMC Biol.
, vol.9
, pp. 33
-
-
Gomez, T.A.1
Kolawa, N.2
Gee, M.3
Sweredoski, M.J.4
Deshaies, R.J.5
-
54
-
-
31344457298
-
UBL/UBA ubiquitin receptor proteins bind a common tetraubiquitin chain
-
DOI 10.1016/j.jmb.2005.12.001, PII S0022283605015408
-
Kang, Y., Vossler, R. A., Diaz-Martinez, L. A., Winter, N. S., Clarke, D. J., and Walters, K. J. (2006) UBL/UBA ubiquitin receptor proteins bind a common tetraubiquitin chain. J. Mol. Biol. 356, 1027-1035 (Pubitemid 43145954)
-
(2006)
Journal of Molecular Biology
, vol.356
, Issue.4
, pp. 1027-1035
-
-
Kang, Y.1
Vossler, R.A.2
Diaz-Martinez, L.A.3
Winter, N.S.4
Clarke, D.J.5
Walters, K.J.6
-
55
-
-
0034798985
-
Proteins containing the UBA domain are able to bind to multi-ubiquitin chains
-
DOI 10.1038/ncb1001-939
-
Wilkinson, C. R., Seeger, M., Hartmann-Petersen, R., Stone, M., Wallace, M., Semple, C., and Gordon, C. (2001) Proteins containing the UBA domain are able to bind to multi-ubiquitin chains. Nat. Cell Biol. 3, 939-943 (Pubitemid 32952261)
-
(2001)
Nature Cell Biology
, vol.3
, Issue.10
, pp. 939-943
-
-
Wilkinson, C.R.M.1
Seeger, M.2
Hartmann-Petersen, R.3
Stone, M.4
Wallace, M.5
Semple, C.6
Gordon, C.7
-
56
-
-
4544290828
-
Protein degradation: Recognition of ubiquitinylated substrates
-
DOI 10.1016/j.cub.2004.09.012, PII S0960982204006888
-
Hartmann-Petersen, R., and Gordon, C. (2004) Protein degradation: recognition of ubiquitinylated substrates. Curr. Biol. 14, R754-R756 (Pubitemid 39239346)
-
(2004)
Current Biology
, vol.14
, Issue.18
-
-
Hartmann-Petersen, R.1
Gordon, C.2
-
57
-
-
39049117451
-
Identifying dynamic interactors of protein complexes by quantitative mass spectrometry
-
DOI 10.1074/mcp.M700261-MCP200
-
Wang, X., and Huang, L. (2008) Identifying dynamic interactors of protein complexes by quantitative mass spectrometry. Mol. Cell. Proteomics 7, 46-57 (Pubitemid 351248233)
-
(2008)
Molecular and Cellular Proteomics
, vol.7
, Issue.1
, pp. 46-57
-
-
Wang, X.1
Huang, L.2
-
58
-
-
20444391345
-
Structural determinants for selective recognition of a Lys48-linked polyubiquitin chain by a UBA domain
-
DOI 10.1016/j.molcel.2005.05.013, PII S1097276505013195
-
Varadan, R., Assfalg, M., Raasi, S., Pickart, C., and Fushman, D. (2005) Structural determinants for selective recognition of a Lys48-linked polyubiquitin chain by a UBA domain. Mol. Cell 18, 687-698 (Pubitemid 40804804)
-
(2005)
Molecular Cell
, vol.18
, Issue.6
, pp. 687-698
-
-
Varadan, R.1
Assfalg, M.2
Raasi, S.3
Pickart, C.4
Fushman, D.5
-
59
-
-
39649120317
-
Affinity makes the difference: Nonselective interaction of the UBA domain of Ubiquilin-1 with monomeric ubiquitin and polyubiquitin chains
-
Zhang, D., Raasi, S., and Fushman, D. (2008) Affinity makes the difference: nonselective interaction of the UBA domain of Ubiquilin-1 with monomeric ubiquitin and polyubiquitin chains. J. Mol. Biol. 377, 162-180
-
(2008)
J. Mol. Biol.
, vol.377
, pp. 162-180
-
-
Zhang, D.1
Raasi, S.2
Fushman, D.3
-
60
-
-
25144507198
-
Mechanism of Lys48-linked polyubiquitin chain recognition by the Mud1 UBA domain
-
DOI 10.1038/sj.emboj.7600797, PII 7600797
-
Trempe, J. F., Brown, N. R., Lowe, E. D., Gordon, C., Campbell, I. D., Noble, M. E., and Endicott, J. A. (2005) Mechanism of Lys48-linked polyubiquitin chain recognition by the Mud1 UBA domain. EMBO J. 24, 3178-3189 (Pubitemid 41348693)
-
(2005)
EMBO Journal
, vol.24
, Issue.18
, pp. 3178-3189
-
-
Trempe, J.-F.1
Brown, N.R.2
Lowe, E.D.3
Gordon, C.4
Campbell, I.D.5
Noble, M.E.M.6
Endicott, J.A.7
-
61
-
-
26944465404
-
Diverse polyubiquitin interaction properties of ubiquitin-associated domains
-
DOI 10.1038/nsmb962, PII NSMB962
-
Raasi, S., Varadan, R., Fushman, D., and Pickart, C. M. (2005) Diverse polyubiquitin interaction properties of ubiquitin-associated domains. Nat. Struct. Mol. Biol. 12, 708-714 (Pubitemid 43086277)
-
(2005)
Nature Structural and Molecular Biology
, vol.12
, Issue.8
, pp. 708-714
-
-
Raasi, S.1
Varadan, R.2
Fushman, D.3
Pickart, C.M.4
-
62
-
-
4143061786
-
Binding of polyubiquitin chains to ubiquitin-associated (UBA) domains of HHR23A
-
DOI 10.1016/j.jmb.2004.06.057, PII S0022283604007612
-
Raasi, S., Orlov, I., Fleming, K. G., and Pickart, C. M. (2004) Binding of polyubiquitin chains to ubiquitin-associated (UBA) domains of HHR23A. J. Mol. Biol. 341, 1367-1379 (Pubitemid 39092321)
-
(2004)
Journal of Molecular Biology
, vol.341
, Issue.5
, pp. 1367-1379
-
-
Raasi, S.1
Orlov, I.2
Fleming, K.G.3
Pickart, C.M.4
-
63
-
-
0028673594
-
Chemical shifts as a tool for structure determination
-
Wishart, D. S., and Sykes, B. D. (1994) Chemical shifts as a tool for structure determination. Methods Enzymol. 239, 363-392
-
(1994)
Methods Enzymol.
, vol.239
, pp. 363-392
-
-
Wishart, D.S.1
Sykes, B.D.2
-
64
-
-
0029283884
-
Chemical shifts and three-dimensional protein structures
-
Oldfield, E. (1995) Chemical shifts and three-dimensional protein structures. J. Biomol. NMR 5, 217-225
-
(1995)
J. Biomol. NMR
, vol.5
, pp. 217-225
-
-
Oldfield, E.1
-
65
-
-
0037039335
-
Mapping protein-protein interactions in solution by NMR spectroscopy
-
Zuiderweg, E. R. (2002) Mapping protein-protein interactions in solution by NMR spectroscopy. Biochemistry 41, 1-7
-
(2002)
Biochemistry
, vol.41
, pp. 1-7
-
-
Zuiderweg, E.R.1
-
66
-
-
72149114101
-
Together, Rpn10 and Dsk2 can serve as a polyubiquitin chain-length sensor
-
Zhang, D., Chen, T., Ziv, I., Rosenzweig, R., Matiuhin, Y., Bronner, V., Glickman, M. H., and Fushman, D. (2009) Together, Rpn10 and Dsk2 can serve as a polyubiquitin chain-length sensor. Mol. Cell 36, 1018-1033
-
(2009)
Mol. Cell
, vol.36
, pp. 1018-1033
-
-
Zhang, D.1
Chen, T.2
Ziv, I.3
Rosenzweig, R.4
Matiuhin, Y.5
Bronner, V.6
Glickman, M.H.7
Fushman, D.8
-
67
-
-
0037256228
-
NMR methods for the determination of protein-ligand dissociation constants
-
Fielding, L. (2003) NMR methods for the determination of protein-ligand dissociation constants. Curr. Top. Med. Chem. 3, 39-53
-
(2003)
Curr. Top. Med. Chem.
, vol.3
, pp. 39-53
-
-
Fielding, L.1
-
68
-
-
0142184432
-
Studies of protein-ligand interactions by NMR
-
Clarkson, J., and Campbell, I. D. (2003) Studies of protein-ligand interactions by NMR. Biochem. Soc. Trans. 31, 1006-1009 (Pubitemid 37305036)
-
(2003)
Biochemical Society Transactions
, vol.31
, Issue.5
, pp. 1006-1009
-
-
Clarkson, J.1
Campbell, I.D.2
-
69
-
-
0035034417
-
UBA domains of DNA damage-inducible proteins interact with ubiquitin
-
DOI 10.1038/87575
-
Bertolaet, B. L., Clarke, D. J., Wolff, M., Watson, M. H., Henze, M., Divita, G., and Reed, S. I. (2001) UBA domains of DNA damage-inducible proteins interact with ubiquitin. Nat. Struct. Biol. 8, 417-422 (Pubitemid 32381288)
-
(2001)
Nature Structural Biology
, vol.8
, Issue.5
, pp. 417-422
-
-
Bertolaet, B.L.1
Clarke, D.J.2
Wolff, M.3
Watson, M.H.4
Henze, M.5
Divita, G.6
Reed, S.I.7
-
70
-
-
68249135262
-
Avid interactions underlie the Lys63-linked polyubiquitin binding specificities observed for UBA domains
-
Sims, J. J., Haririnia, A., Dickinson, B. C., Fushman, D., and Cohen, R. E. (2009) Avid interactions underlie the Lys63-linked polyubiquitin binding specificities observed for UBA domains. Nat. Struct. Mol. Biol. 16, 883-889
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 883-889
-
-
Sims, J.J.1
Haririnia, A.2
Dickinson, B.C.3
Fushman, D.4
Cohen, R.E.5
-
71
-
-
1642482834
-
Specificity of the Interaction between Ubiquitin-associated Domains and Ubiquitin
-
DOI 10.1074/jbc.M312865200
-
Mueller, T. D., Kamionka, M., and Feigon, J. (2004) Specificity of the interaction between ubiquitin-associated domains and ubiquitin. J. Biol. Chem. 279, 11926-11936 (Pubitemid 38401698)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.12
, pp. 11926-11936
-
-
Mueller, T.D.1
Kamionka, M.2
Feigon, J.3
-
72
-
-
0141480905
-
Binding surface mapping of intra- and interdomain interactions among hHR23B, ubiquitin, and polyubiquitin binding site 2 of S5a
-
Ryu, K. S., Lee, K. J., Bae, S. H., Kim, B. K., Kim, K. A., and Choi, B. S. (2003) Binding surface mapping of intra- and interdomain interactions among hHR23B, ubiquitin, and polyubiquitin binding site 2 of S5a. J. Biol. Chem. 278, 36621-36627
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 36621-36627
-
-
Ryu, K.S.1
Lee, K.J.2
Bae, S.H.3
Kim, B.K.4
Kim, K.A.5
Choi, B.S.6
-
73
-
-
0034645063
-
Identification of ubiquilin, a novel presenilin interactor that increases presenilin protein accumulation
-
Mah, A. L., Perry, G., Smith, M. A., and Monteiro, M. J. (2000) Identification of ubiquilin, a novel presenilin interactor that increases presenilin protein accumulation. J. Cell Biol. 151, 847-862
-
(2000)
J. Cell Biol.
, vol.151
, pp. 847-862
-
-
Mah, A.L.1
Perry, G.2
Smith, M.A.3
Monteiro, M.J.4
-
74
-
-
17044420416
-
Structure of the UBA domain of Dsk2p in complex with ubiquitin molecular determinants for ubiquitin recognition
-
Ohno, A., Jee, J., Fujiwara, K., Tenno, T., Goda, N., Tochio, H., Kobayashi, H., Hiroaki, H., and Shirakawa, M. (2005) Structure of the UBA domain of Dsk2p in complex with ubiquitin molecular determinants for ubiquitin recognition. Structure 13, 521-532
-
(2005)
Structure
, vol.13
, pp. 521-532
-
-
Ohno, A.1
Jee, J.2
Fujiwara, K.3
Tenno, T.4
Goda, N.5
Tochio, H.6
Kobayashi, H.7
Hiroaki, H.8
Shirakawa, M.9
-
75
-
-
76749166648
-
An improved SUMmOn-based methodology for the identification of ubiquitin and ubiquitin-like protein conjugation sites identifies novel ubiquitin-like protein chain linkages
-
Jeram, S. M., Srikumar, T., Zhang, X. D., Anne Eisenhauer, H., Rogers, R., Pedrioli, P. G., Matunis, M., and Raught, B. (2010) An improved SUMmOn-based methodology for the identification of ubiquitin and ubiquitin-like protein conjugation sites identifies novel ubiquitin-like protein chain linkages. Proteomics 10, 254-265
-
(2010)
Proteomics
, vol.10
, pp. 254-265
-
-
Jeram, S.M.1
Srikumar, T.2
Zhang, X.D.3
Anne Eisenhauer, H.4
Rogers, R.5
Pedrioli, P.G.6
Matunis, M.7
Raught, B.8
-
76
-
-
62049086263
-
The mechanism of poly-NEDD8 chain formation in vitro
-
Ohki, Y., Funatsu, N., Konishi, N., and Chiba, T. (2009) The mechanism of poly-NEDD8 chain formation in vitro. Biochem. Biophys. Res. Commun. 381, 443-447
-
(2009)
Biochem. Biophys. Res. Commun.
, vol.381
, pp. 443-447
-
-
Ohki, Y.1
Funatsu, N.2
Konishi, N.3
Chiba, T.4
-
77
-
-
44449129585
-
A targeted proteomic analysis of the ubiquitin-like modifier nedd8 and associated proteins
-
Jones, J., Wu, K., Yang, Y., Guerrero, C., Nillegoda, N., Pan, Z. Q., and Huang, L. (2008) A targeted proteomic analysis of the ubiquitin-like modifier nedd8 and associated proteins. J. Proteome Res. 7, 1274-1287
-
(2008)
J. Proteome Res.
, vol.7
, pp. 1274-1287
-
-
Jones, J.1
Wu, K.2
Yang, Y.3
Guerrero, C.4
Nillegoda, N.5
Pan, Z.Q.6
Huang, L.7
-
78
-
-
0036674441
-
Structural attributes in the conjugation of ubiquitin, SUMO and RUB to protein substrates
-
Goettsch, S., and Bayer, P. (2002) Structural attributes in the conjugation of ubiquitin, SUMO and RUB to protein substrates. Front. Biosci. 7, a148-a162
-
(2002)
Front. Biosci.
, vol.7
-
-
Goettsch, S.1
Bayer, P.2
-
79
-
-
79955620198
-
Constructing and decoding unconventional ubiquitin chains
-
Behrends, C., and Harper, J. W. (2011) Constructing and decoding unconventional ubiquitin chains. Nat. Struct. Mol. Biol. 18, 520-528
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 520-528
-
-
Behrends, C.1
Harper, J.W.2
-
80
-
-
44649101850
-
Atypical ubiquitin chains: New molecular signals. 'Protein Modifications: Beyond the Usual Suspects' Review Series
-
DOI 10.1038/embor.2008.93, PII EMBOR200893
-
Ikeda, F., and Dikic, I. (2008) Atypical ubiquitin chains: new molecular signals. 'Protein Modifications: Beyond the Usual Suspects' review series. EMBO Rep. 9, 536-542 (Pubitemid 351772916)
-
(2008)
EMBO Reports
, vol.9
, Issue.6
, pp. 536-542
-
-
Ikeda, F.1
Dikic, I.2
-
81
-
-
79955780837
-
A perturbed ubiquitin landscape distinguishes between ubiquitin in trafficking and in proteolysis
-
Ziv, I., Matiuhin, Y., Kirkpatrick, D. S., Erpapazoglou, Z., Leon, S., Pantazopoulou, M., Kim, W., Gygi, S. P., Haguenauer-Tsapis, R., Reis, N., Glickman, M. H., and Kleifeld, O. (2011) A perturbed ubiquitin landscape distinguishes between ubiquitin in trafficking and in proteolysis. Mol. Cell. Proteomics 10, M111.009753
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Ziv, I.1
Matiuhin, Y.2
Kirkpatrick, D.S.3
Erpapazoglou, Z.4
Leon, S.5
Pantazopoulou, M.6
Kim, W.7
Gygi, S.P.8
Haguenauer-Tsapis, R.9
Reis, N.10
Glickman, M.H.11
Kleifeld, O.12
-
82
-
-
0025644201
-
A 25-kilodalton ubiquitin carrier protein (E2) catalyzes multi-ubiquitin chain synthesis via lysine 48 of ubiquitin
-
Chen, Z., and Pickart, C. M. (1990) A 25-kilodalton ubiquitin carrier protein (E2) catalyzes multi-ubiquitin chain synthesis via lysine 48 of ubiquitin. J. Biol. Chem. 265, 21835-21842 (Pubitemid 120014232)
-
(1990)
Journal of Biological Chemistry
, vol.265
, Issue.35
, pp. 21835-21842
-
-
Chen, Z.1
Pickart, C.M.2
-
83
-
-
0026076015
-
25K) and overexpression of the functional enzyme in Escherichia coli
-
Chen, Z. J., Niles, E. G., and Pickart, C. M. (1991) Isolation of a cDNA encoding a mammalian multiubiquitinating enzyme (E225K) and overexpression of the functional enzyme in Escherichia coli. J. Biol. Chem. 266, 15698-15704 (Pubitemid 21907714)
-
(1991)
Journal of Biological Chemistry
, vol.266
, Issue.24
, pp. 15698-15704
-
-
Chen, Z.1
Niles, E.G.2
Pickart, C.M.3
-
84
-
-
0035958926
-
In vitro assembly and recognition of Lys-63 polyubiquitin chains
-
Hofmann, R. M., and Pickart, C. M. (2001) In vitro assembly and recognition of Lys-63 polyubiquitin chains. J. Biol. Chem. 276, 27936-27943
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 27936-27943
-
-
Hofmann, R.M.1
Pickart, C.M.2
-
85
-
-
0035875079
-
Molecular insights into polyubiquitin chain assembly: Crystal structure of the Mms2/Ubc13 heterodimer
-
DOI 10.1016/S0092-8674(01)00387-7
-
VanDemark, A. P., Hofmann, R. M., Tsui, C., Pickart, C. M., and Wolberger, C. (2001) Molecular insights into polyubiquitin chain assembly: crystal structure of the Mms2/Ubc13 heterodimer. Cell 105, 711-720 (Pubitemid 32635101)
-
(2001)
Cell
, vol.105
, Issue.6
, pp. 711-720
-
-
VanDemark, A.P.1
Hofmann, R.M.2
Tsui, C.3
Pickart, C.M.4
Wolberger, C.5
-
86
-
-
70350339406
-
Targeting proteins for degradation
-
Schrader, E. K., Harstad, K. G., and Matouschek, A. (2009) Targeting proteins for degradation. Nat. Chem. Biol. 5, 815-822
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 815-822
-
-
Schrader, E.K.1
Harstad, K.G.2
Matouschek, A.3
-
87
-
-
67649425771
-
The proteasomal system
-
Jung, T., Catalgol, B., and Grune, T. (2009) The proteasomal system. Mol. Aspects Med. 30, 191-296
-
(2009)
Mol. Aspects Med.
, vol.30
, pp. 191-296
-
-
Jung, T.1
Catalgol, B.2
Grune, T.3
-
88
-
-
63049109748
-
The ubiquitin receptor Rad23: At the crossroads of nucleotide excision repair and proteasomal degradation
-
Dantuma, N. P., Heinen, C., and Hoogstraten, D. (2009) The ubiquitin receptor Rad23: at the crossroads of nucleotide excision repair and proteasomal degradation. DNA Repair (Amst.) 8, 449-460
-
(2009)
DNA Repair (Amst.)
, vol.8
, pp. 449-460
-
-
Dantuma, N.P.1
Heinen, C.2
Hoogstraten, D.3
-
89
-
-
65649115267
-
Recognition and processing of ubiquitin-protein conjugates by the proteasome
-
Finley, D. (2009) Recognition and processing of ubiquitin-protein conjugates by the proteasome. Annu. Rev. Biochem. 78, 477-513
-
(2009)
Annu. Rev. Biochem.
, vol.78
, pp. 477-513
-
-
Finley, D.1
-
90
-
-
84866998027
-
Structural and biochemical studies of the open state of Lys48-linked diubiquitin
-
Lai, M. Y., Zhang, D., Laronde-Leblanc, N., and Fushman, D. (2012) Structural and biochemical studies of the open state of Lys48-linked diubiquitin. Biochim. Biophys. Acta 1823, 2046-2056
-
(2012)
Biochim. Biophys. Acta
, vol.1823
, pp. 2046-2056
-
-
Lai, M.Y.1
Zhang, D.2
Laronde-Leblanc, N.3
Fushman, D.4
-
91
-
-
0029806477
-
The multiubiquitin-chain-binding protein Mcb1 is a component of the 26S proteasome in Saccharomyces cerevisiae and plays a nonessential, substrate- specific role in protein turnover
-
van Nocker, S., Sadis, S., Rubin, D. M., Glickman, M., Fu, H., Coux, O., Wefes, I., Finley, D., and Vierstra, R. D. (1996) The multiubiquitin-chain- binding protein Mcb1 is a component of the 26S proteasome in Saccharomyces cerevisiae and plays a nonessential, substrate-specific role in protein turnover. Mol. Cell Biol. 16, 6020-6028 (Pubitemid 26360961)
-
(1996)
Molecular and Cellular Biology
, vol.16
, Issue.11
, pp. 6020-6028
-
-
Van Nocker, S.1
Sadis, S.2
Rubin, D.M.3
Glickman, M.4
Fu, H.5
Coux, O.6
Wefes, I.7
Finley, D.8
Vierstra, R.D.9
-
92
-
-
44349116590
-
Proteasome subunit Rpn13 is a novel ubiquitin receptor
-
DOI 10.1038/nature06926, PII NATURE06926
-
Husnjak, K., Elsasser, S., Zhang, N., Chen, X., Randles, L., Shi, Y., Hofmann, K., Walters, K. J., Finley, D., and Dikic, I. (2008) Proteasome subunit Rpn13 is a novel ubiquitin receptor. Nature 453, 481-488 (Pubitemid 351733317)
-
(2008)
Nature
, vol.453
, Issue.7194
, pp. 481-488
-
-
Husnjak, K.1
Elsasser, S.2
Zhang, N.3
Chen, X.4
Randles, L.5
Shi, Y.6
Hofmann, K.7
Walters, K.J.8
Finley, D.9
Dikic, I.10
-
93
-
-
0037129213
-
A proteasomal ATPase subunit recognizes the polyubiquitin degradation signal
-
DOI 10.1038/416763a
-
Lam, Y. A., Lawson, T. G., Velayutham, M., Zweier, J. L., and Pickart, C. M. (2002) A proteasomal ATPase subunit recognizes the polyubiquitin degradation signal. Nature 416, 763-767 (Pubitemid 34429155)
-
(2002)
Nature
, vol.416
, Issue.6882
, pp. 763-767
-
-
Lam, Y.A.1
Lawson, T.G.2
Velayutham, M.3
Zweler, J.L.4
Pickart, C.M.5
-
94
-
-
84860773994
-
NEDD8 links cullin-RING ubiquitin ligase function to the p97 pathway
-
Besten, W., Verma, R., Kleiger, G., Oania, R. S., and Deshaies, R. J. (2012) NEDD8 links cullin-RING ubiquitin ligase function to the p97 pathway. Nat. Struct. Mol. Biol. 19, 511-516
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 511-516
-
-
Besten, W.1
Verma, R.2
Kleiger, G.3
Oania, R.S.4
Deshaies, R.J.5
-
95
-
-
84860120476
-
UBXN7 docks on neddylated cullin complexes using its UIM motif and causes HIF1α accumulation
-
Bandau, S., Knebel, A., Gage, Z. O., Wood, N. T., and Alexandru, G. (2012) UBXN7 docks on neddylated cullin complexes using its UIM motif and causes HIF1α accumulation. BMC Biol. 10, 36
-
(2012)
BMC Biol.
, vol.10
, pp. 36
-
-
Bandau, S.1
Knebel, A.2
Gage, Z.O.3
Wood, N.T.4
Alexandru, G.5
-
96
-
-
0347087494
-
Complementary Roles for Rpn11 and Ubp6 in Deubiquitination and Proteolysis by the Proteasome
-
DOI 10.1074/jbc.M307050200
-
Guterman, A., and Glickman, M. H. (2004) Complementary roles for Rpn11 and Ubp6 in deubiquitination and proteolysis by the proteasome. J. Biol. Chem. 279, 1729-1738 (Pubitemid 38084440)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.3
, pp. 1729-1738
-
-
Guterman, A.1
Glickman, M.H.2
-
97
-
-
27644587453
-
Assaying degradation and deubiquitination of a ubiquitinated substrate by purified 26s proteasomes
-
DOI 10.1016/S0076-6879(05)98032-4, PII S0076687905980324, Ubiquitin and Protein Degradation (Part A)
-
Verma, R., and Deshaies, R. J. (2005) Assaying degradation and deubiquitination of a ubiquitinated substrate by purified 26S proteasomes. Methods Enzymol. 398, 391-399 (Pubitemid 41578900)
-
(2005)
Methods in Enzymology
, vol.398
, pp. 391-399
-
-
Verma, R.1
Deshaies, R.J.2
-
98
-
-
79955470830
-
Trimming of ubiquitin chains by proteasome-associated deubiquitinating enzymes
-
Lee, M. J., Lee, B. H., Hanna, J., King, R. W., and Finley, D. (2011) Trimming of ubiquitin chains by proteasome-associated deubiquitinating enzymes. Mol. Cell. Proteomics 10, R110.003871
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Lee, M.J.1
Lee, B.H.2
Hanna, J.3
King, R.W.4
Finley, D.5
-
99
-
-
27644460896
-
In Vitro cleavage of Nedd8 from cullin 1 by COP9 signalosome and deneddylase 1
-
DOI 10.1016/S0076-6879(05)98042-7, PII S0076687905980427, Ubiquitin and Protein Degradation (Part A)
-
Yamoah, K., Wu, K., and Pan, Z. Q. (2005) In vitro cleavage of Nedd8 from cullin 1 by COP9 signalosome and deneddylase 1. Methods Enzymol. 398, 509-522 (Pubitemid 41578910)
-
(2005)
Methods in Enzymology
, vol.398
, pp. 509-522
-
-
Yamoah, K.1
Wu, K.2
Pan, Z.3
-
100
-
-
22744432989
-
CAND1 enhances deneddylation of CUL1 by COP9 signalosome
-
DOI 10.1016/j.bbrc.2005.06.188, PII S0006291X05014397
-
Min, K. W., Kwon, M. J., Park, H. S., Park, Y., Yoon, S. K., and Yoon, J. B. (2005) CAND1 enhances deneddylation of CUL1 by COP9 signalosome. Biochem. Biophys. Res. Commun. 334, 867-874 (Pubitemid 41033201)
-
(2005)
Biochemical and Biophysical Research Communications
, vol.334
, Issue.3
, pp. 867-874
-
-
Min, K.-W.1
Kwon, M.-J.2
Park, H.-S.3
Park, Y.4
Sungjoo, K.Y.5
Yoon, J.-B.6
-
101
-
-
0035906430
-
Promotion of NEDD8-CUL1 conjugate cleavage by COP9 signalosome
-
DOI 10.1126/science.1059780
-
Lyapina, S., Cope, G., Shevchenko, A., Serino, G., Tsuge, T., Zhou, C., Wolf, D. A., Wei, N., and Deshaies, R. J. (2001) Promotion of NEDDCUL1 conjugate cleavage by COP9 signalosome. Science 292, 1382-1385 (Pubitemid 32476226)
-
(2001)
Science
, vol.292
, Issue.5520
, pp. 1382-1385
-
-
Lyapina, S.1
Cope, G.2
Shevchenko, A.3
Serino, G.4
Tsuge, T.5
Zhou, C.6
Wolf, D.A.7
Wei, N.8
Shevchenko, A.9
Deshaies, R.J.10
-
102
-
-
79953307883
-
Dual function of Rpn5 in two PCI complexes, the 26S proteasome and COP9 signalosome
-
Yu, Z., Kleifeld, O., Lande-Atir, A., Bsoul, M., Kleiman, M., Krutauz, D., Book, A., Vierstra, R. D., Hofmann, K., Reis, N., Glickman, M. H., and Pick, E. (2011) Dual function of Rpn5 in two PCI complexes, the 26S proteasome and COP9 signalosome. Mol. Biol. Cell 22, 911-920
-
(2011)
Mol. Biol. Cell
, vol.22
, pp. 911-920
-
-
Yu, Z.1
Kleifeld, O.2
Lande-Atir, A.3
Bsoul, M.4
Kleiman, M.5
Krutauz, D.6
Book, A.7
Vierstra, R.D.8
Hofmann, K.9
Reis, N.10
Glickman, M.H.11
Pick, E.12
-
103
-
-
33846548206
-
Basis for a ubiquitin-like protein thioester switch toggling E1-E2 affinity
-
DOI 10.1038/nature05490, PII NATURE05490
-
Huang, D. T., Hunt, H. W., Zhuang, M., Ohi, M. D., Holton, J. M., and Schulman, B. A. (2007) Basis for a ubiquitin-like protein thioester switch toggling E1-E2 affinity. Nature 445, 394-398 (Pubitemid 46160903)
-
(2007)
Nature
, vol.445
, Issue.7126
, pp. 394-398
-
-
Huang, D.T.1
Hunt, H.W.2
Zhuang, M.3
Ohi, M.D.4
Holton, J.M.5
Schulman, B.A.6
-
104
-
-
40949086767
-
Identification of conjugation specificity determinants unmasks vestigial preference for ubiquitin within the NEDD8 E2
-
DOI 10.1038/nsmb.1387, PII NSMB1387
-
Huang, D. T., Zhuang, M., Ayrault, O., and Schulman, B. A. (2008) Identification of conjugation specificity determinants unmasks vestigial preference for ubiquitin within the NEDD8 E2. Nat. Struct. Mol. Biol. 15, 280-287 (Pubitemid 351654042)
-
(2008)
Nature Structural and Molecular Biology
, vol.15
, Issue.3
, pp. 280-287
-
-
Huang, D.T.1
Zhuang, M.2
Ayrault, O.3
Schulman, B.A.4
-
105
-
-
50149089376
-
Structural dissection of a gating mechanism preventing misactivation of ubiquitin by NEDD8's E1
-
Souphron, J., Waddell, M. B., Paydar, A., Tokgöz-Gromley, Z., Roussel, M. F., and Schulman, B. A. (2008) Structural dissection of a gating mechanism preventing misactivation of ubiquitin by NEDD8's E1. Biochemistry 47, 8961-8969
-
(2008)
Biochemistry
, vol.47
, pp. 8961-8969
-
-
Souphron, J.1
Waddell, M.B.2
Paydar, A.3
Tokgöz-Gromley, Z.4
Roussel, M.F.5
Schulman, B.A.6
-
106
-
-
84862908377
-
Changes in the ratio of free Nedd8 to ubiquitin triggers neddylation by ubiquitin enzymes
-
Hjerpe, R., Thomas, Y., Chen, J., Zemla, A., Curran, S., Shpiro, N., Dick, L. R., and Kurz, T. (2011) Changes in the ratio of free Nedd8 to ubiquitin triggers neddylation by ubiquitin enzymes. Biochem. J. 441, 927-936
-
(2011)
Biochem. J.
, vol.441
, pp. 927-936
-
-
Hjerpe, R.1
Thomas, Y.2
Chen, J.3
Zemla, A.4
Curran, S.5
Shpiro, N.6
Dick, L.R.7
Kurz, T.8
-
107
-
-
79953314427
-
Polyubiquitin binding and cross-reactivity in the USP domain deubiquitinase USP21
-
Ye, Y., Akutsu, M., Reyes-Turcu, F., Enchev, R. I., Wilkinson, K. D., and Komander, D. (2011) Polyubiquitin binding and cross-reactivity in the USP domain deubiquitinase USP21. EMBO Rep. 12, 350-357
-
(2011)
EMBO Rep.
, vol.12
, pp. 350-357
-
-
Ye, Y.1
Akutsu, M.2
Reyes-Turcu, F.3
Enchev, R.I.4
Wilkinson, K.D.5
Komander, D.6
-
108
-
-
79960897923
-
The TFIIH subunit Tfb3 regulates cullin neddylation
-
Rabut, G., Le Dez, G., Verma, R., Makhnevych, T., Knebel, A., Kurz, T., Boone, C., Deshaies, R. J., and Peter, M. (2011) The TFIIH subunit Tfb3 regulates cullin neddylation. Mol. Cell 43, 488-495
-
(2011)
Mol. Cell
, vol.43
, pp. 488-495
-
-
Rabut, G.1
Le Dez, G.2
Verma, R.3
Makhnevych, T.4
Knebel, A.5
Kurz, T.6
Boone, C.7
Deshaies, R.J.8
Peter, M.9
-
109
-
-
0347416977
-
The Structure of the APPBP1-UBA3-NEDD8-ATP Complex Reveals the Basis for Selective Ubiquitin-like Protein Activation by an E1
-
DOI 10.1016/S1097-2765(03)00452-0
-
Walden, H., Podgorski, M. S., Huang, D. T., Miller, D. W., Howard, R. J., Minor, D. L., Holton, J. M., and Schulman, B. A. (2003) The structure of the APPBP1-UBA3-NEDD8-ATP complex reveals the basis for selective ubiquitin-like protein activation by an E1. Mol. Cell 12, 1427-1437 (Pubitemid 38037012)
-
(2003)
Molecular Cell
, vol.12
, Issue.6
, pp. 1427-1437
-
-
Walden, H.1
Podgorski, M.S.2
Huang, D.T.3
Miller, D.W.4
Howard, R.J.5
Minor Jr., D.L.6
Holton, J.M.7
Schulman, B.A.8
-
110
-
-
79953197650
-
Polyubiquitin linkage profiles in three models of proteolytic stress suggest the etiology of Alzheimer disease
-
Dammer, E. B., Na, C. H., Xu, P., Seyfried, N. T., Duong, D. M., Cheng, D., Gearing, M., Rees, H., Lah, J. J., Levey, A. I., Rush, J., and Peng, J. (2011) Polyubiquitin linkage profiles in three models of proteolytic stress suggest the etiology of Alzheimer disease. J. Biol. Chem. 286, 10457-10465
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 10457-10465
-
-
Dammer, E.B.1
Na, C.H.2
Xu, P.3
Seyfried, N.T.4
Duong, D.M.5
Cheng, D.6
Gearing, M.7
Rees, H.8
Lah, J.J.9
Levey, A.I.10
Rush, J.11
Peng, J.12
-
111
-
-
0034730172
-
Inhibition of the ubiquitin-proteasome system in Alzheimer's disease
-
Lam, Y. A., Pickart, C. M., Alban, A., Landon, M., Jamieson, C., Ramage, R., Mayer, R. J., and Layfield, R. (2000) Inhibition of the ubiquitin-proteasome system in Alzheimer's disease. Proc. Natl. Acad. Sci. U.S.A. 97, 9902-9906
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 9902-9906
-
-
Lam, Y.A.1
Pickart, C.M.2
Alban, A.3
Landon, M.4
Jamieson, C.5
Ramage, R.6
Mayer, R.J.7
Layfield, R.8
-
112
-
-
0034808577
-
Parkin is linked to the ubiquitin pathway
-
DOI 10.1007/s001090100242
-
Tanaka, K., Suzuki, T., Chiba, T., Shimura, H., Hattori, N., and Mizuno, Y. (2001) Parkin is linked to the ubiquitin pathway. J. Mol. Med. (Berl.) 79, 482-494 (Pubitemid 32905545)
-
(2001)
Journal of Molecular Medicine
, vol.79
, Issue.9
, pp. 482-494
-
-
Tanaka, K.1
Suzuki, T.2
Chiba, T.3
Shimura, H.4
Hattori, N.5
Mizuno, Y.6
-
113
-
-
13544270760
-
Accumulation of NEDD8 in neuronal and glial inclusions of neurodegenerative disorders
-
DOI 10.1111/j.1365-2990.2004.00603.x
-
Mori, F., Nishie, M., Piao, Y. S., Kito, K., Kamitani, T., Takahashi, H., and Wakabayashi, K. (2005) Accumulation of NEDD8 in neuronal and glial inclusions of neurodegenerative disorders. Neuropathol. Appl. Neurobiol. 31, 53-61 (Pubitemid 40222825)
-
(2005)
Neuropathology and Applied Neurobiology
, vol.31
, Issue.1
, pp. 53-61
-
-
Mori, F.1
Nishie, M.2
Piao, Y.-S.3
Kito, K.4
Kamitani, T.5
Takahashi, H.6
Wakabayashi, K.7
|