메뉴 건너뛰기




Volumn 2, Issue 1, 2010, Pages 467-477

The evolution of tRNA genes in Drosophila

Author keywords

Gene duplication; Genome evolution; Noncoding RNA; Synteny map; Transfer RNA; tRNA identity

Indexed keywords

TRANSFER RNA;

EID: 77958449472     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evq034     Document Type: Article
Times cited : (35)

References (34)
  • 1
    • 35948940895 scopus 로고    scopus 로고
    • Population genomics: Whole-genome analysis of polymorphism and divergence in Drosophila simulans
    • Begun DJ, et al. 2007. Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans. PLoS Biol. 5: e310.
    • (2007) PLoS Biol. , vol.5
    • Begun, D.J.1
  • 2
    • 0012301705 scopus 로고    scopus 로고
    • Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome
    • Bergman CM, et al. 2002. Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome. Genome Biol. 3: RESEARCH0086.
    • (2002) Genome Biol. , vol.3
    • Bergman, C.M.1
  • 3
    • 33847749916 scopus 로고    scopus 로고
    • Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome
    • Bergman CM, Quesneville H, Anxolabehere D, Ashburner M. 2006. Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome. Genome Biol. 7: R112.
    • (2006) Genome Biol. , vol.7
    • Bergman, C.M.1    Quesneville, H.2    Anxolabehere, D.3    Ashburner, M.4
  • 4
    • 47149117454 scopus 로고    scopus 로고
    • Evolution of genes and genomes on the Drosophila phylogeny
    • Clark AG, et al. 2007. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450:203-218.
    • (2007) Nature , vol.450 , pp. 203-218
    • Clark, A.G.1
  • 6
    • 84959795073 scopus 로고
    • Phylogenetic analysis under Dollo's law
    • Farris JS. 1977. Phylogenetic analysis under Dollo's law. Syst Zool. 26:77-88.
    • (1977) Syst. Zool. , vol.26 , pp. 77-88
    • Farris, J.S.1
  • 7
    • 1842684068 scopus 로고    scopus 로고
    • Genome sequence of the Brown Norway rat yields insights into mammalian evolution
    • Gibbs RA, et al. 2004. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 428:493-521.
    • (2004) Nature , vol.428 , pp. 493-521
    • Gibbs, R.A.1
  • 8
    • 0343500634 scopus 로고    scopus 로고
    • St. Louis: Washington University cited 2008 April 24. Available from
    • Gish W. 1996-2004. WU-BLAST [Internet]. St. Louis: Washington University [cited 2008 April 24]. Available from: http://blast.wustl.edu.
    • (1996) WU-BLAST [Internet]
    • Gish, W.1
  • 11
    • 36048950933 scopus 로고    scopus 로고
    • Gene family evolution across 12 Drosophila genomes
    • Hahn MW, Han MV, Han SG. 2007. Gene family evolution across 12 Drosophila genomes. PLoS Genet. 3: e197.
    • (2007) PLoS Genet. , vol.3
    • Hahn, M.W.1    Han, M.V.2    Han, S.G.3
  • 12
    • 0018861248 scopus 로고
    • Hybridization of tRNAs of Drosophila melanogaster to polytene chromosomes
    • Hayashi S, et al. 1980. Hybridization of tRNAs of Drosophila melanogaster to polytene chromosomes. Chromosoma. 76:65-84.
    • (1980) Chromosoma , vol.76 , pp. 65-84
    • Hayashi, S.1
  • 13
    • 23844525077 scopus 로고    scopus 로고
    • Repbase Update, a database of eukaryotic repetitive elements
    • Jurka J, et al. 2005. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res. 110:462-467.
    • (2005) Cytogenet. Genome Res. , vol.110 , pp. 462-467
    • Jurka, J.1
  • 14
    • 0036079158 scopus 로고    scopus 로고
    • The human genome browser at UCSC
    • Kent WJ, et al. 2002. The human genome browser at UCSC. Genome Res. 12:996-1006.
    • (2002) Genome Res. , vol.12 , pp. 996-1006
    • Kent, W.J.1
  • 15
    • 55449118548 scopus 로고    scopus 로고
    • ReAS: Recovery of ancestral sequences for transposable elements from the unassembled reads of a whole genome shotgun
    • Li R, et al. 2005. ReAS: recovery of ancestral sequences for transposable elements from the unassembled reads of a whole genome shotgun. PLoS Comput Biol. 1: e43.
    • (2005) PLoS Comput. Biol. , vol.1
    • Li, R.1
  • 17
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25:955-964.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 18
    • 0024121525 scopus 로고
    • Microcloning reveals a high frequency of repetitive sequences characteristic of chromosome 4 and the beta-heterochromatin of Drosophila melanogaster
    • Miklos GL, Yamamoto MT, Davies J, Pirrotta V. 1988. Microcloning reveals a high frequency of repetitive sequences characteristic of chromosome 4 and the beta-heterochromatin of Drosophila melanogaster. Proc Natl Acad Sci U S A. 85:2051-2055.
    • (1988) Proc. Natl. Acad. Sci. U. S. A. , vol.85 , pp. 2051-2055
    • Miklos, G.L.1    Yamamoto, M.T.2    Davies, J.3    Pirrotta, V.4
  • 19
    • 0030731696 scopus 로고    scopus 로고
    • Codon usage bias and tRNA abundance in Drosophila
    • Moriyama EN, Powell JR. 1997. Codon usage bias and tRNA abundance in Drosophila. J Mol Evol. 45:514-523.
    • (1997) J. Mol. Evol. , vol.45 , pp. 514-523
    • Moriyama, E.N.1    Powell, J.R.2
  • 20
    • 0027260944 scopus 로고
    • Non-universal decoding of the leucine codon CUG in several Candida species
    • Ohama T, et al. 1993. Non-universal decoding of the leucine codon CUG in several Candida species. Nucleic Acids Res. 21:4039-4045.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 4039-4045
    • Ohama, T.1
  • 21
    • 0029856377 scopus 로고    scopus 로고
    • High intrinsic rate of DNA loss in Drosophila
    • Petrov DA, Lozovskaya ER, Hartl DL. 1996. High intrinsic rate of DNA loss in Drosophila. Nature. 384:346-349.
    • (1996) Nature , vol.384 , pp. 346-349
    • Petrov, D.A.1    Lozovskaya, E.R.2    Hartl, D.L.3
  • 23
    • 0347364639 scopus 로고    scopus 로고
    • Changing identities: Trna duplication and remolding within animal mitochondrial genomes
    • Rawlings TA, Collins TM, Bieler R. 2003. Changing identities: tRNA duplication and remolding within animal mitochondrial genomes. Proc Natl Acad Sci U S A. 100:15700-15705.
    • (2003) Proc. Natl. Acad. Sci. U. S. A. , vol.100 , pp. 15700-15705
    • Rawlings, T.A.1    Collins, T.M.2    Bieler, R.3
  • 24
    • 38849159102 scopus 로고    scopus 로고
    • Superwobbling facilitates translation with reduced tRNA sets
    • Rogalski M, Karcher D, Bock R. 2008. Superwobbling facilitates translation with reduced tRNA sets. Nat Struct Mol Biol. 15:192-198.
    • (2008) Nat. Struct. Mol. Biol. , vol.15 , pp. 192-198
    • Rogalski, M.1    Karcher, D.2    Bock, R.3
  • 25
    • 0032513368 scopus 로고    scopus 로고
    • Evolution of a transfer RNA gene through a point mutation in the anticodon
    • Saks ME, Sampson JR, Abelson J. 1998. Evolution of a transfer RNA gene through a point mutation in the anticodon. Science. 279:1665-1670.
    • (1998) Science , vol.279 , pp. 1665-1670
    • Saks, M.E.1    Sampson, J.R.2    Abelson, J.3
  • 26
    • 0024827367 scopus 로고
    • The anticodon contains a major element of the identity of arginine transfer RNAs
    • Schulman LH, Pelka H. 1989. The anticodon contains a major element of the identity of arginine transfer RNAs. Science. 246:1595-1597.
    • (1989) Science , vol.246 , pp. 1595-1597
    • Schulman, L.H.1    Pelka, H.2
  • 27
    • 24944555175 scopus 로고    scopus 로고
    • Institute for Systems Biology cited 2009 June 01. Available from
    • Smit A, Hubley R, Green P. 1996-2004. RepeatMasker Open-3.0 [Internet]. Institute for Systems Biology [cited 2009 June 01]. Available from: http://www.repeatmasker.org.
    • (1996) RepeatMasker Open-3.0 [Internet]
    • Smit, A.1    Hubley, R.2    Green, P.3
  • 28
    • 1242352089 scopus 로고    scopus 로고
    • Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks
    • Tamura K, Subramanian S, Kumar S. 2004. Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks. Mol Biol Evol. 21:36-44.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 36-44
    • Tamura, K.1    Subramanian, S.2    Kumar, S.3
  • 30
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 31
    • 0025095257 scopus 로고
    • Conservatism of sites of tRNA loci among the linkage groups of several Drosophila species
    • Tonzetich J, Hayashi S, Grigliatti TA. 1990. Conservatism of sites of tRNA loci among the linkage groups of several Drosophila species. J Mol Evol. 30:182-188.
    • (1990) J. Mol. Evol. , vol.30 , pp. 182-188
    • Tonzetich, J.1    Hayashi, S.2    Grigliatti, T.A.3
  • 33
    • 33646886152 scopus 로고    scopus 로고
    • Archaeology and evolution of transfer RNA genes in the Escherichia coli genome
    • 2006
    • Withers M, Wernisch L. 2006. dos Reis M. 2006. Archaeology and evolution of transfer RNA genes in the Escherichia coli genome. RNA. 12:933-942.
    • (2006) RNA , vol.12 , pp. 933-942
    • Withers, M.1    Wernisch, L.2    Dos Reis, M.3
  • 34
    • 0019206284 scopus 로고
    • The gross anatomy of a tRNA gene cluster at region 42A of the D. melanogaster chromosome
    • Yen PH, Davidson N. 1980. The gross anatomy of a tRNA gene cluster at region 42A of the D. melanogaster chromosome. Cell. 22:137-148.
    • (1980) Cell. , vol.22 , pp. 137-148
    • Yen, P.H.1    Davidson, N.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.