Estimating population structure in diploids with multilocus dominant DNA markers

Molecular Ecology

Volumn 8, Issue 6, 1999, Pages 907-913

  Zhivotovsky, Lev A ^a  

^a VAVILOV INSTITUTE OF GENERAL GENETICS   (Russian Federation)

Author keywords

Bayesian; Bias; Dominant; Marker; RAPD; Recessive

Indexed keywords

ALLELE; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; COMPUTER ANALYSIS; POPULATION GENETICS;

ALLELES; BAYES THEOREM; COMPUTER SIMULATION; DIPLOIDY; DNA, PLANT; GENE FREQUENCY; GENES, DOMINANT; GENES, RECESSIVE; GENETIC MARKERS; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; TREES; VARIATION (GENETICS);

CONIFEROPHYTA;

EID: 0033150530     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.1999.00620.x     Document Type: Article

References (24)

1. Bruford MW, Hanotte O, Brookfield JFY, Burke T (1998) Multilocus and single-locus DNA fingerprinting In: Molecular Genetic Analysis of Populations, (ed. Hoelzer AR), pp. 287-336. Oxford University Press, Oxford, UK.
2. Chakraborty R, Leimar O (1987) Genetic variation within a subdivided population. In: Population Genetics and Fishery Management (eds Ryman N, Utter F), pp. 89-102. University of Washington Press, Seattle, WA, USA.
3. Clark AG, Lanigan CMS (1993) Prospects for estimating nucleotide divergence with RAPDs. Molecular Biology and Evolution, 10, 1096-1111.
4. Evett IW, Weir BS (1998) Interpreting Data Evidence: Statistical Genetics for Forensic Scientists. Sinauer Associates, Inc., MA, USA.
5. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitichondrial DNA restriction sites. Genetics, 131, 479-491.
6. Gelman A, Carlinc JB, Stern HS, Rubin DB (1995) Bayesian Data Analysis. Chapman and Hall, USA.
7. Haig SM (1998) Molecular contributions to conservation. Ecology, 79, 413-425.
8. Hoelzel AR, Green A (1998) PCR protocols and population analysis by direct DNA sequencing and PCR-based DNA fingerpriting. In: Molecular Genetic Analysis of Populations (ed. Hoelzer AR), pp. 201-235. Oxford University Press, Oxford, UK.
9. Isabel N, Beaulieu J, Bousquet J (1995) Complete congruence between gene diversity estimates derived from genotypic data at enzyme and random amplified polymorphic DNA loci in black spruce. Proceedings of the National Academy of Science of the USA, 92, 6369-6373.
10. Kuang H, Richardson TE, Carson SD, Bongarten BC (1998) An allele responsible for seedling death in Pinus radiata D. Don. Theoretical and Applied Genetics, 96, 640-644.
11. Lynch M, Milligan B (1994) Analysis of population genetic structure with RAPD markers. Molecular Ecology, 3, 91-99.
12. Morris RW, Spieth PT (1978) Sampling strategies for using female gametophytes to estimate heterozygosities in conifers. Theoretical and Applied Genetics, 51, 217-222.
13. Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, NY, USA.
14. Peakall R, Smouse PE, Huff DR (1995) Evolutionary implication of allozyme and RAPD variation in diploid populations of diocious buffalograss Buchloë dactyloides. Molecular Ecology, 4, 135-147.
15. Schlotterer Ch (1998) Microsatellites. In: Molecular Genetic Analysis of Populations (ed. Hoezler AR), pp. 237-261. Oxford University Press, Oxford, UK.
16. Silbiger RN, Christ SA, Leonard AC et al. (1998) Preliminary studies on the population genetics of the central stoneroller (Campostoma anomalum) from the Great Miami River Basin, Ohio. Environmental Monitoring and Assessment, 51, 481-495.
17. Snedecor GW, Cochran WG (1967) Statistical Methods. 6th edn. Iowa State University, Ames, Iowa, USA.
18. Stewart CN, Excoffier L (1996) Assessing population genetic structure with RAPD data: Application to Vaccinium macrocarpon (American Cranberry). Journal of Evolutionary Biology, 9, 153-171.
19. Szmidt AE, Wang X-R, LU M-Z (1996) Empirical assessment of allozyme and RAPD variation in Pinus sylvestris (L.) using haploid tissue analysis. Heredity, 76, 412-420.
20. Vos P, Hogers R, Bleeker M et al. (1995) A new technique for DNA fingerprinting. Nucleic Acids Research, 23, 4407-4414.
21. Wang R-X (1997) Genetic variability in the canker pathogen fungus, Gremmeniella abietina. Contribution of sexual compared with asexual reproduction. Mycological Research, 101, 1195-1201.
22. Weir BS (1996) Genetic Data Analysis II. Sinauer Associates, Inc., MA, USA.
23. Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research, 18, 6531-6535.
24. Wolfram S (1993) Mathematica. A System for Doing Mathematics by Computer 2nd edn. Addison-Wesley Reading, MA, USA.