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Volumn 11, Issue 5, 2012, Pages 356-365

Regulatory rnas in the light of drosophila genomics

Author keywords

Gene regulation; MiRNA; Non coding RNA; PiRNA; SIRNA; Transposable elements

Indexed keywords

ARGONAUTE 1 PROTEIN; ARGONAUTE 2 PROTEIN; GENOMIC RNA; MICRORNA; PIWI INTERACTING RNA; SMALL INTERFERING RNA; SMALL UNTRANSLATED RNA;

EID: 84867131136     PISSN: 20412649     EISSN: 20412657     Source Type: Journal    
DOI: 10.1093/bfgp/els033     Document Type: Article
Times cited : (9)

References (88)
  • 1
    • 54249116230 scopus 로고
    • Genetic regulatory mechanisms in the synthesis of proteins
    • Jacob F, Monod J. Genetic regulatory mechanisms in the synthesis of proteins. JMol Biol 1961;3:318-56.
    • (1961) J Mol Biol , vol.3 , pp. 318-356
    • Jacob, F.1    Monod, J.2
  • 2
    • 0014690698 scopus 로고
    • Gene regulation for higher cells: a theory
    • Britten RJ, Davidson EH. Gene regulation for higher cells: a theory. Science 1969;165:349-57.
    • (1969) Science , vol.165 , pp. 349-357
    • Britten, R.J.1    Davidson, E.H.2
  • 5
    • 14644393684 scopus 로고    scopus 로고
    • Perspective: machines for RNAi
    • Tomari Y, Zamore PD. Perspective: machines for RNAi. Genes Dev 2005;19:517-29.
    • (2005) Genes Dev , vol.19 , pp. 517-529
    • Tomari, Y.1    Zamore, P.D.2
  • 7
    • 0027751663 scopus 로고
    • The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
    • Lee RC, Feinbaum RL, Ambros V. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 1993;75:843-54.
    • (1993) Cell , vol.75 , pp. 843-854
    • Lee, R.C.1    Feinbaum, R.L.2    Ambros, V.3
  • 8
    • 0027730383 scopus 로고
    • Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans
    • Wightman B, Ha I, Ruvkun G. Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans. Cell 1993;75: 855-62.
    • (1993) Cell , vol.75 , pp. 855-862
    • Wightman, B.1    Ha, I.2    Ruvkun, G.3
  • 10
    • 0018240421 scopus 로고
    • A gene complex controlling segmentation in Drosophila
    • Lewis EB. A gene complex controlling segmentation in Drosophila. Nature 1978;276:565-70.
    • (1978) Nature , vol.276 , pp. 565-570
    • Lewis, E.B.1
  • 11
    • 0029113198 scopus 로고
    • Complete sequence of the bithorax complex of Drosophila
    • Martin CH, Mayeda CA, Davis CA, et al. Complete sequence of the bithorax complex of Drosophila. Proc Natl Acad SciUSA 1995;92:8398-402.
    • (1995) Proc Natl Acad SciUSA , vol.92 , pp. 8398-8402
    • Martin, C.H.1    Mayeda, C.A.2    Davis, C.A.3
  • 12
    • 0023332565 scopus 로고
    • Novel transcripts from the Ultrabithorax domain of the bithorax complex
    • Lipshitz HD, Peattie DA, Hogness DS. Novel transcripts from the Ultrabithorax domain of the bithorax complex. Genes Dev 1987;1:307-22.
    • (1987) Genes Dev , vol.1 , pp. 307-322
    • Lipshitz, H.D.1    Peattie, D.A.2    Hogness, D.S.3
  • 13
    • 28844435684 scopus 로고    scopus 로고
    • Drosophila melanogaster: a case study of a model genomic sequence and its consequences
    • Ashburner M, Bergman CM. Drosophila melanogaster: a case study of a model genomic sequence and its consequences. GenomeRes 2005;15:1661-7.
    • (2005) GenomeRes , vol.15 , pp. 1661-1667
    • Ashburner, M.1    Bergman, C.M.2
  • 15
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • Bartel DP. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004;116:281-97.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 16
    • 77955902024 scopus 로고    scopus 로고
    • The widespread regulation of microRNA biogenesis, function and decay
    • Krol J, Loedige I, Filipowicz W. The widespread regulation of microRNA biogenesis, function and decay. Nat Rev Genet 2010;11:597-610.
    • (2010) Nat Rev Genet , vol.11 , pp. 597-610
    • Krol, J.1    Loedige, I.2    Filipowicz, W.3
  • 17
    • 22744454230 scopus 로고    scopus 로고
    • Processing of premicroRNAs by the Dicer-1-Loquacious complex in Drosophila cells
    • Saito K, Ishizuka A, Siomi H, et al. Processing of premicroRNAs by the Dicer-1-Loquacious complex in Drosophila cells. PLoS Biol 2005;3:e235.
    • (2005) PLoS Biol , vol.3
    • Saito, K.1    Ishizuka, A.2    Siomi, H.3
  • 18
    • 34447291764 scopus 로고    scopus 로고
    • Drosophila microRNAs are sorted into functionally distinct Argonaute complexes after production by Dicer-1
    • Förstemann K, Horwich MD, Wee L, et al. Drosophila microRNAs are sorted into functionally distinct Argonaute complexes after production by Dicer-1. Cell 2007;130:287-97.
    • (2007) Cell , vol.130 , pp. 287-297
    • Förstemann, K.1    Horwich, M.D.2    Wee, L.3
  • 19
    • 0034708122 scopus 로고    scopus 로고
    • The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans
    • Reinhart BJ, Slack FJ, Basson M, et al. The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans. Nature 2000;403:901-6.
    • (2000) Nature , vol.403 , pp. 901-906
    • Reinhart, B.J.1    Slack, F.J.2    Basson, M.3
  • 20
    • 0034708480 scopus 로고    scopus 로고
    • The genome sequence of Drosophila melanogaster
    • Adams MD, Celniker SE, Holt RA, et al. The genome sequence of Drosophila melanogaster. Science 2000;287: 2185-95.
    • (2000) Science , vol.287 , pp. 2185-2195
    • Adams, M.D.1    Celniker, S.E.2    Holt, R.A.3
  • 21
    • 0034597777 scopus 로고    scopus 로고
    • Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA
    • Pasquinelli AE, Reinhart BJ, Slack F, et al. Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA. Nature 2000;408:86-9.
    • (2000) Nature , vol.408 , pp. 86-89
    • Pasquinelli, A.E.1    Reinhart, B.J.2    Slack, F.3
  • 22
    • 0035955374 scopus 로고    scopus 로고
    • Identification of novel genes coding for small expressed RNAs
    • Lagos-Quintana M, Rauhut R, Lendeckel W, et al. Identification of novel genes coding for small expressed RNAs. Science 2001;294:853-8.
    • (2001) Science , vol.294 , pp. 853-858
    • Lagos-Quintana, M.1    Rauhut, R.2    Lendeckel, W.3
  • 23
    • 0035955361 scopus 로고    scopus 로고
    • An Abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    • Lau NC, Lim LP, Weinstein EG, et al. An Abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 2001;294:858-62.
    • (2001) Science , vol.294 , pp. 858-862
    • Lau, N.C.1    Lim, L.P.2    Weinstein, E.G.3
  • 24
    • 0035955366 scopus 로고    scopus 로고
    • An extensive class of small RNAs in Caenorhabditis elegans
    • Lee RC, Ambros V. An extensive class of small RNAs in Caenorhabditis elegans. Science 2001;294:862-64.
    • (2001) Science , vol.294 , pp. 862-864
    • Lee, R.C.1    Ambros, V.2
  • 25
    • 0038825783 scopus 로고    scopus 로고
    • Computational identification of Drosophila microRNA genes
    • Lai EC, Tomancak P, Williams RW, et al. Computational identification of Drosophila microRNA genes. Genome Biol 2003;4:R42.
    • (2003) Genome Biol , vol.4
    • Lai, E.C.1    Tomancak, P.2    Williams, R.W.3
  • 27
    • 4243170045 scopus 로고    scopus 로고
    • Identification of Drosophila microRNA targets
    • Stark A, Brennecke J, Russell RB, et al. Identification of Drosophila microRNA targets. PLoS Biol 2003;1:E60.
    • (2003) PLoS Biol , vol.1
    • Stark, A.1    Brennecke, J.2    Russell, R.B.3
  • 28
    • 47149117454 scopus 로고    scopus 로고
    • Evolution of genes and genomes on the Drosophila phylogeny
    • Clark AG, Eisen MB, Smith DR, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature 2007; 450:203-18.
    • (2007) Nature , vol.450 , pp. 203-218
    • Clark, A.G.1    Eisen, M.B.2    Smith, D.R.3
  • 29
    • 38149071979 scopus 로고    scopus 로고
    • Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    • Ruby JG, Stark A, Johnston WK, et al. Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs. Genome Res 2007;17:1850-64.
    • (2007) Genome Res , vol.17 , pp. 1850-1864
    • Ruby, J.G.1    Stark, A.2    Johnston, W.K.3
  • 30
    • 37249025294 scopus 로고    scopus 로고
    • Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    • Stark A, Kheradpour P, Parts L, et al. Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes. Genome Res 2007;17:1865-79.
    • (2007) Genome Res , vol.17 , pp. 1865-1879
    • Stark, A.1    Kheradpour, P.2    Parts, L.3
  • 31
    • 36049018312 scopus 로고    scopus 로고
    • Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
    • Stark A, Lin MF, Kheradpour P, et al. Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. Nature 2007;450:219-32.
    • (2007) Nature , vol.450 , pp. 219-232
    • Stark, A.1    Lin, M.F.2    Kheradpour, P.3
  • 32
    • 34447097693 scopus 로고    scopus 로고
    • Intronic microRNA precursors that bypass Drosha processing
    • Ruby JG, Jan CH, Bartel DP. Intronic microRNA precursors that bypass Drosha processing. Nature 2007; 448:83-6.
    • (2007) Nature , vol.448 , pp. 83-86
    • Ruby, J.G.1    Jan, C.H.2    Bartel, D.P.3
  • 33
    • 34447107760 scopus 로고    scopus 로고
    • The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila
    • Okamura K, Hagen JW, Duan H, et al. The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila. Cell 2007;130:89-100.
    • (2007) Cell , vol.130 , pp. 89-100
    • Okamura, K.1    Hagen, J.W.2    Duan, H.3
  • 34
    • 38849171836 scopus 로고    scopus 로고
    • Reliable prediction of regulator targets using 12 Drosophila genomes
    • Kheradpour P, Stark A, Roy S, et al. Reliable prediction of regulator targets using 12 Drosophila genomes. GenomeRes 2007;17:1919-31.
    • (2007) GenomeRes , vol.17 , pp. 1919-1931
    • Kheradpour, P.1    Stark, A.2    Roy, S.3
  • 35
    • 78650331647 scopus 로고    scopus 로고
    • Identification of functional elements and regulatory circuits by Drosophila modENCODE
    • Roy S, Ernst J, Kharchenko PV, et al. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science 2010;330:1787-97.
    • (2010) Science , vol.330 , pp. 1787-1797
    • Roy, S.1    Ernst, J.2    Kharchenko, P.V.3
  • 36
    • 79551586302 scopus 로고    scopus 로고
    • Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
    • Berezikov E, Robine N, Samsonova A, et al. Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence. Genome Res 2011;21:203-15.
    • (2011) Genome Res , vol.21 , pp. 203-215
    • Berezikov, E.1    Robine, N.2    Samsonova, A.3
  • 37
    • 78651293534 scopus 로고    scopus 로고
    • Griffiths-Jones S. miRBase: integrating microRNA annotation and deep-sequencing data
    • Kozomara A, Griffiths-Jones S. miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res 2011;39:D152-7.
    • (2011) Nucleic Acids Res , vol.39
    • Kozomara, A.1
  • 38
    • 39749083331 scopus 로고    scopus 로고
    • The birth and death of microRNA genes in Drosophila
    • Lu J, Shen Y, Wu Q, et al. The birth and death of microRNA genes in Drosophila. Nat Genet 2008;40:351-5.
    • (2008) Nat Genet , vol.40 , pp. 351-355
    • Lu, J.1    Shen, Y.2    Wu, Q.3
  • 39
    • 73349122299 scopus 로고    scopus 로고
    • Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    • Berezikov E, Liu N, Flynt AS, et al. Evolutionary flux of canonical microRNAs and mirtrons in Drosophila. Nat Genet 2010;42:6-9.
    • (2010) Nat Genet , vol.42 , pp. 6-9
    • Berezikov, E.1    Liu, N.2    Flynt, A.S.3
  • 40
    • 77958462907 scopus 로고    scopus 로고
    • Origins and evolution of microRNA genes in Drosophila species
    • Nozawa M, Miura S, Nei M. Origins and evolution of microRNA genes in Drosophila species. Genome Biol Evol 2010;2:180-9.
    • (2010) Genome Biol Evol , vol.2 , pp. 180-189
    • Nozawa, M.1    Miura, S.2    Nei, M.3
  • 41
    • 33845608152 scopus 로고    scopus 로고
    • The phylogenetic distribution of metazoan microRNAs: insights into evolutionary complexity and constraint
    • Sempere LF, Cole CN, McPeek MA, et al. The phylogenetic distribution of metazoan microRNAs: insights into evolutionary complexity and constraint. J Exp Zool B Mol Dev Evol 2006;306:575-88.
    • (2006) J Exp Zool B Mol Dev Evol , vol.306 , pp. 575-588
    • Sempere, L.F.1    Cole, C.N.2    McPeek, M.A.3
  • 42
    • 58549086017 scopus 로고    scopus 로고
    • The deep evolution of metazoan microRNAs
    • Wheeler B, Heimberg A, Moy V, et al. The deep evolution of metazoan microRNAs. EvolDev 2009;11:50-68.
    • (2009) EvolDev , vol.11 , pp. 50-68
    • Wheeler, B.1    Heimberg, A.2    Moy, V.3
  • 43
    • 77958474656 scopus 로고    scopus 로고
    • Functional shifts in insect microRNA evolution
    • Marco A, Hui JHL, Ronshaugen M, et al. Functional shifts in insect microRNA evolution. Genome Biol Evol 2010;2: 686-96.
    • (2010) Genome Biol Evol , vol.2 , pp. 686-696
    • Marco, A.1    Hui, J.H.L.2    Ronshaugen, M.3
  • 44
    • 70350705948 scopus 로고    scopus 로고
    • Repertoire and evolution of miRNA genes in four divergent nematode species
    • de Wit E, Linsen SEV, Cuppen E, et al. Repertoire and evolution of miRNA genes in four divergent nematode species. Genome Res 2009;19:2064-74.
    • (2009) Genome Res , vol.19 , pp. 2064-2074
    • de Wit, E.1    Linsen, S.E.V.2    Cuppen, E.3
  • 45
  • 46
    • 84860779005 scopus 로고    scopus 로고
    • Evolution and function of the extended miR-2 microRNA family
    • Marco A, Hooks K, Griffiths-Jones S. Evolution and function of the extended miR-2 microRNA family. RNA Biol 2012;9:242-8.
    • (2012) RNA Biol , vol.9 , pp. 242-248
    • Marco, A.1    Hooks, K.2    Griffiths-Jones, S.3
  • 47
    • 58449134534 scopus 로고    scopus 로고
    • Small silencing RNAs: an expanding universe
    • Ghildiyal M, Zamore PD. Small silencing RNAs: an expanding universe. Nat Rev Genet 2009;10:94-108.
    • (2009) Nat Rev Genet , vol.10 , pp. 94-108
    • Ghildiyal, M.1    Zamore, P.D.2
  • 48
    • 33845436047 scopus 로고    scopus 로고
    • Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    • Ruby JG, Jan C, Player C, et al. Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans. Cell 2006;127:1193-207.
    • (2006) Cell , vol.127 , pp. 1193-1207
    • Ruby, J.G.1    Jan, C.2    Player, C.3
  • 49
    • 44349104241 scopus 로고    scopus 로고
    • An endogenous small interfering RNA pathway in Drosophila
    • Czech B, Malone CD, Zhou R, et al. An endogenous small interfering RNA pathway in Drosophila. Nature 2008;453: 798-802.
    • (2008) Nature , vol.453 , pp. 798-802
    • Czech, B.1    Malone, C.D.2    Zhou, R.3
  • 50
    • 44349174824 scopus 로고    scopus 로고
    • Endogenous RNA interference provides a somatic defense against Drosophila transposons
    • Chung W-J, Okamura K, Martin R, et al. Endogenous RNA interference provides a somatic defense against Drosophila transposons. Curr Biol 2008;18:795-802.
    • (2008) Curr Biol , vol.18 , pp. 795-802
    • Chung, W.-J.1    Okamura, K.2    Martin, R.3
  • 51
    • 44349084754 scopus 로고    scopus 로고
    • The Drosophila hairpin RNA pathway generates endogenous short interfering RNAs
    • Okamura K, Chung W-J, Ruby JG, et al. The Drosophila hairpin RNA pathway generates endogenous short interfering RNAs. Nature 2008;453:803-6.
    • (2008) Nature , vol.453 , pp. 803-806
    • Okamura, K.1    Chung, W.-J.2    Ruby, J.G.3
  • 53
    • 34250873404 scopus 로고    scopus 로고
    • Sequence finishing and mapping of Drosophila melanogaster heterochromatin
    • Hoskins RA, Carlson JW, Kennedy C, et al. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Science 2007;316:1625-8.
    • (2007) Science , vol.316 , pp. 1625-1628
    • Hoskins, R.A.1    Carlson, J.W.2    Kennedy, C.3
  • 54
    • 44349101881 scopus 로고    scopus 로고
    • Two distinct mechanisms generate endogenous siRNAs from bidirectional transcription in Drosophila melanogaster
    • Okamura K, Balla S, Martin R, et al. Two distinct mechanisms generate endogenous siRNAs from bidirectional transcription in Drosophila melanogaster. Nat Struct Mol Biol 2008;15:581-90.
    • (2008) Nat Struct Mol Biol , vol.15 , pp. 581-590
    • Okamura, K.1    Balla, S.2    Martin, R.3
  • 55
    • 0041941514 scopus 로고    scopus 로고
    • The small RNA profile during Drosophila melanogaster development
    • Aravin AA, Lagos-Quintana M, Yalcin A, et al. The small RNA profile during Drosophila melanogaster development. Dev Cell 2003;5:337-50.
    • (2003) Dev Cell , vol.5 , pp. 337-350
    • Aravin, A.A.1    Lagos-Quintana, M.2    Yalcin, A.3
  • 56
    • 36048937264 scopus 로고    scopus 로고
    • An epigenetic activation role of Piwi and a Piwi-associated piRNA in Drosophila melanogaster
    • Yin H, Lin H. An epigenetic activation role of Piwi and a Piwi-associated piRNA in Drosophila melanogaster. Nature 2007;450:304-8.
    • (2007) Nature , vol.450 , pp. 304-308
    • Yin, H.1    Lin, H.2
  • 57
    • 78149481868 scopus 로고    scopus 로고
    • The piRNA pathway: a fly's perspective on the guardian of the genome
    • Senti K-A, Brennecke J. The piRNA pathway: a fly's perspective on the guardian of the genome. Trends Genet 2010; 26:499-509.
    • (2010) Trends Genet , vol.26 , pp. 499-509
    • Senti, K.-A.1    Brennecke, J.2
  • 58
    • 0032954098 scopus 로고    scopus 로고
    • Taming of transposable elements by homology-dependent gene silencing
    • Jensen S, Gassama M-P, Heidmann T. Taming of transposable elements by homology-dependent gene silencing. Nat Genet 1999;21:209-12.
    • (1999) Nat Genet , vol.21 , pp. 209-212
    • Jensen, S.1    Gassama, M.-P.2    Heidmann, T.3
  • 59
    • 0036861669 scopus 로고    scopus 로고
    • Regulation of I-transposon activity in Drosophila: evidence for cosuppression of nonhomologous transgenes and possible role of ancestral I-related pericentromeric elements
    • Jensen S, Gassama M-P, Dramard X, et al. Regulation of I-transposon activity in Drosophila: evidence for cosuppression of nonhomologous transgenes and possible role of ancestral I-related pericentromeric elements. Genetics 2002; 162:1197-209.
    • (2002) Genetics , vol.162 , pp. 1197-1209
    • Jensen, S.1    Gassama, M.-P.2    Dramard, X.3
  • 60
    • 0037786824 scopus 로고    scopus 로고
    • COM, a heterochromatic locus governing the control of independent endogenous retroviruses from Drosophila melanogaster
    • Desset S, Meignin C, Dastugue B, et al. COM, a heterochromatic locus governing the control of independent endogenous retroviruses from Drosophila melanogaster. Genetics 2003;164:501-9.
    • (2003) Genetics , vol.164 , pp. 501-509
    • Desset, S.1    Meignin, C.2    Dastugue, B.3
  • 61
    • 33847749916 scopus 로고    scopus 로고
    • Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome
    • Bergman CM, Quesneville H, Anxolabéhère D, et al. Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome. Genome Biol 2006;7:R112.
    • (2006) Genome Biol , vol.7
    • Bergman, C.M.1    Quesneville, H.2    Anxolabéhère, D.3
  • 62
    • 33947390781 scopus 로고    scopus 로고
    • A slicer-mediated mechanism for repeat-associated siRNA 5' end formation in Drosophila
    • Gunawardane LS, Saito K, Nishida KM, et al. A slicer-mediated mechanism for repeat-associated siRNA 5' end formation in Drosophila. Science 2007;315: 1587-90.
    • (2007) Science , vol.315 , pp. 1587-1590
    • Gunawardane, L.S.1    Saito, K.2    Nishida, K.M.3
  • 63
    • 33947273235 scopus 로고    scopus 로고
    • Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila
    • Brennecke J, Aravin AA, Stark A, et al. Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell 2007;128:1089-1103.
    • (2007) Cell , vol.128 , pp. 1089-1103
    • Brennecke, J.1    Aravin, A.A.2    Stark, A.3
  • 64
    • 65549118489 scopus 로고    scopus 로고
    • Collapse of germline piRNAs in the absence of argonaute3 reveals somatic piRNAs in flies
    • Li C, Vagin VV, Lee S, et al. Collapse of germline piRNAs in the absence of argonaute3 reveals somatic piRNAs in flies. Cell 2009;137:509-21.
    • (2009) Cell , vol.137 , pp. 509-521
    • Li, C.1    Vagin, V.V.2    Lee, S.3
  • 65
    • 75649145014 scopus 로고    scopus 로고
    • Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila
    • Lu J, Clark AG. Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila. Genome Res 2010;20:212-27.
    • (2010) Genome Res , vol.20 , pp. 212-227
    • Lu, J.1    Clark, A.G.2
  • 66
    • 0028795178 scopus 로고
    • Flamenco, a gene controlling the gypsy retrovirus of Drosophila melanogaster
    • Prud'homme N, Gans M, Masson M, et al. Flamenco, a gene controlling the gypsy retrovirus of Drosophila melanogaster. Genetics 1995;139:697-711.
    • (1995) Genetics , vol.139 , pp. 697-711
    • Prud'homme, N.1    Gans, M.2    Masson, M.3
  • 68
    • 57149104113 scopus 로고    scopus 로고
    • An epigenetic role for maternally inherited piRNAs in transposon silencing
    • Brennecke J, Malone CD, Aravin AA, et al. An epigenetic role for maternally inherited piRNAs in transposon silencing. Science 2008;322:1387-92.
    • (2008) Science , vol.322 , pp. 1387-1392
    • Brennecke, J.1    Malone, C.D.2    Aravin, A.A.3
  • 69
    • 65549105694 scopus 로고    scopus 로고
    • Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary
    • Malone CD, Brennecke J, Dus M, et al. Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovary. Cell 2009;137:522-35.
    • (2009) Cell , vol.137 , pp. 522-535
    • Malone, C.D.1    Brennecke, J.2    Dus, M.3
  • 70
    • 70349641600 scopus 로고    scopus 로고
    • Abundant primary piRNAs, endo-siRNAs, and microRNAs in a Drosophila ovary cell line
    • Lau N, Robine N, Martin R, et al. Abundant primary piRNAs, endo-siRNAs, and microRNAs in a Drosophila ovary cell line. Genome Res 2009;19:1776-85.
    • (2009) Genome Res , vol.19 , pp. 1776-1785
    • Lau, N.1    Robine, N.2    Martin, R.3
  • 71
    • 38849167412 scopus 로고    scopus 로고
    • Biogenesis and germline functions of piRNAs
    • Klattenhoff C, Theurkauf W. Biogenesis and germline functions of piRNAs. Development 2008;135:3-9.
    • (2008) Development , vol.135 , pp. 3-9
    • Klattenhoff, C.1    Theurkauf, W.2
  • 72
    • 84867122289 scopus 로고    scopus 로고
    • Role of piRNAs in the Drosophila telomere homeostasis
    • Shpiz S, Kalmykova A. Role of piRNAs in the Drosophila telomere homeostasis. Mob Genet Elements 2011;1:274-8.
    • (2011) Mob Genet Elements , vol.1 , pp. 274-278
    • Shpiz, S.1    Kalmykova, A.2
  • 73
    • 84861322245 scopus 로고    scopus 로고
    • HeT-A_pi1, a piRNA target sequence in the Drosophila telomeric retrotransposon HeT-A, is extremely conserved across copies and species
    • Petit N, Piñero D, López-Panadès E, et al. HeT-A_pi1, a piRNA target sequence in the Drosophila telomeric retrotransposon HeT-A, is extremely conserved across copies and species. PLoS One 2012;7:e37405.
    • (2012) PLoS One , vol.7
    • Petit, N.1    Piñero, D.2    López-Panadès, E.3
  • 74
  • 75
    • 0030461398 scopus 로고    scopus 로고
    • Requirement for a noncoding RNA in Drosophila polar granules for germ cell establishment
    • Nakamura A, Amikura R, Mukai M, et al. Requirement for a noncoding RNA in Drosophila polar granules for germ cell establishment. Science 1996;274:2075-9.
    • (1996) Science , vol.274 , pp. 2075-2079
    • Nakamura, A.1    Amikura, R.2    Mukai, M.3
  • 76
    • 0033166348 scopus 로고    scopus 로고
    • The rox1 and rox2 RNAs are essential components of the compensasome, which mediates dosage compensation in Drosophila
    • Franke A, Baker BS. The rox1 and rox2 RNAs are essential components of the compensasome, which mediates dosage compensation in Drosophila. Mol Cell 1999;4: 117-22.
    • (1999) Mol Cell , vol.4 , pp. 117-122
    • Franke, A.1    Baker, B.S.2
  • 77
    • 0030133914 scopus 로고    scopus 로고
    • The 93D (hsr-omega) locus of Drosophila: non-coding gene with house-keeping functions
    • Lakhotia SC, Sharma A. The 93D (hsr-omega) locus of Drosophila: non-coding gene with house-keeping functions. Genetica 1996;97:339-48.
    • (1996) Genetica , vol.97 , pp. 339-348
    • Lakhotia, S.C.1    Sharma, A.2
  • 78
    • 0037007062 scopus 로고    scopus 로고
    • Origin of sphinx, a young chimeric RNA gene in Drosophila melanogaster
    • Wang W, Brunet FG, Nevo E, et al. Origin of sphinx, a young chimeric RNA gene in Drosophila melanogaster. ProcNatl Acad SciUSA 2002;99:4448-53.
    • (2002) ProcNatl Acad SciUSA , vol.99 , pp. 4448-4453
    • Wang, W.1    Brunet, F.G.2    Nevo, E.3
  • 79
    • 80053984236 scopus 로고    scopus 로고
    • A conserved long noncoding RNA affects sleep behavior in Drosophila
    • Soshnev AA, Ishimoto H, McAllister BF, et al. A conserved long noncoding RNA affects sleep behavior in Drosophila. Genetics 2011;189:455-468.
    • (2011) Genetics , vol.189 , pp. 455-468
    • Soshnev, A.A.1    Ishimoto, H.2    McAllister, B.F.3
  • 80
    • 29244485152 scopus 로고    scopus 로고
    • Identification and expression analysis of putative mRNA-like non-coding RNA in Drosophila
    • Inagaki S, Numata K, Kondo T, et al. Identification and expression analysis of putative mRNA-like non-coding RNA in Drosophila. Genes Cells 2005;10:1163-73.
    • (2005) Genes Cells , vol.10 , pp. 1163-1173
    • Inagaki, S.1    Numata, K.2    Kondo, T.3
  • 81
    • 17244364714 scopus 로고    scopus 로고
    • Identification of putative noncoding polyadenylated transcripts in Drosophila melanogaster
    • Tupy JL, Bailey AM, Dailey G, et al. Identification of putative noncoding polyadenylated transcripts in Drosophila melanogaster. Proc Natl Acad Sci USA 2005;102: 5495-500.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 5495-5500
    • Tupy, J.L.1    Bailey, A.M.2    Dailey, G.3
  • 82
    • 33749153857 scopus 로고    scopus 로고
    • Biological function of unannotated transcription during the early development of Drosophila melanogaster
    • Manak JR, Dike S, Sementchenko V, et al. Biological function of unannotated transcription during the early development of Drosophila melanogaster. Nat Genet 2006;38: 1151-8.
    • (2006) Nat Genet , vol.38 , pp. 1151-1158
    • Manak, J.R.1    Dike, S.2    Sementchenko, V.3
  • 83
    • 67949086754 scopus 로고    scopus 로고
    • Detection of intergenic non-coding RNAs expressed in the main developmental stages in Drosophila melanogaster
    • Li Z, Liu M, Zhang L, et al. Detection of intergenic non-coding RNAs expressed in the main developmental stages in Drosophila melanogaster. Nucleic Acids Res 2009; 37:4308-14.
    • (2009) Nucleic Acids Res , vol.37 , pp. 4308-4314
    • Li, Z.1    Liu, M.2    Zhang, L.3
  • 84
    • 0037133945 scopus 로고    scopus 로고
    • Computational genomics of noncoding RNA genes
    • Eddy SR. Computational genomics of noncoding RNA genes. Cell 2002;109:137-40.
    • (2002) Cell , vol.109 , pp. 137-140
    • Eddy, S.R.1
  • 86
    • 33745585334 scopus 로고    scopus 로고
    • Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression
    • Levine MT, Jones CD, Kern AD, et al. Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression. Proc Natl Acad SciUSA 2006;103:9935-9.
    • (2006) Proc Natl Acad SciUSA , vol.103 , pp. 9935-9939
    • Levine, M.T.1    Jones, C.D.2    Kern, A.D.3
  • 87
    • 33751520430 scopus 로고    scopus 로고
    • Natural selection on human microRNA binding sites inferred from SNP data
    • Chen K, Rajewsky N. Natural selection on human microRNA binding sites inferred from SNP data. Nat Genet 2006;38:1452-6.
    • (2006) Nat Genet , vol.38 , pp. 1452-1456
    • Chen, K.1    Rajewsky, N.2
  • 88
    • 33847665108 scopus 로고    scopus 로고
    • Human polymorphism at microRNAs and microRNA target sites
    • Saunders MA, Liang H, Li W-H. Human polymorphism at microRNAs and microRNA target sites. Proc Natl Acad Sci USA 2007;104:3300-5.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 3300-3305
    • Saunders, M.A.1    Liang, H.2    Li, W.-H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.