Genomic signatures of divergent selection and speciation patterns in a 'natural experiment', the young parallel radiations of Nicaraguan crater lake cichlid fishes

Molecular Ecology

Volumn 21, Issue 19, 2012, Pages 4770-4786

  Kautt, Andreas F ^a,b   Elmer, Kathryn R ^a   Meyer, Axel ^a,b  

^a UNIVERSITY OF KONSTANZ   (Germany)

^b University of Konstanz   (Germany)

Author keywords

AFLP; genome scan; limnetic benthic; parallel evolution; population genomics; sympatric speciation

Indexed keywords

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ANIMAL; ARTICLE; CICHLID; CLASSIFICATION; DNA SEQUENCE; GENETIC SELECTION; GENETICS; LAKE; NICARAGUA; PHYLOGENY; SPECIES DIFFERENTIATION; SYMPATRY;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; ANIMALS; CICHLIDS; GENETIC SPECIATION; LAKES; NICARAGUA; PHYLOGENY; SELECTION, GENETIC; SEQUENCE ANALYSIS, DNA; SYMPATRY;

AMPHILOPHUS CITRINELLUS; CICHLIDAE; PISCES;

EID: 84867102111     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2012.05738.x     Document Type: Article

References (130)

1. Albert AYK, Sawaya S, Vines TH, et al,. (2007) The genetics of adaptive shape shift in stickleback: pleiotropy and effect size. Evolution, 62, 76-85.
2. Barlow GW, (1976a) The Midas Cichlid in Nicaragua. In: Investigations of the ichthyology of Nicaraguan lakes (ed., Thorson TB,), pp. 333-358. University of Nebraska Press, Lincoln.
3. Barlow GW, (1976b) The Midas Cichlid in Nicaragua. In: Investigations of the Ichthyofauna of Nicaraguan lakes (ed., Thorson TB,), pp. 333-358. University of Nebraska Press, Lincoln, Nebraska.
4. Barlow GW, Munsey JW, (1976) The red devil-Midas-arrow cichlid species complex in Nicaragua. In: Investigations of the Ichthyofauna of Nicaraguan lakes (ed., Thorson TB,), pp. 359-370. University of Nebraska Press, Lincoln, Nebraska.
5. Barlow GW, Baylis JR, Roberts D, (1976) Chemical analyses of some crater lakes in relation to adjacent Lake Nicaragua. In: Investigations of the Ichthyofauna of Nicaraguan lakes (ed., Thorson TB,), pp. 17-20. University of Nebraska Press, Lincoln, Nebraska.
6. Barluenga M, Meyer A, (2004) The Midas cichlid species complex: incipient sympatric speciation in Nicaraguan cichlid fishes? Molecular Ecology, 13, 2061-2076. (Pubitemid 38847608)
7. Barluenga M, Meyer A, (2010) Phylogeography, colonization and population history of the Midas cichlid species complex (Amphilophus spp.) in the Nicaraguan crater lakes. BMC Evolutionary Biology, 10, 326.
8. Barluenga M, Stolting KN, Salzburger W, Muschick M, Meyer A, (2006) Sympatric speciation in Nicaraguan crater lake cichlid fish. Nature, 439, 719-723. (Pubitemid 43237617)
9. Barrett RDH, Schluter D, (2008) Adaptation from standing genetic variation. Trends in Ecology & Evolution, 23, 38-44.
10. Barton NH, (2001) The role of hybridization in evolution. Molecular Ecology, 10, 551-568. (Pubitemid 32406342)
11. Barton NH, Charlesworth B, (1984) Genetic revolutions, founder effects, and speciation. Annual Review of Ecology and Systematics, 15, 133-164.
12. Beaumont MA, Balding DJ, (2004) Identifying adaptive genetic divergence among populations from genome scans. Molecular Ecology, 13, 969-980. (Pubitemid 38390600)
13. Bensch S, Akesson M, (2005) Ten years of AFLP in ecology and evolution: why so few animals? Molecular Ecology, 14, 2899-2914.
14. Bolnick DI, (2006) Multi-species outcomes in a common model of sympatric speciation. Journal of Theoretical Biology, 241, 734-744. (Pubitemid 44080786)
15. Bolnick DI, Fitzpatrick BM, (2007) Sympatric speciation: models and empirical evidence. Annual Review of Ecology, Evolution and Systematics, 38, 459-487.
16. Bonin A, Bellemain E, Eidesen PB, et al,. (2004) How to track and assess genotyping errors in population genetics studies. Molecular Ecology, 13, 3261-3273. (Pubitemid 39415663)
17. Bonin A, Taberlet P, Miaud C, Pompanon F, (2006) Explorative genome scan to detect candidate loci for adaptation along a gradient of altitude in the common frog (Rana temporaria). Molecular Biology and Evolution, 23, 773-783.
18. Borowsky R, (2008) Restoring sight in blind cavefish. Current Biology, 18, R23-R24.
19. Butlin RK, (2008) Population genomics and speciation. Genetica, 138, 409-418.
20. Butlin R, Debelle A, Kerth C, et al,. (2012) What do we need to know about speciation? Trends in Ecology & Evolution, 27, 27-39.
21. Campbell D, Bernatchez L, (2004) Generic scan using AFLP markers as a means to assess the role of directional selection in the divergence of sympatric whitefish ecotypes. Molecular Biology and Evolution, 21, 945-956. (Pubitemid 38529736)
22. Carson HL, (1975) The genetics of speciation at the diploid level. American Naturalist, 109, 83-92.
23. Carson HL, Templeton AR, (1984) Genetic revolutions in relation to speciation phenomena-the founding of new populations. Annual Review of Ecology and Systematics, 15, 97-131.
24. Cavalli-Sforza LL, Edwards AWF, (1967) Phylogenetic analysis: models and estimation procedures. Evolution, 21, 550-570.
25. Chan YF, Marks ME, Jones FC, et al,. (2010) Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer. Science, 327, 302-305.
26. Cheng CD, White BJ, Kamdem C, et al,. (2012) Ecological genomics of Anopheles gambiae along a latitudinal cline: a population-resequencing approach. Genetics, 190, 1417-1432.
27. Colbeck GJ, Turgeon J, Sirois P, Dodson JJ, (2011) Historical introgression and the role of selective vs. neutral processes in structuring nuclear genetic variation (AFLP) in a circumpolar marine fish, the capelin (Mallotus villosus). Molecular Ecology, 20, 1976-1987.
28. Colosimo PF, Hosemann KE, Balabhadra S, et al,. (2005) Widespread parallel evolution in sticklebacks by repeated fixation of ectodysplasin alleles. Science, 307, 1928-1933. (Pubitemid 40404697)
29. Coyne JA, Orr HA, (2004) Speciation. Sinauer Associates, Sunderland.
30. Deagle BE, Jones FC, Chan YF, et al,. (2012) Population genomics of parallel phenotypic evolution in stickleback across stream-lake ecological transitions. Proceedings of the Royal Society B, 279, 1277-1286.
31. Dieckmann U, Doebeli M, (1999) On the origin of species by sympatric speciation. Nature, 400, 354-357. (Pubitemid 29355104)
32. Dittmann MT, Roesti M, Indermaur A, et al,. (2012) Depth-dependent abundance of Midas Cichlid fish (Amphilophus spp.) in two Nicaraguan crater lakes. Hydrobiologia, 686, 277-285.
33. Elmer KR, Meyer A, (2011) Adaptation in the age of ecological genomics: insights from parallelism and convergence. Trends in Ecology & Evolution, 26, 298-306.
34. Elmer KR, Lehtonen TK, Meyer A, (2009) Color assortative mating contributes to sympatric divergence of neotropical cichlid fish. Evolution, 63, 2750-2757.
35. Elmer KR, Kusche H, Lehtonen TK, Meyer A, (2010) Local variation and parallel evolution: morphological and genetic diversity across a species complex of neotropical crater lake cichlid fishes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 365, 1763-1782.
36. Elmer KR, Lehtonen TK, Fan S, Meyer A, (2012) Crater lake colonization by Neotropical cichlid fishes. Evolution, doi: 10.1111/j.1558-5646.2012.01755.x.
37. Feder JL, Egan SP, Nosil P, (2012) The genomics of speciation-with-gene- flow. Trends in Genetics, 28, 342-350.
38. Fischer MC, Foll M, Excoffier L, Heckel G, (2011) Enhanced AFLP genome scans detect local adaptation in high-altitude populations of a small rodent (Microtus arvalis). Molecular Ecology, 20, 1450-1462.
39. Foll M, Gaggiotti O, (2008) A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective. Genetics, 180, 977-993.
40. Freedman AH, Thomassen HA, Buermann W, Smith TB, (2010) Genomic signals of diversification along ecological gradients in a tropical lizard. Molecular Ecology, 19, 3773-3788.
41. Gavrilets S, (2003) Perspective: models of speciation: what have we learned in 40 years? Evolution, 57, 2197-2215. (Pubitemid 37388014)
42. Gavrilets S, Losos JB, (2009) Adaptive radiation: contrasting theory with data. Science, 323, 732-737.
43. Gavrilets S, Vose A, (2005) Dynamic patterns of adaptive radiation. Proceedings of the National Academy of Sciences USA, 102, 18040-18045. (Pubitemid 41798498)
44. Gavrilets S, Vose A, (2007) Case studies and mathematical models of ecological speciation. 2. Palms on an oceanic island. Molecular Ecology, 16, 2910-2921. (Pubitemid 47035460)
45. Gavrilets S, Vose A, Barluenga M, Salzburger W, Meyer A, (2007) Case studies and mathematical models of ecological speciation. 1. Cichlids in a crater lake. Molecular Ecology, 16, 2893-2909. (Pubitemid 47035461)
46. Geiger MF, McCrary JK, Stauffer JR, (2010) Description of two new species of the Midas cichlid complex (Teleostei: Cichlidae) from Lake Apoyo, Nicaragua. Proceedings of the Biological Society of Washington, 123, 159-173.
47. Günther ACLG, (1864) On some new species of Central-American fishes. Proceedings of the Zoological Society of London, 1, 23-27.
48. Harmon LJ, Schulte JA, Larson A, Losos JB, (2003) Tempo and mode of evolutionary radiation in iguanian lizards. Science, 301, 961-964. (Pubitemid 36994807)
49. Hoffman JI, Peck LS, Linse K, Clarke A, (2011) Strong population genetic structure in a broadcast-spawning Antarctic Marine Invertebrate. Journal of Heredity, 102, 55-66.
50. Hoffmann AA, Rieseberg LH, (2008) Revisiting the impact of inversions in evolution: from population genetic markers to drivers of adaptive shifts and speciation? Annual Review of Ecology, Evolution and Systematics, 39, 21-42.
51. Hohenlohe PA, Bassham S, Etter PD, et al,. (2010a) Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags. PLoS Genetics, 6, e1000862.
52. Hohenlohe PA, Phillips PC, Cresko WA, (2010b) Using population genomics to detect selection in natural populations: key concepts and methodological considerations. International Journal of Plant Sciences, 171, 1059-1071.
53. Kirkpatrick M, Barton N, (2006) Chromosome inversions, local adaptation and speciation. Genetics, 173, 419-434. (Pubitemid 43800212)
54. Klingenberg CP, Barluenga M, Meyer A, (2003) Body shape variation in cichlid fishes of the Amphilophus citrinellus species complex. Biological Journal of the Linnean Society, 80, 397-408. (Pubitemid 37435945)
55. Kocher TD, Lee WJ, Sobolewska H, Penman D, McAndrew B, (1998) A genetic linkage map of a cichlid fish, the tilapia (Oreochromis niloticus). Genetics, 148, 1225-1232. (Pubitemid 28169031)
56. Kolbe JJ, Leal M, Schoener TW, Spiller DA, Losos JB, (2012) Founder effects persist despite adaptive differentiation: a field experiment with lizards. Science, 335, 1086-1089.
57. Kondrashov AS, Kondrashov FA, (1999) Interactions among quantitative traits in the course of sympatric speciation. Nature, 400, 351-354. (Pubitemid 29344197)
58. Kutterolf S, Freundt A, Perez W, Wehrmann H, Schmincke HU, (2007) Late Pleistocene to Holocene temporal succession and magnitudes of highly-explosive volcanic eruptions in west-central Nicaragua. Journal of Volcanology and Geothermal Research, 163, 55-82. (Pubitemid 46863189)
59. Lang M, Miyake T, Braasch I, et al,. (2006) A BAC library of the East African haplochromin cichlid fish Astatotilapia burtoni. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 306B, 35-44. (Pubitemid 43324573)
60. Lewontin RC, Krakauer J, (1973) Distribution of gene frequency as a test of theory of selective neutrality of polymorphisms. Genetics, 74, 175-195.
61. Losos JB, (2009) Lizards in an evolutionary tree: the ecology of adaptive radiation in anoles. University of California Press, Berkeley.
62. Losos JB, (2010) Adaptive radiation, ecological opportunity, and evolutionary determinism. American Naturalist, 175, 623-639.
63. Losos JB, (2011) Convergence, adaptation, and constraint. Evolution, 65, 1827-1840.
64. Losos JB, Jackman TR, Larson A, de Queiroz K, Rodriguez-Schettino L, (1998) Contingency and determinism in replicated adaptive radiations of island lizards. Science, 279, 2115-2118. (Pubitemid 28196357)
65. Majumdar KC, McAndrew BJ, (1986) Relative DNA content of somatic nuclei and chromosomal studies in 3 Genera, Tilapia, Sarotherodon, and Oreochromis of the Tribe Tilapiini (Pisces, Cichlidae). Genetica, 68, 175-188.
66. Manel S, Conord C, Despres L, (2009) Genome scan to assess the respective role of host-plant and environmental constraints on the adaptation of a widespread insect. BMC Evolutionary Biology, 9, 288.
67. Manousaki T, Hull PM, Kusche H, Machado-Schiaffino G, Franchini P, Harrod C, Elmer KR, Meyer A, (2012) Parsing parallel evolution: trophic ecology, morphometrics and comparative transcriptomics in the repeated evolution of hypertrophied-lips in the Nicaraguan Midas cichlid fish adaptive radiations. Molecular Ecology, in press.
68. Mayr E, (1954) Change of genetic environment and evolution. In: Evolution as a process (eds., Huxley J, Hardy AC, Ford EB,), pp. 157-180. Allen & Unwin, London.
69. McKinnon JS, Rundle HD, (2002) Speciation in nature: the threespine stickleback model systems. Trends in Ecology & Evolution, 17, 480-488. (Pubitemid 35249998)
70. McNiven VT, Levasseur-Viens H, Kanippayoor RL, Laturney M, Moehring AJ, (2011) The genetic basis of evolution, adaptation and speciation. Molecular Ecology, 20, 5119-5122.
71. Meudt HM, Clarke AC, (2007) Almost forgotten or latest practice? AFLP applications, analyses and advances Trends in Plant Science, 12, 106-117. (Pubitemid 46389498)
72. Meyer A, (1990a) Ecological and evolutionary consequences of the trophic polymorphism in Cichlasoma citrinellum (Pisces, Cichlidae). Biological Journal of the Linnean Society, 39, 279-299.
73. Meyer A, (1990b) Morphometrics and allometry in the trophically polymorphic cichlid fish, Cichlasoma citrinellum-alternative adaptations and ontogenic changes in shape. Journal of Zoology, 221, 237-260.
74. Meyer A, (1993) Phylogenetic-relationships and evolutionary processes in East-African cichlid fishes. Trends in Ecology & Evolution, 8, 279-284. (Pubitemid 24410252)
75. Michel AP, Sim S, Powell THQ, et al,. (2010) Widespread genomic divergence during sympatric speciation. Proceedings of the National Academy of Sciences USA, 107, 9724-9729.
76. Mueller UG, Wolfenbarger LL, (1999) AFLP genotyping and fingerprinting. Trends in Ecology & Evolution, 14, 389-394. (Pubitemid 29428460)
77. Nadeau NJ, Jiggins CD, (2010) A golden age for evolutionary genetics? Genomic studies of adaptation in natural populations. Trends in Genetics, 26, 484-492.
78. Nadeau NJ, Whibley A, Jones RT, et al,. (2012) Genomic islands of divergence in hybridizing Heliconius butterflies identified by large-scale targeted sequencing. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 367, 343-353.
79. Nei M, (1973) Analysis of gene diversity in subdivided populations. Proceedings of the National Academy of Sciences USA, 70, 3321-3323.
80. Niemiller ML, Nosil P, Fitzpatrick BM, (2010) Corrigendum: recent divergence-with-gene-flow in Tennessee cave salamanders (Plethodontidae; Gyrinophilus) inferred from gene genealogies. Molecular Ecology, 19, 1513-1514.
81. Nosil P, (2008) Speciation with gene flow could be common. Molecular Ecology, 17, 2103-2106. (Pubitemid 351562798)
82. Nosil P, (2012) Ecological Speciation. Oxford University Press, New York, New York.
83. Nosil P, Feder JL, (2012) Genomic divergence during speciation: causes and consequences. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 367, 332-342.
84. Nosil P, Egan SP, Funk DJ, (2008) Heterogeneous genomic differentiation between walking-stick ecotypes: "Isolation by adaptation" and multiple roles for divergent selection. Evolution, 62, 316-336. (Pubitemid 351294562)
85. Nosil P, Funk DJ, Ortiz-Barrientos D, (2009) Divergent selection and heterogeneous genomic divergence. Molecular Ecology, 18, 375-402.
86. Paris M, Boyer S, Bonin A, et al,. (2010) Genome scan in the mosquito Aedes rusticus: population structure and detection of positive selection after insecticide treatment. Molecular Ecology, 19, 325-337.
87. Parisod C, Joost S, (2010) Divergent selection in trailing- versus leading-edge populations of Biscutella laevigata. Annals of Botany, 105, 655-660.
88. Paun O, Bateman RM, Fay MF, et al,. (2010) Stable epigenetic effects impact adaptation in allopolyploid orchids (Dactylorhiza: Orchidaceae). Molecular Biology and Evolution, 27, 2465-2473.
89. Perez-Figueroa A, Garcia-Pereira MJ, Saura M, Rolan-Alvarez E, Caballero A, (2010) Comparing three different methods to detect selective loci using dominant markers. Journal of Evolutionary Biology, 23, 2267-2276.
90. Pinho C, Hey J, (2010) Divergence with gene flow: models and data. Annual Review of Ecology, Evolution, and Systematics, 41, 215-230.
91. Przeworski M, Coop G, Wall JD, (2005) The signature of positive selection on standing genetic variation. Evolution, 59, 2312-2323. (Pubitemid 41752645)
92. R Development Core Team (2010) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria.
93. Renaut S, Maillet N, Normandeau E, et al,. (2012) Genome-wide patterns of divergence during speciation: the lake whitefish case study. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 367, 354-363.
94. Robinson BW, Wilson DS, (1994) Character release and displacement in fishes-a neglected literature. American Naturalist, 144, 596-627.
95. Roesti M, Hendry AP, Salzburger W, Berner D, (2012) Genome divergence during evolutionary diversification as revealed in replicate lake-stream stickleback population pairs. Molecular Ecology, 21, 2852-2862.
96. Rogers SM, Bernatchez L, (2005) Integrating QTL mapping and genome scans towards the characterization of candidate loci under parallel selection in the lake whitefish (Coregonus clupeaformis). Molecular Ecology, 14, 351-361. (Pubitemid 40210668)
97. Rogers SM, Bernatchez L, (2007) The genetic architecture of ecological speciation and the association with signatures of selection in natural lake whitefish (Coregonus sp Salmonidae) species pairs. Molecular Biology and Evolution, 24, 1423-1438. (Pubitemid 47343948)
98. Rundle HD, Nosil P, (2005) Ecological speciation. Ecology Letters, 8, 336-352. (Pubitemid 40393919)
99. Saitou N, Nei M, (1987) The neighbor-joining method-a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4, 406-425.
100. Salzburger W, Meyer A, (2004) The species flocks of East African cichlid fishes: recent advances in molecular phylogenetics and population genetics. Naturwissenschaften, 91, 277-290. (Pubitemid 38916482)
101. Schluter D, (1996) Ecological speciation in postglacial fishes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 351, 807-814. (Pubitemid 26309546)
102. Schluter D, (2000) The Ecology of Adaptive Radiation, 1. publ. edn. Oxford University Press, Oxford.
103. Schlüter PM, Harris SA, (2006) Analysis of multilocus fingerprinting data sets containing missing data. Molecular Ecology Notes, 6, 569-572. (Pubitemid 43780795)
104. Schluter D, McPhail JD, (1993) Character displacement and replicate adaptive radiation. Trends in Ecology & Evolution, 8, 197-200. (Pubitemid 24407251)
105. Smadja CM, Butlin RK, (2011) A framework for comparing processes of speciation in the presence of gene flow. Molecular Ecology, 20, 5123-5140.
106. Stapley J, Reger J, Feulner PG, et al,. (2010) Adaptation genomics: the next generation. Trends in Ecology & Evolution, 25, 705-712.
107. Stauffer JJR, McKaye KR, (2002) Descriptions of three new species of cichlid fishes (Teleostei: Cichlidae) from Lake Xiloá, Nicaragua. Cuadernos de Investigaciõn de la Universidad Centroamericana, 12, 1-18.
108. Stauffer JJR, McCrary JK, Black KE, (2008) Three new species of cichlid fishes (Teleostei: Cichlidae) from Lake Apoyo, Nicaragua. Proceedings of the Biological Society of Washington, 121, 117-129. (Pubitemid 351523610)
109. Steiner CC, Rompler H, Boettger LM, Schoneberg T, Hoekstra HE, (2009) The genetic basis of phenotypic convergence in Beach Mice: similar pigment patterns but different genes. Molecular Biology and Evolution, 26, 35-45.
110. Stiassny MLJ, Meyer A, (1999) Cichlids of the Rift lakes. Scientific American, 280, 64-69.
111. Stinchcombe JR, Hoekstra HE, (2008) Combining population genomics and quantitative genetics: finding the genes underlying ecologically important traits. Heredity, 100, 158-170. (Pubitemid 351156869)
112. Storz JF, (2005) Using genome scans of DNA polymorphism to infer adaptive population divergence. Molecular Ecology, 14, 671-688. (Pubitemid 40346460)
113. Strasburg JL, Rieseberg LH, (2010) How robust are "Isolation with Migration" analyses to violations of the IM model? A simulation study. Molecular Biology and Evolution, 27, 297-310.
114. Strasburg JL, Rieseberg LH, (2011) Interpreting the estimated timing of migration events between hybridizing species. Molecular Ecology, 20, 2353-2366.
115. Streelman JT, Danley PD, (2003) The stages of vertebrate evolutionary radiation. Trends in Ecology & Evolution, 18, 126-131. (Pubitemid 36391419)
116. Takezaki N, Nei M, (1996) Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA. Genetics, 144, 389-399. (Pubitemid 26291946)
117. Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution, 24, 1596-1599. (Pubitemid 47236692)
118. Templeton AR, (1980) The theory of speciation via the founder principle. Genetics, 94, 1011-1038. (Pubitemid 10011939)
119. Vekemans X, Beauwens T, Lemaire M, Roldan-Ruiz I, (2002) Data from amplified fragment length polymorphism (AFLP) markers show indication of size homoplasy and of a relationship between degree of homoplasy and fragment size. Molecular Ecology Notes, 11, 139-151. (Pubitemid 34108478)
120. Via S, (2001) Sympatric speciation in animals: the ugly duckling grows up. Trends in Ecology & Evolution, 16, 381-390. (Pubitemid 32525779)
121. Via S, (2009) Natural selection in action during speciation. Proceedings of the National Academy of Sciences, 106, 9939-9946.
122. Via S, West J, (2008) The genetic mosaic suggests a new role for hitchhiking in ecological speciation. Molecular Ecology, 17, 4334-4345.
123. Vivas R, McKaye KR, (2001) Habitat selection, feeding ecology, and fry survivorship in the Amphilophus citrinellus species complex in Lake Xiloá, Nicaragua. Journal of Aquariculture and Aquatic Sciences, IX, 32-48.
124. Voight BF, Kudaravalli S, Wen XQ, Pritchard JK, (2006) A map of recent positive selection in the human genome. PLoS Biology, 4, e72.
125. Vos P, Hogers R, Bleeker M, et al,. (1995) AFLP-a new technique for DNA-fingerprinting. Nucleic Acids Research, 23, 4407-4414.
126. Wake DB, Wake MH, Specht CD, (2011) Homoplasy: from detecting pattern to determining process and mechanism of evolution. Science, 331, 1032-1035.
127. Whitlock R, Hipperson H, Mannarelli M, Butlin RK, Burke T, (2008) An objective, rapid and reproducible method for scoring AFLP peak-height data that minimizes genotyping error. Molecular Ecology Resources, 8, 725-735. (Pubitemid 351989527)
128. Wright S, (1965) The interpretation of population-structure by F-statistics with special regard to systems of mating. Evolution, 19, 395-420.
129. Wu CI, (2001) The genic view of the process of speciation. Journal of Evolutionary Biology, 14, 851-865.
130. Zhivotovsky LA, (1999) Estimating population structure in diploids with multilocus dominant DNA markers. Molecular Ecology, 8, 907-913. (Pubitemid 29337748)