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Volumn 26, Issue 10, 2009, Pages 553-566

Comparative proteomic analysis of Rhodosporidium toruloides during lipid accumulation

Author keywords

2D LC MS MS; Nitrogen deficiency; Oleaginous microorganism; Proteomics; Rhodosporidium toruloides

Indexed keywords

NITROGEN;

EID: 70449672939     PISSN: 0749503X     EISSN: 10970061     Source Type: Journal    
DOI: 10.1002/yea.1706     Document Type: Article
Times cited : (70)

References (55)
  • 2
    • 33645092384 scopus 로고    scopus 로고
    • Lipid particle composition of the yeast Yarrowia lipolytica depends on the carbon source
    • Athenstaedt K, Jolivet P, Boulard C, et al. 2006. Lipid particle composition of the yeast Yarrowia lipolytica depends on the carbon source. Proteomics 6: 1450-1459.
    • (2006) Proteomics , vol.6 , pp. 1450-1459
    • Athenstaedt, K.1    Jolivet, P.2    Boulard, C.3
  • 4
    • 57449110525 scopus 로고    scopus 로고
    • Control of lipid accumulation in the yeast Yarrowia lipolytica
    • Beopoulos A, Mrozova Z, Thevenieau F, et al. 2008. Control of lipid accumulation in the yeast Yarrowia lipolytica. Appl Environ Microbiol 74: 7779-7789.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 7779-7789
    • Beopoulos, A.1    Mrozova, Z.2    Thevenieau, F.3
  • 5
    • 0020608654 scopus 로고
    • Use of transition studies in continuous cultures of Lipomyces starkeyi, an oleaginous yeast, to investigate the physiology of lipid accumulation
    • Boulton CA, Ratledge C. 1983. Use of transition studies in continuous cultures of Lipomyces starkeyi, an oleaginous yeast, to investigate the physiology of lipid accumulation. J Gen Microbiol 129: 2871-2876.
    • (1983) J Gen Microbiol , vol.129 , pp. 2871-2876
    • Boulton, C.A.1    Ratledge, C.2
  • 6
    • 3242888005 scopus 로고    scopus 로고
    • Nitrogen versus carbon use in prokaryotic genomes and proteomes
    • Bragg JG, Hyder CL. 2004. Nitrogen versus carbon use in prokaryotic genomes and proteomes. Proc R Soc Lond B 271: S374-377.
    • (2004) Proc R Soc Lond B , vol.271
    • Bragg, J.G.1    Hyder, C.L.2
  • 7
    • 0037046271 scopus 로고    scopus 로고
    • Carbon catabolite repression in bacteria: Choice of the carbon source and autoregulatory limitation of sugar utilization
    • DOI 10.1016/S0378-1097(02)00559-1, PII S0378109702005591
    • Bruckner R, Titgemeyer F. 2002. Carbon catabolite repression in bacteria: choice of the carbon source and autoregulatory limitation of sugar utilization. FEMS Microbiol Lett 209: 141-148. (Pubitemid 34465584)
    • (2002) FEMS Microbiology Letters , vol.209 , Issue.2 , pp. 141-148
    • Bruckner, R.1    Titgemeyer, F.2
  • 9
    • 1542350073 scopus 로고    scopus 로고
    • Role of Transcriptional Regulation in Controlling Fluxes in Central Carbon Metabolism of Saccharomyces cerevisiae: A chemostat culture study
    • DOI 10.1074/jbc.M309578200
    • Daran-Lapujade P, Jansen MLA, Daran JM, et al. 2004. Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae - a chemostat culture study. J Biol Chem 279: 9125-9138. (Pubitemid 38304859)
    • (2004) Journal of Biological Chemistry , vol.279 , Issue.10 , pp. 9125-9138
    • Daran-Lapujade, P.1    Jansen, M.L.A.2    Daran, J.-M.3    Van Gulik, W.4    De Winde, J.H.5    Pronk, J.T.6
  • 10
    • 0035941209 scopus 로고    scopus 로고
    • NADP-glutamate dehydrogenase isoenzymes of Saccharomyces cerevisiae: Purification, kinetic properties, and physiological roles
    • DOI 10.1074/jbc.M107986200
    • DeLuna A, Avendano A, Riego L, Gonzalez A. 2001. NADP-glutamate dehydrogenase isoenzymes of Saccharomyces cerevisiae - purification, kinetic properties, and physiological roles. J Biol Chem 276: 43775-43783. (Pubitemid 37383942)
    • (2001) Journal of Biological Chemistry , vol.276 , Issue.47 , pp. 43775-43783
    • Deluna, A.1    Avendano, A.2    Riego, L.3    Gonzalez, A.4
  • 11
    • 0024389333 scopus 로고
    • Structure and function of vacuolar class of ATP-driven proton pumps
    • Forgac M. 1989. Structure and function of vacuolar class of ATP driven proton pumps. Physiol Rev 69: 765-796. (Pubitemid 19184849)
    • (1989) Physiological Reviews , vol.69 , Issue.3 , pp. 765-796
    • Forgac, M.1
  • 12
    • 0036545614 scopus 로고    scopus 로고
    • Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae
    • Griffin TJ, Gygi SP, Ideker T, et al. 2002. Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae. Mol Cell Proteom 1: 323-333.
    • (2002) Mol Cell Proteom , vol.1 , pp. 323-333
    • Griffin, T.J.1    Gygi, S.P.2    Ideker, T.3
  • 13
    • 4444236379 scopus 로고    scopus 로고
    • A two-dimensional electrophoresis map of Chinese hamster ovary cell proteins based on fluorescence staining
    • Hayduk EJ, Choe LH, Lee KH. 2004. A two-dimensional electrophoresis map of Chinese hamster ovary cell proteins based on fluorescence staining. Electrophoresis 25: 2545-2556.
    • (2004) Electrophoresis , vol.25 , pp. 2545-2556
    • Hayduk, E.J.1    Choe, L.H.2    Lee, K.H.3
  • 14
    • 70449627437 scopus 로고    scopus 로고
    • The effect of carbon and nitrogen limitation on the yeast proteome studied by metabolic stable isotope labeling and mass spectrometry
    • Heck A, Kolkman A, Daran-Lapujade P, et al. 2005. The effect of carbon and nitrogen limitation on the yeast proteome studied by metabolic stable isotope labeling and mass spectrometry. Mol Cell Proteom 4: S238-238.
    • (2005) Mol Cell Proteom , vol.4
    • Heck, A.1    Kolkman, A.2    Daran-Lapujade, P.3
  • 15
    • 70449646590 scopus 로고    scopus 로고
    • Adaptation of the Saccharomyces cerevisiae proteome to nutrient limitations studied by metabolic stable isotope labeling and mass spectrometry
    • Heck AJR. 2005. Adaptation of the Saccharomyces cerevisiae proteome to nutrient limitations studied by metabolic stable isotope labeling and mass spectrometry. J Biotechnol 118: S22-23.
    • (2005) J Biotechnol , vol.118
    • Heck, A.J.R.1
  • 16
    • 33947572920 scopus 로고    scopus 로고
    • Development of efficient protein extraction methods for shotgun proteome analysis of formalin-fixed tissues
    • DOI 10.1021/pr0605318
    • Jiang XG, Jiang XN, Feng S, et al. 2007. Development of efficient protein extraction methods for shotgun proteome analysis of formalin-fixed tissues. J Proteome Res 6: 1038-1047. (Pubitemid 46480468)
    • (2007) Journal of Proteome Research , vol.6 , Issue.3 , pp. 1038-1047
    • Jiang, X.1    Jiang, X.2    Feng, S.3    Tian, R.4    Ye, M.5    Zou, H.6
  • 17
    • 3543121341 scopus 로고    scopus 로고
    • Quantification in proteomics through stable isotope coding: A review
    • DOI 10.1021/pr0340734
    • Julka S, Regnier F. 2004. Quantification in proteomics through stable isotope coding: a review. J Proteome Res 3: 350-363. (Pubitemid 39207339)
    • (2004) Journal of Proteome Research , vol.3 , Issue.3 , pp. 350-363
    • Julka, S.1    Regnier, F.2
  • 18
    • 44449113179 scopus 로고    scopus 로고
    • Ypt1p is essential for retrograde Golgi-ER transport and for Golgi maintenance in S. cerevisiae
    • DOI 10.1242/jcs.016998
    • Kamena F, Diefenbacher M, Kilchert C, et al. 2008. Ypt1p is essential for retrograde Golgi-ER transport and for Golgi maintenance in S. cerevisiae. J Cell Sci 121: 1293-1302. (Pubitemid 351753513)
    • (2008) Journal of Cell Science , vol.121 , Issue.8 , pp. 1293-1302
    • Kamena, F.1    Diefenbacher, M.2    Kilchert, C.3    Schwarz, H.4    Spang, A.5
  • 20
    • 8744239187 scopus 로고    scopus 로고
    • Strategic proteome analysis of Candida magnoliae with an unsequenced genome
    • Kim HJ, Lee DY, Lee DH, et al. 2004. Strategic proteome analysis of Candida magnoliae with an unsequenced genome. Proteomics 4: 3588-3599.
    • (2004) Proteomics , vol.4 , pp. 3588-3599
    • Kim, H.J.1    Lee, D.Y.2    Lee, D.H.3
  • 21
    • 1142273243 scopus 로고    scopus 로고
    • Rapid estimation of lipids in oleaginous fungi and yeasts using Nile red fluorescence
    • DOI 10.1016/j.mimet.2003.10.018
    • Kimura K, Yamaoka M, Kamisaka Y. 2004. Rapid estimation of lipids in oleaginous fungi and yeasts using Nile red fluorescence. J Microbiol Methods 56: 331-338. (Pubitemid 38210337)
    • (2004) Journal of Microbiological Methods , vol.56 , Issue.3 , pp. 331-338
    • Kimura, K.1    Yamaoka, M.2    Kamisaka, Y.3
  • 22
    • 33745459776 scopus 로고    scopus 로고
    • Proteome analysis of yeast response to various nutrient limitations
    • Kolkman A, Daran-Lapujade P, Fullaondo A, et al. 2006. Proteome analysis of yeast response to various nutrient limitations. Mol Syst Biol 2: 2006-2026.
    • (2006) Mol Syst Biol , vol.2 , pp. 2006-2026
    • Kolkman, A.1    Daran-Lapujade, P.2    Fullaondo, A.3
  • 23
    • 14644395537 scopus 로고    scopus 로고
    • Comparative proteome analysis of Saccharomyces cerevisiae grown in chemostat cultures limited for glucose or ethanol
    • DOI 10.1074/mcp.M400087-MCP200
    • Kolkman A, Olsthoorn MMA, Heeremans CEM, et al. 2005. Comparative proteome analysis of Saccharomyces cerevisiae grown in chemostat cultures limited for glucose or ethanol. Mol Cell Proteom 4: 1-11. (Pubitemid 40309321)
    • (2005) Molecular and Cellular Proteomics , vol.4 , Issue.1 , pp. 1-11
    • Kolkman, A.1    Olsthoorn, M.M.A.2    Heeremans, C.E.M.3    Heck, A.J.R.4    Slijper, M.5
  • 24
    • 0020475449 scopus 로고
    • A simple method for displaying the hydropathic character of a protein
    • Kyte J, Doolittle RF. 1982. A simple method for displaying the hydropathic character of a protein. J Mol Biol 157: 105-132.
    • (1982) J Mol Biol , vol.157 , pp. 105-132
    • Kyte, J.1    Doolittle, R.F.2
  • 25
    • 33746347427 scopus 로고    scopus 로고
    • Optimization of Culture Conditions for Lipid Production by Rhodosporidium toruloides
    • DOI 10.1016/S1872-2075(06)60050-2, PII S1872207506600502
    • Li YH, Zhao ZB, Bai FW. 2006. Optimization of culture conditions for lipid production by Rhodosporidium toruloides. Chin J Biotech 22: 650-656. (Pubitemid 44118902)
    • (2006) Chinese Journal of Biotechnology , vol.22 , Issue.4 , pp. 650-656
    • Li, Y.-H.1    Liu, B.2    Zhao, Z.-B.3    Bai, F.-W.4
  • 26
    • 34248570203 scopus 로고    scopus 로고
    • High-density cultivation of oleaginous yeast Rhodosporidium toruloides Y4 in fed-batch culture
    • Li YH, Zhao ZB, Bai FW. 2007. High-density cultivation of oleaginous yeast Rhodosporidium toruloides Y4 in fed-batch culture. Enzyme Microb Technol 41: 312-317.
    • (2007) Enzyme Microb Technol , vol.41 , pp. 312-317
    • Li, Y.H.1    Zhao, Z.B.2    Bai, F.W.3
  • 27
    • 34547975071 scopus 로고    scopus 로고
    • Biodiesel production by direct methanolysis of oleaginous microbial biomass
    • DOI 10.1002/jctb.1744
    • Liu B, Zhao ZB. 2007. Biodiesel production by direct methanolysis of oleaginous microbial biomass. J Chem Technol Biotechnol 82: 775-780. (Pubitemid 47272347)
    • (2007) Journal of Chemical Technology and Biotechnology , vol.82 , Issue.8 , pp. 775-780
    • Liu, B.1    Zhao, Z.2
  • 28
    • 0037094434 scopus 로고    scopus 로고
    • Nitrogen regulation in Saccharomyces cerevisiae
    • Magasanik B, Kaiser CA. 2002. Nitrogen regulation in Saccharomyces cerevisiae. Gene 290: 1-18.
    • (2002) Gene , vol.290 , pp. 1-18
    • Magasanik, B.1    Kaiser, C.A.2
  • 29
    • 53049108345 scopus 로고    scopus 로고
    • S -Adenosyl-L-homocysteine hydrolase, key enzyme of methylation metabolism, regulates phosphatidylcholine synthesis and triacylglycerol homeostasis in yeast
    • Malanovic N, Streith I, Wolinski H, et al. 2008. S -Adenosyl-L- homocysteine hydrolase, key enzyme of methylation metabolism, regulates phosphatidylcholine synthesis and triacylglycerol homeostasis in yeast. J Biol Chem 283: 23989-23999.
    • (2008) J Biol Chem , vol.283 , pp. 23989-23999
    • Malanovic, N.1    Streith, I.2    Wolinski, H.3
  • 31
    • 0034903123 scopus 로고    scopus 로고
    • The biogenesis and functions of lipid bodies in animals, plants and microorganisms
    • Murphy DJ. 2001. The biogenesis and functions of lipid bodies in animals, plants and microorganisms. Prog Lipid Res 40: 325-438.
    • (2001) Prog Lipid Res , vol.40 , pp. 325-438
    • Murphy, D.J.1
  • 32
    • 43949117883 scopus 로고    scopus 로고
    • 15N metabolic labelling
    • DOI 10.1002/pmic.200700398
    • Pandhal J, Snijders APL, Wright PC, Biggs CA. 2008. A cross-species quantitative proteomic study of salt adaptation in a halotolerant environmental isolate using N-15 metabolic labelling. Proteomics 8: 2266-2284. (Pubitemid 351898032)
    • (2008) Proteomics , vol.8 , Issue.11 , pp. 2266-2284
    • Pandhal, J.1    Snijders, A.P.L.2    Wright, P.C.3    Biggs, C.A.4
  • 34
    • 0036865034 scopus 로고    scopus 로고
    • Regulation of lipid accumulation in oleaginous micro-organisms
    • DOI 10.1042/BST0301047
    • Ratledge C. 2002. Regulation of lipid accumulation in oleaginous micro-organisms. Biochem Soc Trans 30: 1047-1050. (Pubitemid 36002403)
    • (2002) Biochemical Society Transactions , vol.30 , Issue.6 , pp. 1047-1050
    • Ratledge, C.1
  • 35
    • 0036359804 scopus 로고    scopus 로고
    • The biochemistry and molecular biology of lipid accumulation in oleaginous microorganisms
    • DOI 10.1016/S0065-2164(02)51000-5
    • Ratledge C, Wynn JP. 2002. The biochemistry and molecular biology of lipid accumulation in oleaginous microorganisms. Adv Appl Microbiol 51: 1-51. (Pubitemid 34984904)
    • (2002) Advances in Applied Microbiology , vol.51 , pp. 1-51
    • Ratledge, C.1    Wynn, J.P.2
  • 37
    • 0041358797 scopus 로고    scopus 로고
    • Sample preparation for two-dimensional gel electrophoresis
    • DOI 10.1002/pmic.200300471
    • Shaw MM, Riederer BM. 2003. Sample preparation for two-dimensional gel electrophoresis. Proteomics 3: 1408-1417. (Pubitemid 37048065)
    • (2003) Proteomics , vol.3 , Issue.8 , pp. 1408-1417
    • Shaw, M.M.1    Riederer, B.M.2
  • 38
    • 41549143168 scopus 로고    scopus 로고
    • +- ATPase and mitochondrial function in tolerance to air-drying stress revealed by genome-wide screening of Saccharomyces cerevisiae deletion strains
    • +- ATPase and mitochondrial function in tolerance to air-drying stress revealed by genome-wide screening of Saccharomyces cerevisiae deletion strains. Yeast 25: 179-190.
    • (2008) Yeast , vol.25 , pp. 179-190
    • Shima, J.1    Ando, A.2    Takagi, H.3
  • 39
    • 0038182336 scopus 로고    scopus 로고
    • Triacylglycerol biosynthesis in yeast
    • Sorger D, Daum G. 2003. Triacylglycerol biosynthesis in yeast. Appl Microbiol Biotechnol 61: 289-299.
    • (2003) Appl Microbiol Biotechnol , vol.61 , pp. 289-299
    • Sorger, D.1    Daum, G.2
  • 41
    • 70449637615 scopus 로고    scopus 로고
    • Proteome analysis of oxidative stress response to cumene hydroperoxide in Saccharomyces cerevisiae
    • Tuli L, Martins A, Sha W, et al. 2007. Proteome analysis of oxidative stress response to cumene hydroperoxide in Saccharomyces cerevisiae. Mol Cell Proteom 6: 46-46
    • (2007) Mol Cell Proteom , vol.6 , pp. 46-46
    • Tuli, L.1    Martins, A.2    Sha, W.3
  • 42
    • 0026545550 scopus 로고
    • Surface-structure and properties of plant seed oil bodies
    • Tzen JTC, Huang AHC. 1992. Surface-structure and properties of plant seed oil bodies. J Cell Biol 117: 327-335.
    • (1992) J Cell Biol , vol.117 , pp. 327-335
    • Tzen, J.T.C.1    Huang, A.H.C.2
  • 45
    • 34447115260 scopus 로고    scopus 로고
    • Palmitoylated proteins: Purification and identification
    • Wan J, Roth AF, Bailey AO, Davis NG. 2007. Palmitoylated proteins: purification and identification. Nat Protoc 2: 1573-1584.
    • (2007) Nat Protoc , vol.2 , pp. 1573-1584
    • Wan, J.1    Roth, A.F.2    Bailey, A.O.3    Davis, N.G.4
  • 46
    • 34548590391 scopus 로고    scopus 로고
    • Capillary trap column with strong cation-exchange monolith for automated shotgun proteome analysis
    • DOI 10.1021/ac070736f
    • Wang FJ, Dong J, Jiang XG, et al. 2007. Capillary trap column with strong cation-exchange monolith for automated shotgun proteome analysis. Anal Chem 79: 6599-6606. (Pubitemid 47395044)
    • (2007) Analytical Chemistry , vol.79 , Issue.17 , pp. 6599-6606
    • Wang, F.1    Dong, J.2    Jiang, X.3    Ye, M.4    Zou, H.5
  • 49
    • 0021355340 scopus 로고
    • A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids
    • Wessel D, Flugge UI. 1984. A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids. Anal Biochem 138: 141-143. (Pubitemid 14146660)
    • (1984) Analytical Biochemistry , vol.138 , Issue.1 , pp. 141-143
    • Wessel, D.1    Flugge, U.I.2
  • 50
    • 0037206903 scopus 로고    scopus 로고
    • Effect of prickly pear (Opuntia robusta) on glucose- And lipid-metabolism in non-diabetics with hyperlipidemia - a pilot study
    • Wolfram RM, Kritz H, Efthimiou Y, et al. 2002. Effect of prickly pear (Opuntia robusta) on glucose and lipid metabolism in non-diabetics with hyperlipidemia - a pilot study. Wien Klin Wochenschr 114: 840-846. (Pubitemid 35356122)
    • (2002) Wiener Klinische Wochenschrift , vol.114 , Issue.19-20 , pp. 840-846
    • Wolfram, R.M.1    Kritz, H.2    Efthimiou, Y.3    Stomatopoulos, J.4    Sinzinger, H.5
  • 51
    • 34249938957 scopus 로고    scopus 로고
    • Recent advances in high-throughput quantitative bioanalysis by LC-MS/MS
    • DOI 10.1016/j.jpba.2007.02.006, PII S0731708507001239, Hyphenated Techniques in Pharmaceutical and Biomedical Analysis 2006
    • Xu RNX, Fan LM, Rieser MJ, El-Shourbagy TA. 2007. Recent advances in high-throughput quantitative bioanalysis by LC-MS/MS. J Pharm Biomed Anal 44: 342-355. (Pubitemid 46880094)
    • (2007) Journal of Pharmaceutical and Biomedical Analysis , vol.44 , Issue.2 , pp. 342-355
    • Xu, R.N.1    Fan, L.2    Rieser, M.J.3    El-Shourbagy, T.A.4
  • 53
    • 33746762234 scopus 로고    scopus 로고
    • Proteome analysis of cellular response of Pseudomonas putida KT2440 to tetracycline stress
    • Yun SH, Kim YH, Joo EJ, et al. 2006. Proteome analysis of cellular response of Pseudomonas putida KT2440 to tetracycline stress. Curr Microbiol 53: 95-101.
    • (2006) Curr Microbiol , vol.53 , pp. 95-101
    • Yun, S.H.1    Kim, Y.H.2    Joo, E.J.3
  • 54
    • 0038175144 scopus 로고    scopus 로고
    • GoMiner: A resource for biological interpretation of genomic and proteomic data
    • Zeeberg BR, Feng WM,Wang G, et al. 2003. GoMiner: a resource for biological interpretation of genomic and proteomic data. Genome Biol 4: R28.
    • (2003) Genome Biol , vol.4
    • Zeeberg, B.R.1    Feng, W.M.2    Wang, G.3
  • 55
    • 54549094778 scopus 로고    scopus 로고
    • Medium optimization for lipid production through co-fermentation of glucose and xylose by the oleaginous yeast Lipomyces starkeyi
    • Zhao X, Kong XL, Hua YY, et al. 2008. Medium optimization for lipid production through co-fermentation of glucose and xylose by the oleaginous yeast Lipomyces starkeyi . Eur J Lipid Sci Technol 110: 405-412.
    • (2008) Eur J Lipid Sci Technol , vol.110 , pp. 405-412
    • Zhao, X.1    Kong, X.L.2    Hua, Y.Y.3


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