-
1
-
-
0035810898
-
Genetic drift and within-host metapopulation dynamics of HIV-1 infection
-
Frost SD, Dumaurier MJ, Wain-Hobson S, Brown AJ, (2001) Genetic drift and within-host metapopulation dynamics of HIV-1 infection. Proc Natl Acad Sci USA 98: 6975-6980 Available: http://www.pnas.org/content/98/12/6975.short.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 6975-6980
-
-
Frost, S.D.1
Dumaurier, M.J.2
Wain-Hobson, S.3
Brown, A.J.4
-
2
-
-
0028969816
-
Transfer of HIV-1-specific cytotoxic T lymphocytes to an AIDS patient leads to selection for mutant HIV variants and subsequent disease progression
-
Koenig S, Conley AJ, Brewah YA, Jones GM, Leath S, et al. (1995) Transfer of HIV-1-specific cytotoxic T lymphocytes to an AIDS patient leads to selection for mutant HIV variants and subsequent disease progression. Nature medicine 1: 330-336.
-
(1995)
Nature Medicine
, vol.1
, pp. 330-336
-
-
Koenig, S.1
Conley, A.J.2
Brewah, Y.A.3
Jones, G.M.4
Leath, S.5
-
3
-
-
79958104621
-
Intercompartmental recombination of HIV-1 contributes to env intrahost diversity and modulates viral tropism and sensitivity to entry inhibitors
-
doi:10.1128/JVI.00131-11
-
Brown RJP, Peters PJ, Caron C, Gonzalez-Perez MP, Stones L, et al. (2011) Intercompartmental recombination of HIV-1 contributes to env intrahost diversity and modulates viral tropism and sensitivity to entry inhibitors. J Virol 85: 6024-6037 doi:10.1128/JVI.00131-11.
-
(2011)
J Virol
, vol.85
, pp. 6024-6037
-
-
Brown, R.J.P.1
Peters, P.J.2
Caron, C.3
Gonzalez-Perez, M.P.4
Stones, L.5
-
4
-
-
13744260977
-
Semen-specific genetic characteristics of human immunodeficiency virus type 1 env
-
doi:10.1128/JVI.79.3.1734-1742.2005
-
Pillai SK, Good B, Pond SK, Wong JK, Strain MC, et al. (2005) Semen-specific genetic characteristics of human immunodeficiency virus type 1 env. J Virol 79: 1734-1742 doi:10.1128/JVI.79.3.1734-1742.2005.
-
(2005)
J Virol
, vol.79
, pp. 1734-1742
-
-
Pillai, S.K.1
Good, B.2
Pond, S.K.3
Wong, J.K.4
Strain, M.C.5
-
5
-
-
53849101444
-
Estimating selection pressures on HIV-1 using phylogenetic likelihood models
-
doi:10.1002/sim.3192
-
Kosakovsky Pond SL, Poon AFY, Zárate S, Smith DM, Little SJ, et al. (2008) Estimating selection pressures on HIV-1 using phylogenetic likelihood models. Statistics in medicine 27: 4779-4789 doi:10.1002/sim.3192.
-
(2008)
Statistics in Medicine
, vol.27
, pp. 4779-4789
-
-
Kosakovsky Pond, S.L.1
Poon, A.F.Y.2
Zárate, S.3
Smith, D.M.4
Little, S.J.5
-
6
-
-
17544386547
-
Natural selection and the organ-specific differentiation of HIV-1 V3 hypervariable region
-
Sanjuán R, Codoñer FM, Moya A, Elena SF, (2004) Natural selection and the organ-specific differentiation of HIV-1 V3 hypervariable region. Evolution 58: 1185-1194.
-
(2004)
Evolution
, vol.58
, pp. 1185-1194
-
-
Sanjuán, R.1
Codoñer, F.M.2
Moya, A.3
Elena, S.F.4
-
7
-
-
44649102135
-
Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection
-
doi:10.1073/pnas.0802203105
-
Keele BF, Giorgi EE, Salazar-Gonzalez JF, Decker JM, Pham KT, et al. (2008) Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection. Proc Natl Acad Sci USA 105: 7552-7557 doi:10.1073/pnas.0802203105.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 7552-7557
-
-
Keele, B.F.1
Giorgi, E.E.2
Salazar-Gonzalez, J.F.3
Decker, J.M.4
Pham, K.T.5
-
8
-
-
18144429071
-
Characterization of human immunodeficiency virus type 1 (HIV-1) envelope variation and neutralizing antibody responses during transmission of HIV-1 subtype B
-
doi:10.1128/JVI.79.10.6523-6527.2005
-
Frost SDW, Liu Y, Pond SLK, Chappey C, Wrin T, et al. (2005) Characterization of human immunodeficiency virus type 1 (HIV-1) envelope variation and neutralizing antibody responses during transmission of HIV-1 subtype B. J Virol. 79: 6523-6527 doi:10.1128/JVI.79.10.6523-6527.2005.
-
(2005)
J Virol
, vol.79
, pp. 6523-6527
-
-
Frost, S.D.W.1
Liu, Y.2
Pond, S.L.K.3
Chappey, C.4
Wrin, T.5
-
9
-
-
50049106445
-
Physicochemical correlation between amino acid sites in short sequences under selective pressure
-
doi:10.1007/978-3-540-79450-9_14
-
Campo D, Dimitrova Z, Khudyakov Y, (2008) Physicochemical correlation between amino acid sites in short sequences under selective pressure. Bioinformatics research and applications 4983/2008: 146-158 doi:10.1007/978-3-540-79450-9_14.
-
(2008)
Bioinformatics Research and Applications
, vol.4983
, pp. 146-158
-
-
Campo, D.1
Dimitrova, Z.2
Khudyakov, Y.3
-
10
-
-
18144406581
-
Solving the protein sequence metric problem
-
doi:10.1073/pnas.0408677102
-
Atchley WR, Zhao J, Fernandes AD, Drüke T, (2005) Solving the protein sequence metric problem. Proc Natl Acad Sci USA 102: 6395-6400 doi:10.1073/pnas.0408677102.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 6395-6400
-
-
Atchley, W.R.1
Zhao, J.2
Fernandes, A.D.3
Drüke, T.4
-
11
-
-
33845907935
-
Molecular architecture of the DNA-binding region and its relationship to classification of basic helix-loop-helix proteins
-
doi:10.1093/molbev/msl143
-
Atchley WR, Zhao J, (2007) Molecular architecture of the DNA-binding region and its relationship to classification of basic helix-loop-helix proteins. Mol Biol Evol 24: 192-202 doi:10.1093/molbev/msl143.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 192-202
-
-
Atchley, W.R.1
Zhao, J.2
-
12
-
-
7244250182
-
Data mining in bioinformatics using Weka
-
doi:10.1093/bioinformatics/bth261
-
Frank E, Hall M, Trigg L, Holmes G, Witten IH, (2004) Data mining in bioinformatics using Weka. Bioinformatics 20: 2479-2481 doi:10.1093/bioinformatics/bth261.
-
(2004)
Bioinformatics
, vol.20
, pp. 2479-2481
-
-
Frank, E.1
Hall, M.2
Trigg, L.3
Holmes, G.4
Witten, I.H.5
-
13
-
-
34047158822
-
BioWeka-extending the Weka framework for bioinformatics
-
doi:10.1093/bioinformatics/btl671
-
Gewehr JE, Szugat M, Zimmer R, (2007) BioWeka-extending the Weka framework for bioinformatics. Bioinformatics 23: 651-653 doi:10.1093/bioinformatics/btl671.
-
(2007)
Bioinformatics
, vol.23
, pp. 651-653
-
-
Gewehr, J.E.1
Szugat, M.2
Zimmer, R.3
-
14
-
-
0035860537
-
Machine learning for science: state of the art and future prospects
-
doi:10.1126/science.293.5537.2051
-
Mjolsness E, DeCoste D, (2001) Machine learning for science: state of the art and future prospects. Science 293: 2051-2055 doi:10.1126/science.293.5537.2051.
-
(2001)
Science
, vol.293
, pp. 2051-2055
-
-
Mjolsness, E.1
DeCoste, D.2
-
15
-
-
36849083542
-
Bioinformatics prediction of HIV coreceptor usage
-
doi:10.1038/nbt1371
-
Lengauer T, Sander O, Sierra S, Thielen A, Kaiser R, (2007) Bioinformatics prediction of HIV coreceptor usage. Nat Biotechnol 25: 1407-1410 doi:10.1038/nbt1371.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 1407-1410
-
-
Lengauer, T.1
Sander, O.2
Sierra, S.3
Thielen, A.4
Kaiser, R.5
-
16
-
-
0345505217
-
A new perspective on V3 phenotype prediction
-
Pillai S, Good B, Richman D, Corbeil J, (2003) A new perspective on V3 phenotype prediction. AIDS Res Hum Retroviruses 19: 145-149.
-
(2003)
AIDS Res Hum Retroviruses
, vol.19
, pp. 145-149
-
-
Pillai, S.1
Good, B.2
Richman, D.3
Corbeil, J.4
-
17
-
-
10944237748
-
Extracting the Knowledge Embedded in Support Vector Machines
-
(IEEE Cat. No.04CH37541) IEEE. doi:10.1109/IJCNN.2004.1379916
-
Xiuju Fu, ChongJin Ong, Keerthi S, Gih Guang Hung, Liping Goh (2004) Extracting the Knowledge Embedded in Support Vector Machines. IEEE International Joint Conference on Neural Networks (IEEE Cat. No.04CH37541) IEEE. 291-296. doi:10.1109/IJCNN.2004.1379916.
-
(2004)
IEEE International Joint Conference on Neural Networks
, pp. 291-296
-
-
Xiuju, F.1
ChongJin, O.2
Keerthi, S.3
Gih Guang, H.4
Liping, G.5
-
18
-
-
33745713844
-
Genetic attributes of cerebrospinal fluid-derived HIV-1 env
-
doi:10.1093/brain/awl136
-
Pillai SK, Pond SLK, Liu Y, Good BM, Strain MC, et al. (2006) Genetic attributes of cerebrospinal fluid-derived HIV-1 env. Brain 129: 1872-1883 doi:10.1093/brain/awl136.
-
(2006)
Brain
, vol.129
, pp. 1872-1883
-
-
Pillai, S.K.1
Pond, S.L.K.2
Liu, Y.3
Good, B.M.4
Strain, M.C.5
-
19
-
-
36948998606
-
An evolutionary-network model reveals stratified interactions in the V3 loop of the HIV-1 envelope
-
doi:10.1371/journal.pcbi.0030231
-
Poon AFY, Lewis FI, Pond SLK, Frost SDW, (2007) An evolutionary-network model reveals stratified interactions in the V3 loop of the HIV-1 envelope. PLoS Comput Biol 3: e231 doi:10.1371/journal.pcbi.0030231.
-
(2007)
PLoS Comput Biol
, vol.3
-
-
Poon, A.F.Y.1
Lewis, F.I.2
Pond, S.L.K.3
Frost, S.D.W.4
-
20
-
-
0029849837
-
Covariability of V3 loop amino acids
-
Bickel PJ, Cosman PC, Olshen RA, Spector PC, Rodrigo AG, et al. (1996) Covariability of V3 loop amino acids. AIDS Res Hum Retroviruses 12: 1401-1411.
-
(1996)
AIDS Res Hum Retroviruses
, vol.12
, pp. 1401-1411
-
-
Bickel, P.J.1
Cosman, P.C.2
Olshen, R.A.3
Spector, P.C.4
Rodrigo, A.G.5
-
21
-
-
0027297096
-
Covariation of mutations in the V3 loop of human immunodeficiency virus type 1 envelope protein: an information theoretic analysis
-
Korber BT, Farber RM, Wolpert DH, Lapedes AS, (1993) Covariation of mutations in the V3 loop of human immunodeficiency virus type 1 envelope protein: an information theoretic analysis. Proc Natl Acad Sci USA 90: 7176-7180.
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 7176-7180
-
-
Korber, B.T.1
Farber, R.M.2
Wolpert, D.H.3
Lapedes, A.S.4
-
22
-
-
80053452761
-
Recurrent Signature Patterns in HIV-1 B Clade Envelope Glycoproteins Associated with either Early or Chronic Infections
-
doi:10.1371/journal.ppat.1002209.t006
-
Gnanakaran S, Bhattacharya T, Daniels M, Keele BF, Hraber PT, et al. (2011) Recurrent Signature Patterns in HIV-1 B Clade Envelope Glycoproteins Associated with either Early or Chronic Infections. PLoS Pathog 7: e1002209 doi:10.1371/journal.ppat.1002209.t006.
-
(2011)
PLoS Pathog
, vol.7
-
-
Gnanakaran, S.1
Bhattacharya, T.2
Daniels, M.3
Keele, B.F.4
Hraber, P.T.5
-
23
-
-
0028952146
-
HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy
-
Coffin JM, (1995) HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy. Science 267: 483-489.
-
(1995)
Science
, vol.267
, pp. 483-489
-
-
Coffin, J.M.1
-
25
-
-
35848953181
-
Updated research nosology for HIV-associated neurocognitive disorders
-
doi:10.1212/01.WNL.0000287431.88658.8b
-
Antinori A, Arendt G, Becker JT, Brew BJ, Byrd DA, et al. (2007) Updated research nosology for HIV-associated neurocognitive disorders. Neurology 69: 1789-1799 doi:10.1212/01.WNL.0000287431.88658.8b.
-
(2007)
Neurology
, vol.69
, pp. 1789-1799
-
-
Antinori, A.1
Arendt, G.2
Becker, J.T.3
Brew, B.J.4
Byrd, D.A.5
-
26
-
-
79955529997
-
Subcortical brain atrophy persists even in HAART-regulated HIV disease
-
doi:10.1007/s11682-011-9113-8
-
Becker JT, Sanders J, Madsen SK, Ragin A, Kingsley L, et al. (2011) Subcortical brain atrophy persists even in HAART-regulated HIV disease. Brain Imaging Behav 5: 77-85 doi:10.1007/s11682-011-9113-8.
-
(2011)
Brain Imaging Behav
, vol.5
, pp. 77-85
-
-
Becker, J.T.1
Sanders, J.2
Madsen, S.K.3
Ragin, A.4
Kingsley, L.5
-
27
-
-
79952921819
-
HIV-associated neurocognitive disorders before and during the era of combination antiretroviral therapy: differences in rates, nature, and predictors
-
doi:10.1007/s13365-010-0006-1
-
Heaton RK, Franklin DR, Ellis RJ, McCutchan JA, Letendre SL, et al. (2011) HIV-associated neurocognitive disorders before and during the era of combination antiretroviral therapy: differences in rates, nature, and predictors. J Neurovirol 17: 3-16 doi:10.1007/s13365-010-0006-1.
-
(2011)
J Neurovirol
, vol.17
, pp. 3-16
-
-
Heaton, R.K.1
Franklin, D.R.2
Ellis, R.J.3
McCutchan, J.A.4
Letendre, S.L.5
-
28
-
-
77952902769
-
HIV-associated neurocognitive disorders: is there a hidden epidemic?
-
doi:10.1097/QAD.0b013e3283391d56
-
McArthur JC, Brew BJ, (2010) HIV-associated neurocognitive disorders: is there a hidden epidemic? AIDS 24: 1367-1370 doi:10.1097/QAD.0b013e3283391d56.
-
(2010)
AIDS
, vol.24
, pp. 1367-1370
-
-
McArthur, J.C.1
Brew, B.J.2
-
29
-
-
77952940200
-
Human immunodeficiency virus-associated neurocognitive disorders: Mind the gap
-
doi:10.1002/ana.22053
-
McArthur JC, Steiner J, Sacktor N, Nath A, (2010) Human immunodeficiency virus-associated neurocognitive disorders: Mind the gap. Ann Neurol 67: 699-714 doi:10.1002/ana.22053.
-
(2010)
Ann Neurol
, vol.67
, pp. 699-714
-
-
McArthur, J.C.1
Steiner, J.2
Sacktor, N.3
Nath, A.4
-
30
-
-
81355138648
-
Neurocognitive impact of antiretroviral treatment: thinking long-term
-
doi:10.1007/s11904-011-0091-7
-
McPhail ME, Robertson KR, (2011) Neurocognitive impact of antiretroviral treatment: thinking long-term. Curr HIV/AIDS Rep 8: 249-256 doi:10.1007/s11904-011-0091-7.
-
(2011)
Curr HIV/AIDS Rep
, vol.8
, pp. 249-256
-
-
McPhail, M.E.1
Robertson, K.R.2
-
31
-
-
0036800561
-
HIV-related neuropathology, 1985 to 1999: rising prevalence of HIV encephalopathy in the era of highly active antiretroviral therapy
-
Neuenburg JK, Brodt HR, Herndier BG, Bickel M, Bacchetti P, et al. (2002) HIV-related neuropathology, 1985 to 1999: rising prevalence of HIV encephalopathy in the era of highly active antiretroviral therapy. J Acquir Immune Defic Syndr 31: 171-177.
-
(2002)
J Acquir Immune Defic Syndr
, vol.31
, pp. 171-177
-
-
Neuenburg, J.K.1
Brodt, H.R.2
Herndier, B.G.3
Bickel, M.4
Bacchetti, P.5
-
32
-
-
84855685118
-
HIV-1 infection and neurocognitive impairment in the current era
-
doi:10.1002/rmv.711
-
del Palacio M, Alvarez S, Muñoz-Fernández MÁ, (2012) HIV-1 infection and neurocognitive impairment in the current era. Rev Med Virol 22: 33-45 doi:10.1002/rmv.711.
-
(2012)
Rev Med Virol
, vol.22
, pp. 33-45
-
-
del Palacio, M.1
Alvarez, S.2
Muñoz-Fernández, M.Á.3
-
33
-
-
0036091705
-
HIV-associated cognitive impairment before and after the advent of combination therapy
-
doi:10.1080/13550280290049615
-
Sacktor N, McDermott MP, Marder K, Schifitto G, Selnes OA, et al. (2002) HIV-associated cognitive impairment before and after the advent of combination therapy. J Neurovirol 8: 136-142 doi:10.1080/13550280290049615.
-
(2002)
J Neurovirol
, vol.8
, pp. 136-142
-
-
Sacktor, N.1
McDermott, M.P.2
Marder, K.3
Schifitto, G.4
Selnes, O.A.5
-
34
-
-
79952446244
-
HIV-1 infection and cognitive impairment in the cART era: a review
-
doi:10.1097/QAD.0b013e3283437f9a
-
Schouten J, Cinque P, Gisslen M, Reiss P, Portegies P, (2011) HIV-1 infection and cognitive impairment in the cART era: a review. AIDS 25: 561-575 doi:10.1097/QAD.0b013e3283437f9a.
-
(2011)
AIDS
, vol.25
, pp. 561-575
-
-
Schouten, J.1
Cinque, P.2
Gisslen, M.3
Reiss, P.4
Portegies, P.5
-
35
-
-
22744455058
-
HIV-1 infection and AIDS: consequences for the central nervous system
-
doi:10.1038/sj.cdd.4401623
-
Kaul M, Zheng J, Okamoto S, Gendelman HE, Lipton SA, (2005) HIV-1 infection and AIDS: consequences for the central nervous system. Cell Death Differ 12Suppl 1: 878-892 doi:10.1038/sj.cdd.4401623.
-
(2005)
Cell Death Differ
, vol.12
, pp. 878-892
-
-
Kaul, M.1
Zheng, J.2
Okamoto, S.3
Gendelman, H.E.4
Lipton, S.A.5
-
36
-
-
0032708190
-
Early entry and widespread cellular involvement of HIV-1 DNA in brains of HIV-1 positive asymptomatic individuals
-
An SF, Groves M, Gray F, Scaravilli F, (1999) Early entry and widespread cellular involvement of HIV-1 DNA in brains of HIV-1 positive asymptomatic individuals. J Neuropathol Exp Neurol 58: 1156-1162.
-
(1999)
J Neuropathol Exp Neurol
, vol.58
, pp. 1156-1162
-
-
An, S.F.1
Groves, M.2
Gray, F.3
Scaravilli, F.4
-
37
-
-
0026661095
-
Early viral brain invasion in iatrogenic human immunodeficiency virus infection
-
Davis LE, Hjelle BL, Miller VE, Palmer DL, Llewellyn AL, et al. (1992) Early viral brain invasion in iatrogenic human immunodeficiency virus infection. Neurology 42: 1736-1739.
-
(1992)
Neurology
, vol.42
, pp. 1736-1739
-
-
Davis, L.E.1
Hjelle, B.L.2
Miller, V.E.3
Palmer, D.L.4
Llewellyn, A.L.5
-
38
-
-
77950651604
-
Molecular mechanisms of neuroinvasion by monocytes-macrophages in HIV-1 infection
-
doi:10.1186/1742-4690-7-30
-
Gras G, Kaul M, (2010) Molecular mechanisms of neuroinvasion by monocytes-macrophages in HIV-1 infection. Retrovirology 7: 30 doi:10.1186/1742-4690-7-30.
-
(2010)
Retrovirology
, vol.7
, pp. 30
-
-
Gras, G.1
Kaul, M.2
-
39
-
-
21344455519
-
Cells of the central nervous system as targets and reservoirs of the human immunodeficiency virus
-
doi:10.1016/j.virusres.2005.04.009
-
Kramer-Hämmerle S, Rothenaigner I, Wolff H, Bell JE, Brack-Werner R, (2005) Cells of the central nervous system as targets and reservoirs of the human immunodeficiency virus. Virus Res 111: 194-213 doi:10.1016/j.virusres.2005.04.009.
-
(2005)
Virus Res
, vol.111
, pp. 194-213
-
-
Kramer-Hämmerle, S.1
Rothenaigner, I.2
Wolff, H.3
Bell, J.E.4
Brack-Werner, R.5
-
40
-
-
0022552689
-
Immunohistochemical identification of HTLV-III antigen in brains of patients with AIDS
-
doi:10.1002/ana.410200304
-
Gabuzda DH, Ho DD, la Monte de SM, Hirsch MS, Rota TR, et al. (1986) Immunohistochemical identification of HTLV-III antigen in brains of patients with AIDS. Ann Neurol 20: 289-295 doi:10.1002/ana.410200304.
-
(1986)
Ann Neurol
, vol.20
, pp. 289-295
-
-
Gabuzda, D.H.1
Ho, D.D.2
de la Monte, S.M.3
Hirsch, M.S.4
Rota, T.R.5
-
41
-
-
84944282429
-
Virus isolation from and identification of HTLV-III/LAV-producing cells in brain tissue from a patient with AIDS
-
Gartner S, Markovits P, Markovitz DM, Betts RF, Popovic M, (1986) Virus isolation from and identification of HTLV-III/LAV-producing cells in brain tissue from a patient with AIDS. JAMA 256: 2365-2371.
-
(1986)
JAMA
, vol.256
, pp. 2365-2371
-
-
Gartner, S.1
Markovits, P.2
Markovitz, D.M.3
Betts, R.F.4
Popovic, M.5
-
42
-
-
0022522203
-
Detection of AIDS virus in macrophages in brain tissue from AIDS patients with encephalopathy
-
Koenig S, Gendelman HE, Orenstein JM, Dal Canto MC, Pezeshkpour GH, et al. (1986) Detection of AIDS virus in macrophages in brain tissue from AIDS patients with encephalopathy. Science 233: 1089-1093.
-
(1986)
Science
, vol.233
, pp. 1089-1093
-
-
Koenig, S.1
Gendelman, H.E.2
Orenstein, J.M.3
Dal Canto, M.C.4
Pezeshkpour, G.H.5
-
43
-
-
40449141429
-
Changes in the incidence and predictors of human immunodeficiency virus-associated dementia in the era of highly active antiretroviral therapy
-
doi:10.1002/ana.21225
-
Bhaskaran K, Mussini C, Antinori A, Walker AS, Dorrucci M, et al. (2008) Changes in the incidence and predictors of human immunodeficiency virus-associated dementia in the era of highly active antiretroviral therapy. Ann Neurol 63: 213-221 doi:10.1002/ana.21225.
-
(2008)
Ann Neurol
, vol.63
, pp. 213-221
-
-
Bhaskaran, K.1
Mussini, C.2
Antinori, A.3
Walker, A.S.4
Dorrucci, M.5
-
44
-
-
69949119664
-
Cognitive functioning during highly active antiretroviral therapy interruption in human immunodeficiency virus type 1 infection
-
doi:10.1080/13550280802372313
-
Childers ME, Woods SP, Letendre S, McCutchan JA, Rosario D, et al. (2008) Cognitive functioning during highly active antiretroviral therapy interruption in human immunodeficiency virus type 1 infection. J Neurovirol 14: 550-557 doi:10.1080/13550280802372313.
-
(2008)
J Neurovirol
, vol.14
, pp. 550-557
-
-
Childers, M.E.1
Woods, S.P.2
Letendre, S.3
McCutchan, J.A.4
Rosario, D.5
-
45
-
-
0033015441
-
Plasma viral load and CD4 lymphocytes predict HIV-associated dementia and sensory neuropathy
-
Childs EA, Lyles RH, Selnes OA, Chen B, Miller EN, et al. (1999) Plasma viral load and CD4 lymphocytes predict HIV-associated dementia and sensory neuropathy. Neurology 52: 607-613.
-
(1999)
Neurology
, vol.52
, pp. 607-613
-
-
Childs, E.A.1
Lyles, R.H.2
Selnes, O.A.3
Chen, B.4
Miller, E.N.5
-
46
-
-
0036279512
-
Progression to neuropsychological impairment in human immunodeficiency virus infection predicted by elevated cerebrospinal fluid levels of human immunodeficiency virus RNA
-
Ellis RJ, Moore DJ, Childers ME, Letendre S, McCutchan JA, et al. (2002) Progression to neuropsychological impairment in human immunodeficiency virus infection predicted by elevated cerebrospinal fluid levels of human immunodeficiency virus RNA. Arch Neurol 59: 923-928.
-
(2002)
Arch Neurol
, vol.59
, pp. 923-928
-
-
Ellis, R.J.1
Moore, D.J.2
Childers, M.E.3
Letendre, S.4
McCutchan, J.A.5
-
47
-
-
0141924452
-
Prediction of incident neurocognitive impairment by plasma HIV RNA and CD4 levels early after HIV seroconversion
-
doi:10.1001/archneur.60.10.1406
-
Marcotte TD, Deutsch R, McCutchan JA, Moore DJ, Letendre S, et al. (2003) Prediction of incident neurocognitive impairment by plasma HIV RNA and CD4 levels early after HIV seroconversion. Arch Neurol 60: 1406-1412 doi:10.1001/archneur.60.10.1406.
-
(2003)
Arch Neurol
, vol.60
, pp. 1406-1412
-
-
Marcotte, T.D.1
Deutsch, R.2
McCutchan, J.A.3
Moore, D.J.4
Letendre, S.5
-
48
-
-
84871934278
-
Predictors of symptomatic HIV-associated neurocognitive disorders in universal health care
-
doi:10.1111/j.1468-1293.2012.01043.x
-
McCombe J, Vivithanaporn P, Gill M, Power C (2012) Predictors of symptomatic HIV-associated neurocognitive disorders in universal health care. HIV Med. doi:10.1111/j.1468-1293.2012.01043.x.
-
(2012)
HIV Med
-
-
McCombe, J.1
Vivithanaporn, P.2
Gill, M.3
Power, C.4
-
49
-
-
10444241256
-
Evaluation of HIV RNA and markers of immune activation as predictors of HIV-associated dementia
-
Sevigny JJ, Albert SM, McDermott MP, McArthur JC, Sacktor N, et al. (2004) Evaluation of HIV RNA and markers of immune activation as predictors of HIV-associated dementia. Neurology 63: 2084-2090.
-
(2004)
Neurology
, vol.63
, pp. 2084-2090
-
-
Sevigny, J.J.1
Albert, S.M.2
McDermott, M.P.3
McArthur, J.C.4
Sacktor, N.5
-
50
-
-
12144260890
-
Circulating proviral HIV DNA and HIV-associated dementia
-
Shiramizu B, Gartner S, Williams A, Shikuma C, Ratto-Kim S, et al. (2005) Circulating proviral HIV DNA and HIV-associated dementia. AIDS 19: 45-52.
-
(2005)
AIDS
, vol.19
, pp. 45-52
-
-
Shiramizu, B.1
Gartner, S.2
Williams, A.3
Shikuma, C.4
Ratto-Kim, S.5
-
51
-
-
0032889037
-
Microglia express CCR5, CXCR4, and CCR3, but of these, CCR5 is the principal coreceptor for human immunodeficiency virus type 1 dementia isolates
-
Albright AV, Shieh JT, Itoh T, Lee B, Pleasure D, et al. (1999) Microglia express CCR5, CXCR4, and CCR3, but of these, CCR5 is the principal coreceptor for human immunodeficiency virus type 1 dementia isolates. J Virol 73: 205-213.
-
(1999)
J Virol
, vol.73
, pp. 205-213
-
-
Albright, A.V.1
Shieh, J.T.2
Itoh, T.3
Lee, B.4
Pleasure, D.5
-
52
-
-
33745863161
-
Mechanisms of HIV-1 neurotropism
-
Dunfee R, Thomas ER, Gorry PR, Wang J, Ancuta P, et al. (2006) Mechanisms of HIV-1 neurotropism. Curr HIV Res 4: 267-278.
-
(2006)
Curr HIV Res
, vol.4
, pp. 267-278
-
-
Dunfee, R.1
Thomas, E.R.2
Gorry, P.R.3
Wang, J.4
Ancuta, P.5
-
53
-
-
2642676073
-
Role of the beta-chemokine receptors CCR3 and CCR5 in human immunodeficiency virus type 1 infection of monocytes and microglia
-
Ghorpade A, Xia MQ, Hyman BT, Persidsky Y, Nukuna A, et al. (1998) Role of the beta-chemokine receptors CCR3 and CCR5 in human immunodeficiency virus type 1 infection of monocytes and microglia. J Virol 72: 3351-3361.
-
(1998)
J Virol
, vol.72
, pp. 3351-3361
-
-
Ghorpade, A.1
Xia, M.Q.2
Hyman, B.T.3
Persidsky, Y.4
Nukuna, A.5
-
54
-
-
19244380883
-
CCR3 and CCR5 are co-receptors for HIV-1 infection of microglia
-
doi:10.1038/385645a0
-
He J, Chen Y, Farzan M, Choe H, Ohagen A, et al. (1997) CCR3 and CCR5 are co-receptors for HIV-1 infection of microglia. Nature 385: 645-649 doi:10.1038/385645a0.
-
(1997)
Nature
, vol.385
, pp. 645-649
-
-
He, J.1
Chen, Y.2
Farzan, M.3
Choe, H.4
Ohagen, A.5
-
55
-
-
0032731642
-
Persistent CCR5 utilization and enhanced macrophage tropism by primary blood human immunodeficiency virus type 1 isolates from advanced stages of disease and comparison to tissue-derived isolates
-
Li S, Juarez J, Alali M, Dwyer D, Collman R, et al. (1999) Persistent CCR5 utilization and enhanced macrophage tropism by primary blood human immunodeficiency virus type 1 isolates from advanced stages of disease and comparison to tissue-derived isolates. J Virol 73: 9741-9755.
-
(1999)
J Virol
, vol.73
, pp. 9741-9755
-
-
Li, S.1
Juarez, J.2
Alali, M.3
Dwyer, D.4
Collman, R.5
-
56
-
-
0028359851
-
Demented and nondemented patients with AIDS differ in brain-derived human immunodeficiency virus type 1 envelope sequences
-
Power C, McArthur JC, Johnson RT, Griffin DE, Glass JD, et al. (1994) Demented and nondemented patients with AIDS differ in brain-derived human immunodeficiency virus type 1 envelope sequences. J Virol 68: 4643-4649.
-
(1994)
J Virol
, vol.68
, pp. 4643-4649
-
-
Power, C.1
McArthur, J.C.2
Johnson, R.T.3
Griffin, D.E.4
Glass, J.D.5
-
57
-
-
0033986315
-
Determinants of syncytium formation in microglia by human immunodeficiency virus type 1: role of the V1/V2 domains
-
Shieh JT, Martín J, Baltuch G, Malim MH, González-Scarano F, (2000) Determinants of syncytium formation in microglia by human immunodeficiency virus type 1: role of the V1/V2 domains. J Virol 74: 693-701.
-
(2000)
J Virol
, vol.74
, pp. 693-701
-
-
Shieh, J.T.1
Martín, J.2
Baltuch, G.3
Malim, M.H.4
González-Scarano, F.5
-
58
-
-
0034116956
-
Chemokine receptors and mechanisms of cell death in HIV neuropathogenesis
-
Gabuzda D, Wang J, (2000) Chemokine receptors and mechanisms of cell death in HIV neuropathogenesis. J Neurovirol 6Suppl 1: S24-S32.
-
(2000)
J Neurovirol
, vol.6
-
-
Gabuzda, D.1
Wang, J.2
-
59
-
-
0037095687
-
Caspase cascades in human immunodeficiency virus-associated neurodegeneration
-
Garden GA, Budd SL, Tsai E, Hanson L, Kaul M, et al. (2002) Caspase cascades in human immunodeficiency virus-associated neurodegeneration. J Neurosci 22: 4015-4024.
-
(2002)
J Neurosci
, vol.22
, pp. 4015-4024
-
-
Garden, G.A.1
Budd, S.L.2
Tsai, E.3
Hanson, L.4
Kaul, M.5
-
60
-
-
18144391902
-
Distinct mechanisms of CD4+ and CD8+ T-cell activation and bystander apoptosis induced by human immunodeficiency virus type 1 virions
-
doi:10.1128/JVI.79.10.6299-6311.2005
-
Holm GH, Gabuzda D, (2005) Distinct mechanisms of CD4+ and CD8+ T-cell activation and bystander apoptosis induced by human immunodeficiency virus type 1 virions. J Virol 79: 6299-6311 doi:10.1128/JVI.79.10.6299-6311.2005.
-
(2005)
J Virol
, vol.79
, pp. 6299-6311
-
-
Holm, G.H.1
Gabuzda, D.2
-
61
-
-
70449530865
-
CNS inflammation and macrophage/microglial biology associated with HIV-1 infection
-
doi:10.1007/s11481-009-9174-2
-
Yadav A, Collman RG, (2009) CNS inflammation and macrophage/microglial biology associated with HIV-1 infection. J Neuroimmune Pharmacol 4: 430-447 doi:10.1007/s11481-009-9174-2.
-
(2009)
J Neuroimmune Pharmacol
, vol.4
, pp. 430-447
-
-
Yadav, A.1
Collman, R.G.2
-
62
-
-
77649100532
-
Cliniconeuropathologic correlates of human immunodeficiency virus in the era of antiretroviral therapy
-
doi:10.3109/13550280903131915
-
Everall I, Vaida F, Khanlou N, Lazzaretto D, Achim C, et al. (2009) Cliniconeuropathologic correlates of human immunodeficiency virus in the era of antiretroviral therapy. J Neurovirol 15: 360-370 doi:10.3109/13550280903131915.
-
(2009)
J Neurovirol
, vol.15
, pp. 360-370
-
-
Everall, I.1
Vaida, F.2
Khanlou, N.3
Lazzaretto, D.4
Achim, C.5
-
63
-
-
20744436235
-
Human immunodeficiency virus type 1 genetic diversity in the nervous system: evolutionary epiphenomenon or disease determinant?
-
doi:10.1080/13550280590922838
-
van Marle G, Power C, (2005) Human immunodeficiency virus type 1 genetic diversity in the nervous system: evolutionary epiphenomenon or disease determinant? J Neurovirol 11: 107-128 doi:10.1080/13550280590922838.
-
(2005)
J Neurovirol
, vol.11
, pp. 107-128
-
-
van Marle, G.1
Power, C.2
-
64
-
-
0030727486
-
Relationship between human immunodeficiency virus-associated dementia and viral load in cerebrospinal fluid and brain
-
doi:10.1002/ana.410420504
-
McArthur JC, McClernon DR, Cronin MF, Nance-Sproson TE, Saah AJ, et al. (1997) Relationship between human immunodeficiency virus-associated dementia and viral load in cerebrospinal fluid and brain. Ann Neurol 42: 689-698 doi:10.1002/ana.410420504.
-
(1997)
Ann Neurol
, vol.42
, pp. 689-698
-
-
McArthur, J.C.1
McClernon, D.R.2
Cronin, M.F.3
Nance-Sproson, T.E.4
Saah, A.J.5
-
65
-
-
0034796289
-
Macrophage tropism of human immunodeficiency virus type 1 isolates from brain and lymphoid tissues predicts neurotropism independent of coreceptor specificity
-
doi:10.1128/JVI.75.21.10073-10089.2001
-
Gorry PR, Bristol G, Zack JA, Ritola K, Swanstrom R, et al. (2001) Macrophage tropism of human immunodeficiency virus type 1 isolates from brain and lymphoid tissues predicts neurotropism independent of coreceptor specificity. J Virol 75: 10073-10089 doi:10.1128/JVI.75.21.10073-10089.2001.
-
(2001)
J Virol
, vol.75
, pp. 10073-10089
-
-
Gorry, P.R.1
Bristol, G.2
Zack, J.A.3
Ritola, K.4
Swanstrom, R.5
-
66
-
-
0036114281
-
Increased CCR5 affinity and reduced CCR5/CD4 dependence of a neurovirulent primary human immunodeficiency virus type 1 isolate
-
Gorry PR, Taylor J, Holm GH, Mehle A, Morgan T, et al. (2002) Increased CCR5 affinity and reduced CCR5/CD4 dependence of a neurovirulent primary human immunodeficiency virus type 1 isolate. J Virol 76: 6277-6292.
-
(2002)
J Virol
, vol.76
, pp. 6277-6292
-
-
Gorry, P.R.1
Taylor, J.2
Holm, G.H.3
Mehle, A.4
Morgan, T.5
-
67
-
-
0242300160
-
Genetic and functional analysis of full-length human immunodeficiency virus type 1 env genes derived from brain and blood of patients with AIDS
-
Ohagen A, Devitt A, Kunstman KJ, Gorry PR, Rose PP, et al. (2003) Genetic and functional analysis of full-length human immunodeficiency virus type 1 env genes derived from brain and blood of patients with AIDS. J Virol 77: 12336-12345.
-
(2003)
J Virol
, vol.77
, pp. 12336-12345
-
-
Ohagen, A.1
Devitt, A.2
Kunstman, K.J.3
Gorry, P.R.4
Rose, P.P.5
-
68
-
-
2942687021
-
Biological analysis of human immunodeficiency virus type 1 R5 envelopes amplified from brain and lymph node tissues of AIDS patients with neuropathology reveals two distinct tropism phenotypes and identifies envelopes in the brain that confer an enhanced tropism and fusigenicity for macrophages
-
doi:10.1128/JVI.78.13.6915-6926.2004
-
Peters PJ, Bhattacharya J, Hibbitts S, Dittmar MT, Simmons G, et al. (2004) Biological analysis of human immunodeficiency virus type 1 R5 envelopes amplified from brain and lymph node tissues of AIDS patients with neuropathology reveals two distinct tropism phenotypes and identifies envelopes in the brain that confer an enhanced tropism and fusigenicity for macrophages. J Virol 78: 6915-6926 doi:10.1128/JVI.78.13.6915-6926.2004.
-
(2004)
J Virol
, vol.78
, pp. 6915-6926
-
-
Peters, P.J.1
Bhattacharya, J.2
Hibbitts, S.3
Dittmar, M.T.4
Simmons, G.5
-
69
-
-
80055096215
-
HIV-1 replication in the central nervous system occurs in two distinct cell types
-
doi:10.1371/journal.ppat.1002286
-
Schnell G, Joseph S, Spudich S, Price RW, Swanstrom R, (2011) HIV-1 replication in the central nervous system occurs in two distinct cell types. PLoS Pathog 7: e1002286 doi:10.1371/journal.ppat.1002286.
-
(2011)
PLoS Pathog
, vol.7
-
-
Schnell, G.1
Joseph, S.2
Spudich, S.3
Price, R.W.4
Swanstrom, R.5
-
70
-
-
34548680527
-
Loss of the N-linked glycosylation site at position 386 in the HIV envelope V4 region enhances macrophage tropism and is associated with dementia
-
doi:10.1016/j.virol.2007.05.029
-
Dunfee RL, Thomas ER, Wang J, Kunstman K, Wolinsky SM, et al. (2007) Loss of the N-linked glycosylation site at position 386 in the HIV envelope V4 region enhances macrophage tropism and is associated with dementia. Virology 367: 222-234 doi:10.1016/j.virol.2007.05.029.
-
(2007)
Virology
, vol.367
, pp. 222-234
-
-
Dunfee, R.L.1
Thomas, E.R.2
Wang, J.3
Kunstman, K.4
Wolinsky, S.M.5
-
71
-
-
33750036975
-
The HIV Env variant N283 enhances macrophage tropism and is associated with brain infection and dementia
-
doi:10.1073/pnas.0605513103
-
Dunfee RL, Thomas ER, Gorry PR, Wang J, Taylor J, et al. (2006) The HIV Env variant N283 enhances macrophage tropism and is associated with brain infection and dementia. Proc Natl Acad Sci USA 103: 15160-15165 doi:10.1073/pnas.0605513103.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 15160-15165
-
-
Dunfee, R.L.1
Thomas, E.R.2
Gorry, P.R.3
Wang, J.4
Taylor, J.5
-
72
-
-
0031690759
-
Neuronal death induced by brain-derived human immunodeficiency virus type 1 envelope genes differs between demented and nondemented AIDS patients
-
Power C, McArthur JC, Nath A, Wehrly K, Mayne M, et al. (1998) Neuronal death induced by brain-derived human immunodeficiency virus type 1 envelope genes differs between demented and nondemented AIDS patients. J Virol 72: 9045-9053.
-
(1998)
J Virol
, vol.72
, pp. 9045-9053
-
-
Power, C.1
McArthur, J.C.2
Nath, A.3
Wehrly, K.4
Mayne, M.5
-
73
-
-
23244438578
-
Increased human immunodeficiency virus type 1 (HIV-1) env compartmentalization in the presence of HIV-1-associated dementia
-
doi:10.1128/JVI.79.16.10830-10834.2005
-
Ritola K, Robertson K, Fiscus SA, Hall C, Swanstrom R, (2005) Increased human immunodeficiency virus type 1 (HIV-1) env compartmentalization in the presence of HIV-1-associated dementia. J Virol 79: 10830-10834 doi:10.1128/JVI.79.16.10830-10834.2005.
-
(2005)
J Virol
, vol.79
, pp. 10830-10834
-
-
Ritola, K.1
Robertson, K.2
Fiscus, S.A.3
Hall, C.4
Swanstrom, R.5
-
74
-
-
33244483919
-
Env gp120 sequence analysis of HIV type 1 strains from diverse areas of the brain shows preponderance of CCR5 usage
-
doi:10.1089/aid.2006.22.177
-
Shah M, Smit TK, Morgello S, Tourtellotte W, Gelman B, et al. (2006) Env gp120 sequence analysis of HIV type 1 strains from diverse areas of the brain shows preponderance of CCR5 usage. AIDS Res Hum Retroviruses 22: 177-181 doi:10.1089/aid.2006.22.177.
-
(2006)
AIDS Res Hum Retroviruses
, vol.22
, pp. 177-181
-
-
Shah, M.1
Smit, T.K.2
Morgello, S.3
Tourtellotte, W.4
Gelman, B.5
-
75
-
-
0032991740
-
Independent evolution of HIV type 1 in different brain regions
-
doi:10.1089/088922299310719
-
Shapshak P, Segal DM, Crandall KA, Fujimura RK, Zhang BT, et al. (1999) Independent evolution of HIV type 1 in different brain regions. AIDS Res Hum Retroviruses 15: 811-820 doi:10.1089/088922299310719.
-
(1999)
AIDS Res Hum Retroviruses
, vol.15
, pp. 811-820
-
-
Shapshak, P.1
Segal, D.M.2
Crandall, K.A.3
Fujimura, R.K.4
Zhang, B.T.5
-
76
-
-
78649995429
-
HIVBrainSeqDB: a database of annotated HIV envelope sequences from brain and other anatomical sites
-
doi:10.1186/1742-6405-7-43
-
Holman AG, Mefford ME, O'Connor N, Gabuzda D, (2010) HIVBrainSeqDB: a database of annotated HIV envelope sequences from brain and other anatomical sites. AIDS Res Ther 7: 43 doi:10.1186/1742-6405-7-43.
-
(2010)
AIDS Res Ther
, vol.7
, pp. 43
-
-
Holman, A.G.1
Mefford, M.E.2
O'Connor, N.3
Gabuzda, D.4
-
77
-
-
84870785828
-
-
HIV Brain Sequence Database. Available
-
HIV Brain Sequence Database. Available: http://www.hivbrainseqdb.org/. Accessed 17 October 2012.
-
-
-
-
78
-
-
0025822601
-
Nomenclature and research case definitions for neurologic manifestations of human immunodeficiency virus-type 1 (HIV-1) infection. Report of a Working Group of the American Academy of Neurology AIDS Task Force
-
Nomenclature and research case definitions for neurologic manifestations of human immunodeficiency virus-type 1 (HIV-1) infection. Report of a Working Group of the American Academy of Neurology AIDS Task Force
-
Nomenclature and research case definitions for neurologic manifestations of human immunodeficiency virus-type 1 (HIV-1) infection. Report of a Working Group of the American Academy of Neurology AIDS Task Force (1991) Nomenclature and research case definitions for neurologic manifestations of human immunodeficiency virus-type 1 (HIV-1) infection. Report of a Working Group of the American Academy of Neurology AIDS Task Force. Neurology 41: 778-785.
-
(1991)
Neurology
, vol.41
, pp. 778-785
-
-
-
79
-
-
0024341852
-
A cladistic measure of gene flow inferred from the phylogenies of alleles
-
Slatkin M, Maddison WP, (1989) A cladistic measure of gene flow inferred from the phylogenies of alleles. Genetics 123: 603-613.
-
(1989)
Genetics
, vol.123
, pp. 603-613
-
-
Slatkin, M.1
Maddison, W.P.2
-
80
-
-
15844406550
-
HyPhy: hypothesis testing using phylogenies
-
doi:10.1093/bioinformatics/bti079
-
Pond SLK, Frost SDW, Muse SV, (2005) HyPhy: hypothesis testing using phylogenies. Bioinformatics 21: 676-679 doi:10.1093/bioinformatics/bti079.
-
(2005)
Bioinformatics
, vol.21
, pp. 676-679
-
-
Pond, S.L.K.1
Frost, S.D.W.2
Muse, S.V.3
-
81
-
-
34249938830
-
Comparative study of methods for detecting sequence compartmentalization in human immunodeficiency virus type 1
-
doi:10.1128/JVI.02268-06
-
Zárate S, Pond SLK, Shapshak P, Frost SDW, (2007) Comparative study of methods for detecting sequence compartmentalization in human immunodeficiency virus type 1. J Virol 81: 6643-6651 doi:10.1128/JVI.02268-06.
-
(2007)
J Virol
, vol.81
, pp. 6643-6651
-
-
Zárate, S.1
Pond, S.L.K.2
Shapshak, P.3
Frost, S.D.W.4
-
82
-
-
84870803353
-
-
LANL HIV Databases. Available
-
LANL HIV Databases. Available: http://www.hiv.lanl.gov. Accessed 11 April 2012.
-
-
-
-
83
-
-
13444259388
-
TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics
-
doi:10.1186/1471-2148-4-18
-
Jobb G, von Haeseler A, Strimmer K, (2004) TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evol Biol 4: 18 doi:10.1186/1471-2148-4-18.
-
(2004)
BMC Evol Biol
, vol.4
, pp. 18
-
-
Jobb, G.1
von Haeseler, A.2
Strimmer, K.3
-
84
-
-
0031743421
-
Profile hidden Markov models
-
Eddy SR, (1998) Profile hidden Markov models. Bioinformatics 14: 755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
86
-
-
38549155006
-
AAindex: amino acid index database, progress report 2008
-
doi:10.1093/nar/gkm998
-
Kawashima S, Pokarowski P, Pokarowska M, Kolinski A, Katayama T, et al. (2008) AAindex: amino acid index database, progress report 2008. Nucleic Acids Res 36: D202-D205 doi:10.1093/nar/gkm998.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Kawashima, S.1
Pokarowski, P.2
Pokarowska, M.3
Kolinski, A.4
Katayama, T.5
-
87
-
-
84869127986
-
-
C4.5. San Mateo: Morgan Kaufmann
-
Quinlan JR (1993) C4.5. San Mateo: Morgan Kaufmann. 302 p.
-
(1993)
, pp. 302
-
-
Quinlan, J.R.1
-
89
-
-
3042532685
-
Filter versus wrapper gene selection approaches in DNA microarray domains
-
doi:10.1016/j.artmed.2004.01.007
-
Inza I, Larrañaga P, Blanco R, Cerrolaza AJ, (2004) Filter versus wrapper gene selection approaches in DNA microarray domains. Artif Intell Med 31: 91-103 doi:10.1016/j.artmed.2004.01.007.
-
(2004)
Artif Intell Med
, vol.31
, pp. 91-103
-
-
Inza, I.1
Larrañaga, P.2
Blanco, R.3
Cerrolaza, A.J.4
-
91
-
-
0027442206
-
Identification of HIV1 determinants for T lymphoid cell line infection
-
doi:10.1006/viro.1993.1664
-
Carrillo A, Trowbridge DB, Westervelt P, Ratner L, (1993) Identification of HIV1 determinants for T lymphoid cell line infection. Virology 197: 817-824 doi:10.1006/viro.1993.1664.
-
(1993)
Virology
, vol.197
, pp. 817-824
-
-
Carrillo, A.1
Trowbridge, D.B.2
Westervelt, P.3
Ratner, L.4
-
92
-
-
0025783669
-
Identification of the envelope V3 loop as the primary determinant of cell tropism in HIV-1
-
Hwang SS, Boyle TJ, Lyerly HK, Cullen BR, (1991) Identification of the envelope V3 loop as the primary determinant of cell tropism in HIV-1. Science 253: 71-74.
-
(1991)
Science
, vol.253
, pp. 71-74
-
-
Hwang, S.S.1
Boyle, T.J.2
Lyerly, H.K.3
Cullen, B.R.4
-
93
-
-
0032546952
-
A conserved HIV gp120 glycoprotein structure involved in chemokine receptor binding
-
Rizzuto CD, Wyatt R, Hernández-Ramos N, Sun Y, Kwong PD, et al. (1998) A conserved HIV gp120 glycoprotein structure involved in chemokine receptor binding. Science 280: 1949-1953.
-
(1998)
Science
, vol.280
, pp. 1949-1953
-
-
Rizzuto, C.D.1
Wyatt, R.2
Hernández-Ramos, N.3
Sun, Y.4
Kwong, P.D.5
-
94
-
-
77649195668
-
Compartmentalization and clonal amplification of HIV-1 variants in the cerebrospinal fluid during primary infection
-
doi:10.1128/JVI.01863-09
-
Schnell G, Price RW, Swanstrom R, Spudich S, (2010) Compartmentalization and clonal amplification of HIV-1 variants in the cerebrospinal fluid during primary infection. J Virol 84: 2395-2407 doi:10.1128/JVI.01863-09.
-
(2010)
J Virol
, vol.84
, pp. 2395-2407
-
-
Schnell, G.1
Price, R.W.2
Swanstrom, R.3
Spudich, S.4
-
95
-
-
13744263272
-
Genetic composition of human immunodeficiency virus type 1 in cerebrospinal fluid and blood without treatment and during failing antiretroviral therapy
-
doi:10.1128/JVI.79.3.1772-1788.2005
-
Strain MC, Letendre S, Pillai SK, Russell T, Ignacio CC, et al. (2005) Genetic composition of human immunodeficiency virus type 1 in cerebrospinal fluid and blood without treatment and during failing antiretroviral therapy. J Virol 79: 1772-1788 doi:10.1128/JVI.79.3.1772-1788.2005.
-
(2005)
J Virol
, vol.79
, pp. 1772-1788
-
-
Strain, M.C.1
Letendre, S.2
Pillai, S.K.3
Russell, T.4
Ignacio, C.C.5
-
96
-
-
0028938818
-
Local and global structural properties of the HIV-MN V3 loop
-
Catasti P, Fontenot JD, Bradbury EM, Gupta G, (1995) Local and global structural properties of the HIV-MN V3 loop. J Biol Chem 270: 2224-2232.
-
(1995)
J Biol Chem
, vol.270
, pp. 2224-2232
-
-
Catasti, P.1
Fontenot, J.D.2
Bradbury, E.M.3
Gupta, G.4
-
97
-
-
27744597054
-
Structure of a V3-containing HIV-1 gp120 core
-
doi:10.1126/science.1118398
-
Huang C-C, Tang M, Zhang M-Y, Majeed S, Montabana E, et al. (2005) Structure of a V3-containing HIV-1 gp120 core. Science 310: 1025-1028 doi:10.1126/science.1118398.
-
(2005)
Science
, vol.310
, pp. 1025-1028
-
-
Huang, C.-C.1
Tang, M.2
Zhang, M.-Y.3
Majeed, S.4
Montabana, E.5
-
98
-
-
0025932352
-
Identification of conserved residues in the human immunodeficiency virus type 1 principal neutralizing determinant that are involved in fusion
-
Freed EO, Risser R, (1991) Identification of conserved residues in the human immunodeficiency virus type 1 principal neutralizing determinant that are involved in fusion. AIDS Res Hum Retroviruses 7: 807-811.
-
(1991)
AIDS Res Hum Retroviruses
, vol.7
, pp. 807-811
-
-
Freed, E.O.1
Risser, R.2
-
99
-
-
0035000023
-
Mapping the determinants of the CCR5 amino-terminal sulfopeptide interaction with soluble human immunodeficiency virus type 1 gp120-CD4 complexes
-
doi:10.1128/JVI.75.12.5541-5549.2001
-
Cormier EG, Tran DN, Yukhayeva L, Olson WC, Dragic T, (2001) Mapping the determinants of the CCR5 amino-terminal sulfopeptide interaction with soluble human immunodeficiency virus type 1 gp120-CD4 complexes. J Virol 75: 5541-5549 doi:10.1128/JVI.75.12.5541-5549.2001.
-
(2001)
J Virol
, vol.75
, pp. 5541-5549
-
-
Cormier, E.G.1
Tran, D.N.2
Yukhayeva, L.3
Olson, W.C.4
Dragic, T.5
-
100
-
-
66349098679
-
Compartmentalized human immunodeficiency virus type 1 originates from long-lived cells in some subjects with HIV-1-associated dementia
-
doi:10.1371/journal.ppat.1000395
-
Schnell G, Spudich S, Harrington P, Price RW, Swanstrom R, (2009) Compartmentalized human immunodeficiency virus type 1 originates from long-lived cells in some subjects with HIV-1-associated dementia. PLoS Pathog 5: e1000395 doi:10.1371/journal.ppat.1000395.
-
(2009)
PLoS Pathog
, vol.5
-
-
Schnell, G.1
Spudich, S.2
Harrington, P.3
Price, R.W.4
Swanstrom, R.5
-
101
-
-
62749141506
-
Determinants flanking the CD4 binding loop modulate macrophage tropism of human immunodeficiency virus type 1 R5 envelopes
-
doi:10.1128/JVI.02133-08
-
Duenas-Decamp MJ, Peters PJ, Burton D, Clapham PR, (2009) Determinants flanking the CD4 binding loop modulate macrophage tropism of human immunodeficiency virus type 1 R5 envelopes. J Virol 83: 2575-2583 doi:10.1128/JVI.02133-08.
-
(2009)
J Virol
, vol.83
, pp. 2575-2583
-
-
Duenas-Decamp, M.J.1
Peters, P.J.2
Burton, D.3
Clapham, P.R.4
-
102
-
-
79957833639
-
Conformational alterations in the CD4 binding cavity of HIV-1 gp120 influencing gp120-CD4 interactions and fusogenicity of HIV-1 envelopes derived from brain and other tissues
-
doi:10.1186/1742-4690-8-42
-
Gray L, Sterjovski J, Ramsland PA, Churchill MJ, Gorry PR, (2011) Conformational alterations in the CD4 binding cavity of HIV-1 gp120 influencing gp120-CD4 interactions and fusogenicity of HIV-1 envelopes derived from brain and other tissues. Retrovirology 8: 42 doi:10.1186/1742-4690-8-42.
-
(2011)
Retrovirology
, vol.8
, pp. 42
-
-
Gray, L.1
Sterjovski, J.2
Ramsland, P.A.3
Churchill, M.J.4
Gorry, P.R.5
-
103
-
-
79551700244
-
A conserved determinant in the V1 loop of HIV-1 modulates the V3 loop to prime low CD4 use and macrophage infection
-
doi:10.1128/JVI.02187-10
-
Musich T, Peters PJ, Duenas-Decamp MJ, Gonzalez-Perez MP, Robinson J, et al. (2011) A conserved determinant in the V1 loop of HIV-1 modulates the V3 loop to prime low CD4 use and macrophage infection. J Virol 85: 2397-2405 doi:10.1128/JVI.02187-10.
-
(2011)
J Virol
, vol.85
, pp. 2397-2405
-
-
Musich, T.1
Peters, P.J.2
Duenas-Decamp, M.J.3
Gonzalez-Perez, M.P.4
Robinson, J.5
-
104
-
-
41149099165
-
Variation in HIV-1 R5 macrophage-tropism correlates with sensitivity to reagents that block envelope: CD4 interactions but not with sensitivity to other entry inhibitors
-
doi:10.1186/1742-4690-5-5
-
Peters PJ, Dueñas-Decamp MJ, Sullivan WM, Brown R, Ankghuambom C, et al. (2008) Variation in HIV-1 R5 macrophage-tropism correlates with sensitivity to reagents that block envelope: CD4 interactions but not with sensitivity to other entry inhibitors. Retrovirology 5: 5 doi:10.1186/1742-4690-5-5.
-
(2008)
Retrovirology
, vol.5
, pp. 5
-
-
Peters, P.J.1
Dueñas-Decamp, M.J.2
Sullivan, W.M.3
Brown, R.4
Ankghuambom, C.5
-
105
-
-
77954532945
-
An altered and more efficient mechanism of CCR5 engagement contributes to macrophage tropism of CCR5-using HIV-1 envelopes
-
doi:10.1016/j.virol.2010.05.006
-
Sterjovski J, Roche M, Churchill MJ, Ellett A, Farrugia W, et al. (2010) An altered and more efficient mechanism of CCR5 engagement contributes to macrophage tropism of CCR5-using HIV-1 envelopes. Virology 404: 269-278 doi:10.1016/j.virol.2010.05.006.
-
(2010)
Virology
, vol.404
, pp. 269-278
-
-
Sterjovski, J.1
Roche, M.2
Churchill, M.J.3
Ellett, A.4
Farrugia, W.5
-
106
-
-
33847281316
-
Macrophage entry mediated by HIV Envs from brain and lymphoid tissues is determined by the capacity to use low CD4 levels and overall efficiency of fusion
-
doi:10.1016/j.virol.2006.09.036
-
Thomas ER, Dunfee RL, Stanton J, Bogdan D, Taylor J, et al. (2007) Macrophage entry mediated by HIV Envs from brain and lymphoid tissues is determined by the capacity to use low CD4 levels and overall efficiency of fusion. Virology 360: 105-119 doi:10.1016/j.virol.2006.09.036.
-
(2007)
Virology
, vol.360
, pp. 105-119
-
-
Thomas, E.R.1
Dunfee, R.L.2
Stanton, J.3
Bogdan, D.4
Taylor, J.5
|