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Volumn 3, Issue , 2012, Pages

Erratum: A multi-omic map of the lipid-producing yeast Rhodosporidium toruloides (Nature Communications (2012) 3 (1112) doi:10.1038/ncomms2112);A multi-omic map of the lipid-producing yeast Rhodosporidium toruloides

Author keywords

[No Author keywords available]

Indexed keywords

BIOFUEL; CARBOHYDRATE; FATTY ACID SYNTHASE; LIPID; TRANSCRIPTOME; TRIACYLGLYCEROL;

EID: 84869387481     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms2901     Document Type: Erratum
Times cited : (333)

References (60)
  • 2
    • 78650155069 scopus 로고    scopus 로고
    • Biofuels: Biomolecular engineering fundamentals and advances
    • Li, H., Cann, A. F. & Liao, J. C. Biofuels: biomolecular engineering fundamentals and advances. Annu. Rev. Chem. Biomol. Eng. 1, 19-36 (2010).
    • (2010) Annu. Rev. Chem. Biomol. Eng. , vol.1 , pp. 19-36
    • Li, H.1    Cann, A.F.2    Liao, J.C.3
  • 3
    • 80052743990 scopus 로고    scopus 로고
    • Hydrodeoxygenation of waste fat for diesel production: Study on model feed with Pt/alumina catalyst
    • Madsen, A. T., Ahmed, E. H., Christensen, C. H., Fehrmann, R. & Riisager, A. Hydrodeoxygenation of waste fat for diesel production: Study on model feed with Pt/alumina catalyst. Fuel 90, 3433-3438 (2011).
    • (2011) Fuel , vol.90 , pp. 3433-3438
    • Madsen, A.T.1    Ahmed, E.H.2    Christensen, C.H.3    Fehrmann, R.4    Riisager, A.5
  • 4
    • 45049086849 scopus 로고    scopus 로고
    • Biofuel alternatives to ethanol: Pumping the microbial well
    • Fortman, J. L. et al. Biofuel alternatives to ethanol: pumping the microbial well. Trends Biotechnol. 26, 375-381 (2008).
    • (2008) Trends Biotechnol. , vol.26 , pp. 375-381
    • Fortman, J.L.1
  • 5
    • 75749125061 scopus 로고    scopus 로고
    • Microbial production of fatty-acid-derived fuels and chemicals from plant biomass
    • Steen, E. J. et al. Microbial production of fatty-acid-derived fuels and chemicals from plant biomass. Nature 463, 559-562 (2010).
    • (2010) Nature , vol.463 , pp. 559-562
    • Steen, E.J.1
  • 6
    • 0036359804 scopus 로고    scopus 로고
    • The biochemistry and molecular biology of lipid accumulation in oleaginous microorganisms
    • DOI 10.1016/S0065-2164(02)51000-5
    • Ratledge, C. & Wynn, J. P. The biochemistry and molecular biology of lipid accumulation in oleaginous microorganisms. Adv. Appl. Microbiol. 51, 1-51 (2002). (Pubitemid 34984904)
    • (2002) Advances in Applied Microbiology , vol.51 , pp. 1-51
    • Ratledge, C.1    Wynn, J.P.2
  • 7
    • 78751634234 scopus 로고    scopus 로고
    • Lipids from heterotrophic microbes: Advances in metabolism research
    • Kosa, M. & Ragauskas, A. J. Lipids from heterotrophic microbes: advances in metabolism research. Trends Biotechnol. 29, 53-61 (2011).
    • (2011) Trends Biotechnol , vol.29 , pp. 53-61
    • Kosa, M.1    Ragauskas, A.J.2
  • 9
    • 79955560245 scopus 로고    scopus 로고
    • An overview of lipid metabolism in yeasts and its impact on biotechnological processes
    • Beopoulos, A., Nicaud, J. M. & Gaillardin, C. An overview of lipid metabolism in yeasts and its impact on biotechnological processes. Appl. Microbiol. Biotechnol. 90, 1193-1206 (2011).
    • (2011) Appl. Microbiol. Biotechnol. , vol.90 , pp. 1193-1206
    • Beopoulos, A.1    Nicaud, J.M.2    Gaillardin, C.3
  • 10
    • 34248570203 scopus 로고    scopus 로고
    • High-density cultivation of oleaginous yeast Rhodosporidium toruloides Y4 in fed-batch culture
    • DOI 10.1016/j.enzmictec.2007.02.008, PII S0141022907000798
    • Li, Y., Zhao, Z. & Bai, F. High-density cultivation of oleaginous yeast Rhodosporidium toruloides Y4 in fed-batch culture. Enzyme Microb. Technol. 41, 312-317 (2007). (Pubitemid 46755886)
    • (2007) Enzyme and Microbial Technology , vol.41 , Issue.3 , pp. 312-317
    • Li, Y.1    Zhao, Z.2    Bai, F.3
  • 13
    • 0032768820 scopus 로고    scopus 로고
    • Affinity purification and characterization of a yeast epoxide hydrolase
    • DOI 10.1023/A:1005500407152
    • Botes, A. L. Afnity purifcation and characterization of a yeast epoxide hydrolase. Biotechnol. Lett. 21, 511-517 (1999). (Pubitemid 29349158)
    • (1999) Biotechnology Letters , vol.21 , Issue.6 , pp. 511-517
    • Botes, A.L.1
  • 14
    • 67649210765 scopus 로고    scopus 로고
    • Efects of biomass hydrolysis by-products on oleaginous yeast Rhodosporidium toruloides
    • Hu, C., Zhao, X., Zhao, J., Wu, S. & Zhao, Z. K. Efects of biomass hydrolysis by-products on oleaginous yeast Rhodosporidium toruloides. Bioresource Technol. 100, 4843-4847 (2009).
    • (2009) Bioresource Technol , vol.100 , pp. 4843-4847
    • Hu, C.1    Zhao, X.2    Zhao, J.3    Wu, S.4    Zhao, Z.K.5
  • 15
    • 80051681001 scopus 로고    scopus 로고
    • Lipids of oleaginous yeasts. Part II: Technology and potential applications
    • Papanikolaou, S. & Aggelis, G. Lipids of oleaginous yeasts. Part II: technology and potential applications. Eur. J. Lipid Sci. Tech. 113, 1052-1073 (2011).
    • (2011) Eur. J. Lipid Sci. Tech. , vol.113 , pp. 1052-1073
    • Papanikolaou, S.1    Aggelis, G.2
  • 16
    • 45549088326 scopus 로고    scopus 로고
    • The transcriptional landscape of the yeast genome defined by RNA sequencing
    • DOI 10.1126/science.1158441
    • Nagalakshmi, U. et al. The transcriptional landscape of the yeast genome defned by RNA sequencing. Science 320, 1344-1349 (2008). (Pubitemid 351929471)
    • (2008) Science , vol.320 , Issue.5881 , pp. 1344-1349
    • Nagalakshmi, U.1    Wang, Z.2    Waern, K.3    Shou, C.4    Raha, D.5    Gerstein, M.6    Snyder, M.7
  • 17
    • 70349636603 scopus 로고    scopus 로고
    • Next-generation tag sequencing for cancer gene expression profling
    • Morrissy, A. S. et al. Next-generation tag sequencing for cancer gene expression profling. Genome Res. 19, 1825-1835 (2009).
    • (2009) Genome Res , vol.19 , pp. 1825-1835
    • Morrissy, A.S.1
  • 18
    • 78651465142 scopus 로고    scopus 로고
    • The proteome analysis of oleaginous yeast Lipomyces starkeyi
    • Liu, H. et al. The proteome analysis of oleaginous yeast Lipomyces starkeyi. FEMS Yeast Res. 11, 42-51 (2011).
    • (2011) FEMS Yeast Res. , vol.11 , pp. 42-51
    • Liu, H.1
  • 19
    • 81555207963 scopus 로고    scopus 로고
    • Transcriptomic analyses during the transition from biomass production to lipid accumulation in the oleaginous yeast Yarrowia lipolytica
    • Morin, N. et al. Transcriptomic analyses during the transition from biomass production to lipid accumulation in the oleaginous yeast Yarrowia lipolytica. PLoS One 6, e27966 (2011).
    • (2011) PLoS One , vol.6
    • Morin, N.1
  • 20
    • 84857701617 scopus 로고    scopus 로고
    • Draf genome sequence and genetic transformation of the oleaginous alga Nannochloropis gaditana
    • Radakovits, R. et al. Draf genome sequence and genetic transformation of the oleaginous alga Nannochloropis gaditana. Nat Commun. 3, 686 (2012).
    • (2012) Nat Commun. , vol.3 , pp. 686
    • Radakovits, R.1
  • 22
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efcient alignment of short DNA sequences to the human genome
    • Langmead, B., Trapnell, C., Pop, M. & Salzberg, S. L. Ultrafast and memory-efcient alignment of short DNA sequences to the human genome. Genome Biol. 10, R25 (2009).
    • (2009) Genome Biol. , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 23
    • 0019836936 scopus 로고
    • Correlation of lipid accumulation in yeasts with possession of ATP:citrate lyase
    • Boulton, C. A. & Ratledge, C. Correlation of lipid accumulation in yeasts with possession of ATP: citrate lyase. J. Gen. Microbiol. 127, 169-176 (1981). (Pubitemid 12169885)
    • (1981) Journal of General Microbiology , vol.127 , Issue.1 , pp. 169-176
    • Boulton, C.A.1    Ratledge, C.2
  • 25
    • 84855249317 scopus 로고    scopus 로고
    • Alternative routes of acetyl-CoA synthesis identifed by comparative genomic analysis: Involvement in lipid production of oleaginous yeast and fungi
    • Vorapreeda, T., Tammarongtham, C., Cheevadhanarak, S. & Laoteng, K. Alternative routes of acetyl-CoA synthesis identifed by comparative genomic analysis: Involvement in lipid production of oleaginous yeast and fungi. Microbiology 158, 217-228 (2012).
    • (2012) Microbiology , vol.158 , pp. 217-228
    • Vorapreeda, T.1    Tammarongtham, C.2    Cheevadhanarak, S.3    Laoteng, K.4
  • 26
    • 34247383568 scopus 로고    scopus 로고
    • Structure of fungal fatty acid synthase and implications for iterative substrate shuttling
    • DOI 10.1126/science.1138248
    • Jenni, S. et al. Structure of fungal fatty acid synthase and implications for iterative substrate shuttling. Science 316, 254-261 (2007). (Pubitemid 46633098)
    • (2007) Science , vol.316 , Issue.5822 , pp. 254-261
    • Jenni, S.1    Leibundgut, M.2    Boehringer, D.3    Frick, C.4    Mikolasek, B.5    Ban, N.6
  • 27
    • 51349099946 scopus 로고    scopus 로고
    • Inhibition of the fungal fatty acid synthase type i multienzyme complex
    • Johansson, P. et al. Inhibition of the fungal fatty acid synthase type I multienzyme complex. Proc. Natl Acad. Sci. USA 105, 12803-12808 (2008).
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 12803-12808
    • Johansson, P.1
  • 29
    • 32044465506 scopus 로고    scopus 로고
    • TOR signaling in growth and metabolism
    • DOI 10.1016/j.cell.2006.01.016, PII S0092867406001085
    • Wullschleger, S., Loewith, R. & Hall, M. N. TOR signaling in growth and metabolism. Cell 124, 471-484 (2006). (Pubitemid 43199434)
    • (2006) Cell , vol.124 , Issue.3 , pp. 471-484
    • Wullschleger, S.1    Loewith, R.2    Hall, M.N.3
  • 31
    • 67651235863 scopus 로고    scopus 로고
    • A genome-wide screen for regulators of TORC1 in response to amino acid starvation reveals a conserved Npr2/3 complex
    • Biggins, S., Neklesa, T. K. & Davis, R. W. A genome-wide screen for regulators of TORC1 in response to amino acid starvation reveals a conserved Npr2/3 complex. PLoS Genet 5, e1000515 (2009).
    • (2009) PLoS Genet , vol.5
    • Biggins, S.1    Neklesa, T.K.2    Davis, R.W.3
  • 32
    • 0032870365 scopus 로고    scopus 로고
    • The role of malic enzyme in the regulation of lipid accumulation in filamentous fungi
    • Wynn, J. P., Hamid, A. B. A. & Ratledge, C. Te role of malic enzyme in the regulation of lipid accumulation in flamentous fungi. Microbiology 145, 1911-1917 (1999). (Pubitemid 29396921)
    • (1999) Microbiology , vol.145 , Issue.8 , pp. 1911-1917
    • Wynn, J.P.1    Hamid, A.B.A.2    Ratledge, C.3
  • 33
    • 34447550704 scopus 로고    scopus 로고
    • Malic enzyme: The controlling activity for lipid production? Overexpression of malic enzyme in Mucor circinelloides leads to a 2.5-fold increase in lipid accumulation
    • DOI 10.1099/mic.0.2006/002683-0
    • Zhang, Y., Adams, I. P. & Ratledge, C. Malic enzyme: the controlling activity for lipid production? Overexpression of malic enzyme in Mucor circinelloides leads to a 2.5-fold increase in lipid accumulation. Microbiology 153, 2013-2025 (2007). (Pubitemid 47074057)
    • (2007) Microbiology , vol.153 , Issue.7 , pp. 2013-2025
    • Zhang, Y.1    Adams, I.P.2    Ratledge, C.3
  • 34
    • 65949095803 scopus 로고    scopus 로고
    • Autophagy regulates lipid metabolism
    • Singh, R. et al. Autophagy regulates lipid metabolism. Nature 458, 1131-1135 (2009).
    • (2009) Nature , vol.458 , pp. 1131-1135
    • Singh, R.1
  • 35
    • 70449672939 scopus 로고    scopus 로고
    • Comparative proteomic analysis of Rhodosporidium toruloides during lipid accumulation
    • Liu, H. et al. Comparative proteomic analysis of Rhodosporidium toruloides during lipid accumulation. Yeast 26, 553-566 (2009).
    • (2009) Yeast , vol.26 , pp. 553-566
    • Liu, H.1
  • 36
    • 34547103034 scopus 로고    scopus 로고
    • The Metarhizium anisopliae perilipin homolog MPL1 regulates lipid metabolism, appressorial turgor pressure, and virulence
    • DOI 10.1074/jbc.M609592200
    • Wang, C. & St. Leger, R. J. Te Metarhizium anisopliae perilipin homolog MPL1 regulates lipid metabolism, appressorial turgor pressure, and virulence. J. Biol. Chem. 282, 21110-21115 (2007). (Pubitemid 47099932)
    • (2007) Journal of Biological Chemistry , vol.282 , Issue.29 , pp. 21110-21115
    • Wang, C.1    St. Leger, R.J.2
  • 37
    • 66349128492 scopus 로고    scopus 로고
    • PAT proteins, an ancient family of lipid droplet proteins that regulate cellular lipid stores
    • Bickel, P. E., Tansey, J. T. & Welte, M. A. PAT proteins, an ancient family of lipid droplet proteins that regulate cellular lipid stores. Biochim. Biophys. Acta 1791, 419-440 (2009).
    • (2009) Biochim. Biophys. Acta , vol.1791 , pp. 419-440
    • Bickel, P.E.1    Tansey, J.T.2    Welte, M.A.3
  • 38
    • 0021164237 scopus 로고
    • Influence of nitrogen metabolism on lipid accumulation by Rhodosporidium toruloides CBS 14
    • Evans, C. T. & Ratledge, C. Infuence of nitrogen metabolism on lipid accumulation by Rhodosporidium toruloides CBS 14. J. Gen. Microbiol. 130, 1705-1710 (1984). (Pubitemid 14058784)
    • (1984) Journal of General Microbiology , vol.130 , Issue.7 , pp. 1705-1710
    • Evans, C.T.1    Ratledge, C.2
  • 39
    • 0022330624 scopus 로고
    • Enrichment of mutants of Rhodosporidium toruloides by the use of inositol starvation
    • DOI 10.1002/jobm.3620251020
    • Tully, M. Enrichment of mutants of Rhodosporidium toruloides by the use of inositol starvation. J. Basic Microbiol 25, 683-686 (1985). (Pubitemid 16151378)
    • (1985) Journal of Basic Microbiology , vol.25 , Issue.10 , pp. 683-686
    • Tully, M.1
  • 40
    • 0022236548 scopus 로고
    • Transformation of Rhodosporidium toruloides
    • DOI 10.1016/0378-1119(85)90178-7
    • Tully, M. & Gilbert, H. J. Transformation of Rhodosporidium toruloides. Gene 36, 235-240 (1985). (Pubitemid 16249712)
    • (1985) Gene , vol.36 , Issue.3 , pp. 235-240
    • Tully, M.1    Gilbert, H.J.2
  • 41
    • 77956795100 scopus 로고    scopus 로고
    • ATP-citrate lyase is required for production of cytosolic acetyl coenzyme A and development in Aspergillus nidulans
    • Hynes, M. J. & Murray S. L. ATP-citrate lyase is required for production of cytosolic acetyl coenzyme A and development in Aspergillus nidulans. Eukaryot Cell 9, 1039-1048 (2010).
    • (2010) Eukaryot Cell , vol.9 , pp. 1039-1048
    • Hynes, M.J.1    Murray, S.L.2
  • 43
    • 33645092384 scopus 로고    scopus 로고
    • Lipid particle composition of the yeast Yarrowia lipolytica depends on the carbon source
    • Athenstaedt, K. et al. Lipid particle composition of the yeast Yarrowia lipolytica depends on the carbon source. Proteomics 6, 1450-1459 (2006).
    • (2006) Proteomics , vol.6 , pp. 1450-1459
    • Athenstaedt, K.1
  • 45
    • 0033540030 scopus 로고    scopus 로고
    • The TOR signalling pathway controls nuclear localization of nutrient-regulated transcription factors
    • Beck, T. & Hall, M. N. Te TOR signalling pathway controls nuclear localization of nutrient-regulated transcription factors. Nature 402, 689-692 (1999). (Pubitemid 129516342)
    • (1999) Nature , vol.402 , Issue.6762 , pp. 689-692
    • Beck, T.1    Hall, M.N.2
  • 46
    • 78649920352 scopus 로고    scopus 로고
    • The GATA-type transcriptional activator Gat1 regulates nitrogen uptake and metabolism in the human pathogen Cryptococcus neoformans
    • Kmetzsch, L. et al. The GATA-type transcriptional activator Gat1 regulates nitrogen uptake and metabolism in the human pathogen Cryptococcus neoformans. Fungal Genet. Biol. 48, 192-199 (2011).
    • (2011) Fungal Genet. Biol. , vol.48 , pp. 192-199
    • Kmetzsch, L.1
  • 48
    • 42049102882 scopus 로고    scopus 로고
    • 'Designer' biodiesel: Optimizing fatty ester composition to improve fuel properties
    • Knothe, G. 'Designer' biodiesel: optimizing fatty ester composition to improve fuel properties. Energy Fuels 22, 1358-1364 (2008).
    • (2008) Energy Fuels , vol.22 , pp. 1358-1364
    • Knothe, G.1
  • 51
    • 79959864290 scopus 로고    scopus 로고
    • Purifcation and characterization of a â-1,3-glucomannanase expressed in Pichia pastoris
    • Yang, F., Zhang, S., Jin, G., Lin, X. & Zhao, Z. K. Purifcation and characterization of a â-1,3-glucomannanase expressed in Pichia pastoris. Enzyme Microb. Technol. 49, 223-228 (2011).
    • (2011) Enzyme Microb. Technol. , vol.49 , pp. 223-228
    • Yang, F.1    Zhang, S.2    Jin, G.3    Lin, X.4    Zhao, Z.K.5
  • 52
    • 79551551431 scopus 로고    scopus 로고
    • High-quality RNA preparation from Rhodosporidium toruloides and cDNA library construction therewith
    • Yang, F., Tan, H., Zhou, Y, Lin, X. & Zhang, S. High-quality RNA preparation from Rhodosporidium toruloides and cDNA library construction therewith. Mol. Biotechnol. 47, 144-151 (2010).
    • (2010) Mol. Biotechnol. , vol.47 , pp. 144-151
    • Yang, F.1    Tan, H.2    Zhou, Y.3    Lin, X.4    Zhang, S.5
  • 53
    • 75649124547 scopus 로고    scopus 로고
    • De novo assembly of human genomes with massively parallel short read sequencing
    • Li, R. et al. De novo assembly of human genomes with massively parallel short read sequencing. Genome Res. 20, 265-272 (2009).
    • (2009) Genome Res , vol.20 , pp. 265-272
    • Li, R.1
  • 54
    • 0036226603 scopus 로고    scopus 로고
    • BLAT\the BLAST-like alignment tool
    • Kent, W. J. BLAT\the BLAST-like alignment tool. Genome Res. 12, 656-664 (2002).
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 55
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-Seq
    • Trapnell, C., Pachter, L. & Salzberg, S. L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 56
    • 77952123055 scopus 로고    scopus 로고
    • Transcript assembly and quantifcation by RNA-Seq reveals unannotated transcripts and isoform switching during cell diferentiation
    • Trapnell, C. et al. Transcript assembly and quantifcation by RNA-Seq reveals unannotated transcripts and isoform switching during cell diferentiation. Nat. Biotechnol. 28, 511-515 (2010).
    • (2010) Nat. Biotechnol. , vol.28 , pp. 511-515
    • Trapnell, C.1
  • 57
    • 34147180390 scopus 로고    scopus 로고
    • Creating a honey bee consensus gene set
    • Elsik, C. G. et al. Creating a honey bee consensus gene set. Genome Biol. 8, R13 (2007).
    • (2007) Genome Biol , vol.8
    • Elsik, C.G.1
  • 58
    • 0030681260 scopus 로고    scopus 로고
    • The significance of digital gene expression profiles
    • Audic, S. & Claverie, J.-M. Te signifcance of digital gene expression profles. Genome Res. 7, 986-995 (1997). (Pubitemid 27487763)
    • (1997) Genome Research , vol.7 , Issue.10 , pp. 986-995
    • Audic, S.1    Claverie, J.-M.2
  • 59
    • 35448965232 scopus 로고    scopus 로고
    • Optimization of fltering criterion for SEQUEST database searching to improve proteome coverage in shotgun proteomics
    • Jiang, X., Jiang, X., Han, G., Ye, M. & Zou, H. Optimization of fltering criterion for SEQUEST database searching to improve proteome coverage in shotgun proteomics. BMC Bioinformatics 8, 323 (2007).
    • (2007) BMC Bioinformatics , vol.8 , pp. 323
    • Jiang, X.1    Jiang, X.2    Han, G.3    Ye, M.4    Zou, H.5
  • 60
    • 77954205753 scopus 로고    scopus 로고
    • PepC: Proteomics sofware for identifying diferentially expressed proteins based on spectral counting
    • Heinecke, N. L., Pratt, B. S., Vaisar, T. & Becker, L. PepC: proteomics sofware for identifying diferentially expressed proteins based on spectral counting. Bioinformatics 26, 1574-1575 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 1574-1575
    • Heinecke, N.L.1    Pratt, B.S.2    Vaisar, T.3    Becker, L.4


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