-
1
-
-
0035656688
-
Non-coding RNA genes and the modern RNA world
-
Eddy,S.R. (2001) Non-coding RNA genes and the modern RNA world. Nat. Rev. Genet., 2, 919-929.
-
(2001)
Nat. Rev. Genet
, vol.2
, pp. 919-929
-
-
Eddy, S.R.1
-
2
-
-
0037245939
-
Noncoding regulatory RNAs database
-
Szymanski,M., Erdmann,V.A. and Barciszewski,J. (2003) Noncoding regulatory RNAs database. Nucleic Acids Res., 31, 429-431.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 429-431
-
-
Szymanski, M.1
Erdmann, V.A.2
Barciszewski, J.3
-
3
-
-
29244485152
-
Identification and expression analysis of putative mRNA-like non-coding RNA in Drosophila
-
Inagaki,S., Numata,K., Kondo,T., Tomita,M., Yasuda,K., Kanai,A. and Kageyama,Y. (2005) Identification and expression analysis of putative mRNA-like non-coding RNA in Drosophila. Genes Cells, 10, 1163-1173.
-
(2005)
Genes Cells
, vol.10
, pp. 1163-1173
-
-
Inagaki, S.1
Numata, K.2
Kondo, T.3
Tomita, M.4
Yasuda, K.5
Kanai, A.6
Kageyama, Y.7
-
5
-
-
30044435097
-
Organization of the Caenorhabditis elegans small non-coding transcriptome: Genomic features, biogenesis, and expression
-
Deng,W., Zhu,X., Skogerbo,G., Zhao,Y., Fu,Z., Wang,Y., He,H., Cai,L., Sun,H., Liu,C. et al. (2006) Organization of the Caenorhabditis elegans small non-coding transcriptome: Genomic features, biogenesis, and expression. Genome Res., 16, 20-29.
-
(2006)
Genome Res
, vol.16
, pp. 20-29
-
-
Deng, W.1
Zhu, X.2
Skogerbo, G.3
Zhao, Y.4
Fu, Z.5
Wang, Y.6
He, H.7
Cai, L.8
Sun, H.9
Liu, C.10
-
6
-
-
30044434769
-
Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome
-
Ravasi,T., Suzuki,H., Pang,K.C., Katayama,S., Furuno,M., Okunishi,R., Fukuda,S., Ru,K., Frith,M.C., Gongora,M.M. et al. (2006) Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome. Genome Res., 16, 11-19.
-
(2006)
Genome Res
, vol.16
, pp. 11-19
-
-
Ravasi, T.1
Suzuki, H.2
Pang, K.C.3
Katayama, S.4
Furuno, M.5
Okunishi, R.6
Fukuda, S.7
Ru, K.8
Frith, M.C.9
Gongora, M.M.10
-
7
-
-
33748675254
-
An RNA gene expressed during cortical development evolved rapidly in humans
-
Pollard,K.S., Salama,S.R., Lambert,N., Lambot,M.A., Coppens,S., Pedersen,J.S., Katzman,S., King,B., Onodera,C., Siepel,A. et al. (2006) An RNA gene expressed during cortical development evolved rapidly in humans. Nature, 443, 167-172.
-
(2006)
Nature
, vol.443
, pp. 167-172
-
-
Pollard, K.S.1
Salama, S.R.2
Lambert, N.3
Lambot, M.A.4
Coppens, S.5
Pedersen, J.S.6
Katzman, S.7
King, B.8
Onodera, C.9
Siepel, A.10
-
8
-
-
33747798962
-
Non-coding RNA in fly dosage compensation
-
Deng,X. and Meller,V.H. (2006) Non-coding RNA in fly dosage compensation. Trends. Biochem. Sci., 31, 526-532.
-
(2006)
Trends. Biochem. Sci
, vol.31
, pp. 526-532
-
-
Deng, X.1
Meller, V.H.2
-
9
-
-
1142281988
-
A noncoding RNA is required for the repression of RNApolII-dependent transcription in primordial germ cells
-
Martinho,R.G., Kunwar,P.S., Casanova,J. and Lehmann,R. (2004) A noncoding RNA is required for the repression of RNApolII-dependent transcription in primordial germ cells. Curr. Biol., 14, 159-165.
-
(2004)
Curr. Biol
, vol.14
, pp. 159-165
-
-
Martinho, R.G.1
Kunwar, P.S.2
Casanova, J.3
Lehmann, R.4
-
10
-
-
0002636459
-
Annotation of the Drosophila melanogaster euchromatic genome: A systematic review
-
RESEARCH0083
-
Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E. et al. (2002) Annotation of the Drosophila melanogaster euchromatic genome: A systematic review. Genome Biol., 3, RESEARCH0083.
-
(2002)
Genome Biol
, vol.3
-
-
Misra, S.1
Crosby, M.A.2
Mungall, C.J.3
Matthews, B.B.4
Campbell, K.S.5
Hradecky, P.6
Huang, Y.7
Kaminker, J.S.8
Millburn, G.H.9
Prochnik, S.E.10
-
11
-
-
34249717879
-
A high-quality catalog of the Drosophila melanogaster proteome
-
Brunner,E., Ahrens,C.H., Mohanty,S., Baetschmann,H., Loevenich,S., Potthast,F., Deutsch,E.W., Panse,C., de Lichtenberg,U., Rinner,O. et al. (2007) A high-quality catalog of the Drosophila melanogaster proteome. Nat. Biotechnol., 25, 576-583.
-
(2007)
Nat. Biotechnol
, vol.25
, pp. 576-583
-
-
Brunner, E.1
Ahrens, C.H.2
Mohanty, S.3
Baetschmann, H.4
Loevenich, S.5
Potthast, F.6
Deutsch, E.W.7
Panse, C.8
de Lichtenberg, U.9
Rinner, O.10
-
12
-
-
7444233156
-
A gene expression map for the euchromatic genome of Drosophila melanogaster
-
Stolc,V., Gauhar,Z., Mason,C., Halasz,G., van Batenburg,M.F., Rifkin,S.A., Hua,S., Herreman,T., Tongprasit,W., Barbano,P.E. et al. (2004) A gene expression map for the euchromatic genome of Drosophila melanogaster. Science, 306, 655-660.
-
(2004)
Science
, vol.306
, pp. 655-660
-
-
Stolc, V.1
Gauhar, Z.2
Mason, C.3
Halasz, G.4
van Batenburg, M.F.5
Rifkin, S.A.6
Hua, S.7
Herreman, T.8
Tongprasit, W.9
Barbano, P.E.10
-
14
-
-
33749153857
-
Biological function of unannotated transcription during the early development of Drosophila melanogaster
-
Manak,J.R., Dike,S., Sementchenko,V., Kapranov,P., Biemar,F., Long,J., Cheng,J., Bell,I., Ghosh,S., Piccolboni,A. et al. (2006) Biological function of unannotated transcription during the early development of Drosophila melanogaster. Nat. Genet., 38, 1151-1158.
-
(2006)
Nat. Genet
, vol.38
, pp. 1151-1158
-
-
Manak, J.R.1
Dike, S.2
Sementchenko, V.3
Kapranov, P.4
Biemar, F.5
Long, J.6
Cheng, J.7
Bell, I.8
Ghosh, S.9
Piccolboni, A.10
-
15
-
-
34548758619
-
A cyanobacterial non-coding RNA, Yfr1, is required for growth under multiple stress conditions
-
Nakamura,T., Naito,K., Yokota,N., Sugita,C. and Sugita,M. (2007) A cyanobacterial non-coding RNA, Yfr1, is required for growth under multiple stress conditions. Plant Cell Physiol., 48, 1309-1318.
-
(2007)
Plant Cell Physiol
, vol.48
, pp. 1309-1318
-
-
Nakamura, T.1
Naito, K.2
Yokota, N.3
Sugita, C.4
Sugita, M.5
-
16
-
-
33750492614
-
Detecting transcriptionally active regions using genomic tiling arrays
-
Halasz,G., van Batenburg,M.F., Perusse,J., Hua,S., Lu,X.J., White,K.P. and Bussemaker,H.J. (2006) Detecting transcriptionally active regions using genomic tiling arrays. Genome Biol., 7, R59.
-
(2006)
Genome Biol
, vol.7
-
-
Halasz, G.1
van Batenburg, M.F.2
Perusse, J.3
Hua, S.4
Lu, X.J.5
White, K.P.6
Bussemaker, H.J.7
-
17
-
-
33749154995
-
Tiling DNA microarrays for fly genome cartography
-
Oliver,B. (2006) Tiling DNA microarrays for fly genome cartography. Nat. Genet., 38, 1101-1102.
-
(2006)
Nat. Genet
, vol.38
, pp. 1101-1102
-
-
Oliver, B.1
-
18
-
-
3242891068
-
-
Frazer,K.A., Pachter,L., Poliakov,A., Rubin,E.M. and Dubchak,I. (2004) VISTA: Computational tools for comparative genomics. Nucleic Acids Res., 32(Web Server issue), W273-W279.
-
Frazer,K.A., Pachter,L., Poliakov,A., Rubin,E.M. and Dubchak,I. (2004) VISTA: Computational tools for comparative genomics. Nucleic Acids Res., 32(Web Server issue), W273-W279.
-
-
-
-
19
-
-
0003455528
-
-
2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Ashburner,M., Golic,K.G. and Hawley,R.S. (2005) Drosophila: A Laboratory Handbook, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(2005)
Drosophila: A Laboratory Handbook
-
-
Ashburner, M.1
Golic, K.G.2
Hawley, R.S.3
-
20
-
-
47149117454
-
Evolution of genes and genomes on the Drosophila phylogeny
-
Clark,A.G., Eisen,M.B., Smith,D.R., Bergman,C.M., Oliver,B., Markow,T.A., Kaufman,T.C., Kellis,M., Gelbart,W., Iyer,V.N. et al. (2007) Evolution of genes and genomes on the Drosophila phylogeny. Nature, 450, 203-218.
-
(2007)
Nature
, vol.450
, pp. 203-218
-
-
Clark, A.G.1
Eisen, M.B.2
Smith, D.R.3
Bergman, C.M.4
Oliver, B.5
Markow, T.A.6
Kaufman, T.C.7
Kellis, M.8
Gelbart, W.9
Iyer, V.N.10
-
21
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
Siepel,A., Bejerano,G., Pedersen,J.S., Hinrichs,A.S., Hou,M., Rosenbloom,K., Clawson,H., Spieth,J., Hillier,L.W., Richards,S. et al. (2005) Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res., 15, 1034-1050.
-
(2005)
Genome Res
, vol.15
, pp. 1034-1050
-
-
Siepel, A.1
Bejerano, G.2
Pedersen, J.S.3
Hinrichs, A.S.4
Hou, M.5
Rosenbloom, K.6
Clawson, H.7
Spieth, J.8
Hillier, L.W.9
Richards, S.10
-
22
-
-
33644750115
-
-
Griffiths-Jones,S., Grocock,R.J., van Dongen,S., Bateman,A. and Enright,A.J. (2006) miRBase: MicroRNA sequences, targets and gene nomenclature. Nucleic Acids Res., 34(Database issue), D140-D144.
-
Griffiths-Jones,S., Grocock,R.J., van Dongen,S., Bateman,A. and Enright,A.J. (2006) miRBase: MicroRNA sequences, targets and gene nomenclature. Nucleic Acids Res., 34(Database issue), D140-D144.
-
-
-
-
24
-
-
0036226603
-
BLAT - the BLAST-like alignment tool
-
Kent,W.J. (2002) BLAT - the BLAST-like alignment tool. Genome Res. 12, 656-664.
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
25
-
-
29444457713
-
Rapid evolution of noncoding RNAs: Lack of conservation does not mean lack of function
-
Pang,K.C., Frith,M.C. and Mattick,J.S. (2006) Rapid evolution of noncoding RNAs: Lack of conservation does not mean lack of function. Trends Genet., 22, 1-5.
-
(2006)
Trends Genet
, vol.22
, pp. 1-5
-
-
Pang, K.C.1
Frith, M.C.2
Mattick, J.S.3
-
26
-
-
3242891068
-
-
Frazer,K.A., Pachter,L., Poliakov,A., Rubin,E.M. and Dubchak,I. (2004) VISTA: Computational tools for comparative genomics. Nucleic Acids Res., 32(Web Server issue), W273-W279.
-
Frazer,K.A., Pachter,L., Poliakov,A., Rubin,E.M. and Dubchak,I. (2004) VISTA: Computational tools for comparative genomics. Nucleic Acids Res., 32(Web Server issue), W273-W279.
-
-
-
-
27
-
-
0034708480
-
The genome sequence of Drosophila melanogaster
-
Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F. et al. (2000) The genome sequence of Drosophila melanogaster. Science 287, 2185-2195.
-
(2000)
Science
, vol.287
, pp. 2185-2195
-
-
Adams, M.D.1
Celniker, S.E.2
Holt, R.A.3
Evans, C.A.4
Gocayne, J.D.5
Amanatides, P.G.6
Scherer, S.E.7
Li, P.W.8
Hoskins, R.A.9
Galle, R.F.10
-
28
-
-
61549133195
-
Molecular population genetics and evolution of Drosophila meiosis genes
-
Anderson,J.A., Gilliland,W.D. and Langley,C.H. (2009) Molecular population genetics and evolution of Drosophila meiosis genes. Genetics, 181, 177-185.
-
(2009)
Genetics
, vol.181
, pp. 177-185
-
-
Anderson, J.A.1
Gilliland, W.D.2
Langley, C.H.3
-
29
-
-
27144491328
-
Adaptive evolution of non-coding DNA in Drosophila
-
Andolfatto,P. (2005) Adaptive evolution of non-coding DNA in Drosophila. Nature, 437, 1149-1152.
-
(2005)
Nature
, vol.437
, pp. 1149-1152
-
-
Andolfatto, P.1
|