-
1
-
-
8844227502
-
Population history and natural selection shape patterns of genetic variation in 132 genes
-
Akey, J. M., M. A. Eberle, M. J. Rieder, C. S. Carlson, M. D. Shriver, D. A. Nickerson, and L. Kruglyak. 2004. Population history and natural selection shape patterns of genetic variation in 132 genes. PLoS Biol. 2:e286.
-
(2004)
PLoS Biol.
, vol.2
-
-
Akey, J.M.1
Eberle, M.A.2
Rieder, M.J.3
Carlson, C.S.4
Shriver, M.D.5
Nickerson, D.A.6
Kruglyak, L.7
-
2
-
-
0033828706
-
A genome-wide departure from the standard neutral model in natural populations of Drosophila
-
Andolfatto, P., and M. Przeworski. 2000. A genome-wide departure from the standard neutral model in natural populations of Drosophila. Genetics 156:257-268.
-
(2000)
Genetics
, vol.156
, pp. 257-268
-
-
Andolfatto, P.1
Przeworski, M.2
-
4
-
-
0031673084
-
The effect of hitch-hiking on neutral genealogies
-
Barton, N. H. 1998. The effect of hitch-hiking on neutral genealogies. Genet. Res. 72:123-133.
-
(1998)
Genet. Res.
, vol.72
, pp. 123-133
-
-
Barton, N.H.1
-
5
-
-
1642269679
-
Identifying adaptive genetic divergence among populations from genome scans
-
Beaumont, M. A., and D. J. Balding. 2004. Identifying adaptive genetic divergence among populations from genome scans. Mol. Ecol. 13:969-980.
-
(2004)
Mol. Ecol.
, vol.13
, pp. 969-980
-
-
Beaumont, M.A.1
Balding, D.J.2
-
6
-
-
2442677652
-
Genetic signatures of strong recent positive selection at the lactase gene
-
Bersaglieri, T., P. C. Sabeti, N. Patterson, T. Vanderploeg, S. F. Schaffner, J. A. Drake, M. Rhodes, D. E. Reich, and J. N. Hirschhorn. 2004. Genetic signatures of strong recent positive selection at the lactase gene. Am. J. Hum. Genet. 74:1111-1120.
-
(2004)
Am. J. Hum. Genet.
, vol.74
, pp. 1111-1120
-
-
Bersaglieri, T.1
Sabeti, P.C.2
Patterson, N.3
Vanderploeg, T.4
Schaffner, S.F.5
Drake, J.A.6
Rhodes, M.7
Reich, D.E.8
Hirschhorn, J.N.9
-
7
-
-
0038463589
-
Selection in a subdivided population with local extinction and recolonization
-
Cherry, J. L. 2003. Selection in a subdivided population with local extinction and recolonization. Genetics 164:789-795.
-
(2003)
Genetics
, vol.164
, pp. 789-795
-
-
Cherry, J.L.1
-
8
-
-
20144371089
-
Widespread parallel evolution in sticklebacks by repeated fixation of Ectodysplasin alleles
-
Colosimo, P. F., K. E. Hosemann, S. Balabhadra, G. Villarreal Jr., M. Dickson, J. Grimwood, J. Schmutz, R. M. Myers, D. Schluter, and D. M. Kingsley. 2005. Widespread parallel evolution in sticklebacks by repeated fixation of Ectodysplasin alleles. Science 307:1928-1933.
-
(2005)
Science
, vol.307
, pp. 1928-1933
-
-
Colosimo, P.F.1
Hosemann, K.E.2
Balabhadra, S.3
Villarreal Jr., G.4
Dickson, M.5
Grimwood, J.6
Schmutz, J.7
Myers, R.M.8
Schluter, D.9
Kingsley, D.M.10
-
9
-
-
4644246155
-
Ancestral inference on gene trees under selection
-
Coop, G., and R. C. Griffiths. 2004. Ancestral inference on gene trees under selection. Theor. Popul. Biol. 66:219-232.
-
(2004)
Theor. Popul. Biol.
, vol.66
, pp. 219-232
-
-
Coop, G.1
Griffiths, R.C.2
-
11
-
-
0033911640
-
Hitchhiking under positive Darwinian selection
-
Fay, J. C., and C. I. Wu. 2000. Hitchhiking under positive Darwinian selection. Genetics 155:1405-1413.
-
(2000)
Genetics
, vol.155
, pp. 1405-1413
-
-
Fay, J.C.1
Wu, C.I.2
-
12
-
-
0034835229
-
Gene conversion and different population histories may explain the contrast between polymorphism and linkage disequilibrium levels
-
Frisse, L., R. R. Hudson, A. Bartoszewicz, J. D. Wall, J. Donfack, and A. Di Rienzo. 2001. Gene conversion and different population histories may explain the contrast between polymorphism and linkage disequilibrium levels. Am. J. Hum. Genet. 69:831-843.
-
(2001)
Am. J. Hum. Genet.
, vol.69
, pp. 831-843
-
-
Frisse, L.1
Hudson, R.R.2
Bartoszewicz, A.3
Wall, J.D.4
Donfack, J.5
Di Rienzo, A.6
-
13
-
-
0347065347
-
Demography and natural selection have shaped genetic variation in Drosophila melanogaster: A multi-locus approach
-
Glinka, S., L. Ometto, S. Mousset, W. Stephan, and D. De Lorenzo. 2003. Demography and natural selection have shaped genetic variation in Drosophila melanogaster: a multi-locus approach. Genetics 165:1269-1278.
-
(2003)
Genetics
, vol.165
, pp. 1269-1278
-
-
Glinka, S.1
Ometto, L.2
Mousset, S.3
Stephan, W.4
De Lorenzo, D.5
-
14
-
-
0345274562
-
The frequency spectrum of a mutation, and its age, in a general diffusion model
-
Griffiths, R. C. 2003. The frequency spectrum of a mutation, and its age, in a general diffusion model. Theor. Popul. Biol. 64:241-251.
-
(2003)
Theor. Popul. Biol.
, vol.64
, pp. 241-251
-
-
Griffiths, R.C.1
-
15
-
-
0033911892
-
Detection of the signature of natural selection in humans: Evidence from the Duffy blood group locus
-
Hamblin, M. T., and A. Di Rienzo. 2000. Detection of the signature of natural selection in humans: evidence from the Duffy blood group locus. Am. J. Hum. Genet. 66:1669-1679.
-
(2000)
Am. J. Hum. Genet.
, vol.66
, pp. 1669-1679
-
-
Hamblin, M.T.1
Di Rienzo, A.2
-
16
-
-
0036157464
-
Complex signatures of natural selection at the Duffy blood group locus
-
Hamblin, M. T., E. E. Thompson, and A. Di Rienzo. 2002. Complex signatures of natural selection at the Duffy blood group locus. Am. J. Hum. Genet. 70:369-383.
-
(2002)
Am. J. Hum. Genet.
, vol.70
, pp. 369-383
-
-
Hamblin, M.T.1
Thompson, E.E.2
Di Rienzo, A.3
-
17
-
-
0036790812
-
Hitchhiking mapping: A population-based fine-mapping strategy for adaptive mutations in Drosophila melanogaster
-
USA
-
Harr, B., M. Kauer, and C. Schlotterer. 2002. Hitchhiking mapping: a population-based fine-mapping strategy for adaptive mutations in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 99:12949-12954.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 12949-12954
-
-
Harr, B.1
Kauer, M.2
Schlotterer, C.3
-
18
-
-
18844439645
-
Soft sweeps: Molecular population genetics of adaptation from standing genetic variation
-
Hermisson, J., and P. S. Pennings. 2005. Soft sweeps: molecular population genetics of adaptation from standing genetic variation. Genetics 169:2335-2352.
-
(2005)
Genetics
, vol.169
, pp. 2335-2352
-
-
Hermisson, J.1
Pennings, P.S.2
-
19
-
-
0023612034
-
Estimating the recombination parameter of a finite population model without selection
-
Hudson, R. R. 1987. Estimating the recombination parameter of a finite population model without selection. Genet. Res. 50:245-250.
-
(1987)
Genet. Res.
, vol.50
, pp. 245-250
-
-
Hudson, R.R.1
-
20
-
-
0001935493
-
Gene genealogies and the coalescent process
-
D. Futuyma and J. Antonovics, eds. Oxford Univ. Press, Oxford, U.K.
-
_. 1990. Gene genealogies and the coalescent process. Pp. 1-44 in D. Futuyma and J. Antonovics, eds. Oxford Surveys in Evolutionary Biology. Oxford Univ. Press, Oxford, U.K.
-
(1990)
Oxford Surveys in Evolutionary Biology
, pp. 1-44
-
-
-
21
-
-
0035692320
-
Two-locus sampling distributions and their application
-
_. 2001. Two-locus sampling distributions and their application. Genetics 159:1805-1817.
-
(2001)
Genetics
, vol.159
, pp. 1805-1817
-
-
-
22
-
-
0023760376
-
The coalescent process in models with selection and recombination
-
Hudson, R. R., and N. L. Kaplan. 1988. The coalescent process in models with selection and recombination. Genetics 120:831-840.
-
(1988)
Genetics
, vol.120
, pp. 831-840
-
-
Hudson, R.R.1
Kaplan, N.L.2
-
23
-
-
3242714766
-
Pattern of polymorphism after strong artificial selection in a domestication event
-
USA
-
Innan, H., and Y. Kim. 2004. Pattern of polymorphism after strong artificial selection in a domestication event. Proc. Natl. Acad. Sci. USA 101:10667-10672.
-
(2004)
Proc. Natl. Acad. Sci.
, vol.101
, pp. 10667-10672
-
-
Innan, H.1
Kim, Y.2
-
24
-
-
0024372736
-
The "hitch-hiking effect" revisited
-
Kaplan, N. L., R. R. Hudson, and C. H. Langley. 1989. The "hitch-hiking effect" revisited. Genetics 123:887-899.
-
(1989)
Genetics
, vol.123
, pp. 887-899
-
-
Kaplan, N.L.1
Hudson, R.R.2
Langley, C.H.3
-
26
-
-
0346991744
-
A microsatellite variability screen for positive selection associated with the "out of Africa" habitat expansion of Drosophila melanogaster
-
Kauer, M. O., D. Dieringer, and C. Schlotterer. 2003. A microsatellite variability screen for positive selection associated with the "out of Africa" habitat expansion of Drosophila melanogaster. Genetics 165:1137-1148.
-
(2003)
Genetics
, vol.165
, pp. 1137-1148
-
-
Kauer, M.O.1
Dieringer, D.2
Schlotterer, C.3
-
27
-
-
0038586483
-
A genome scan to detect candidate regions influenced by local natural selection in human populations
-
Kayser, M., S. Brauer, and M. Stoneking. 2003. A genome scan to detect candidate regions influenced by local natural selection in human populations. Mol. Biol. Evol. 20:893-900.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 893-900
-
-
Kayser, M.1
Brauer, S.2
Stoneking, M.3
-
28
-
-
3843073210
-
Linkage disequilibrium as a signature of selective sweeps
-
Kim, Y., and R. Nielsen. 2004. Linkage disequilibrium as a signature of selective sweeps. Genetics 167:1513-1524.
-
(2004)
Genetics
, vol.167
, pp. 1513-1524
-
-
Kim, Y.1
Nielsen, R.2
-
29
-
-
0036189827
-
Detecting a local signature of genetic hitchhiking along a recombining chromosome
-
Kim, Y., and W. Stephan. 2002. Detecting a local signature of genetic hitchhiking along a recombining chromosome. Genetics 160:765-777.
-
(2002)
Genetics
, vol.160
, pp. 765-777
-
-
Kim, Y.1
Stephan, W.2
-
30
-
-
0038247875
-
Molecular population genetics of inducible antibacterial peptide genes in Drosophila melanogaster
-
Lazzaro, B. P., and A. G. Clark. 2003. Molecular population genetics of inducible antibacterial peptide genes in Drosophila melanogaster. Mol. Biol. Evol. 20:914-923.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 914-923
-
-
Lazzaro, B.P.1
Clark, A.G.2
-
32
-
-
0026053092
-
Low nucleotide diversity in man
-
Li, W. H., and L. A. Sadler. 1991. Low nucleotide diversity in man. Genetics 129:513-523.
-
(1991)
Genetics
, vol.129
, pp. 513-523
-
-
Li, W.H.1
Sadler, L.A.2
-
33
-
-
0016220238
-
The hitch-hiking effect of a favourable gene
-
Maynard Smith, J. M., and J. Haigh. 1974. The hitch-hiking effect of a favourable gene. Genet. Res. 23:23-35.
-
(1974)
Genet. Res.
, vol.23
, pp. 23-35
-
-
Maynard Smith, J.M.1
Haigh, J.2
-
34
-
-
0030034357
-
Intraspecific nuclear DNA variation in Drosophila
-
Moriyama, E. N., and J. R. Powell. 1996. Intraspecific nuclear DNA variation in Drosophila. Mol. Biol. Evol. 13:261-277.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 261-277
-
-
Moriyama, E.N.1
Powell, J.R.2
-
35
-
-
10744222802
-
A selective sweep driven by pyrimethamine treatment in Southeast Asian malaria parasites
-
Nair, S., J. T. Williams, A. Brockman, L. Paiphun, M. Mayxay, P. N. Newton, J. P. Guthmann, F. M. Smithuis, T. T. Hien, N. J. White, F. Nosten, and T. J. Anderson. 2003. A selective sweep driven by pyrimethamine treatment in Southeast Asian malaria parasites. Mol. Biol. Evol. 20:1526-1536.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 1526-1536
-
-
Nair, S.1
Williams, J.T.2
Brockman, A.3
Paiphun, L.4
Mayxay, M.5
Newton, P.N.6
Guthmann, J.P.7
Smithuis, F.M.8
Hien, T.T.9
White, N.J.10
Nosten, F.11
Anderson, T.J.12
-
36
-
-
0034809334
-
Statistical tests of selective neutrality in the age of genomics
-
Nielsen, R. 2001. Statistical tests of selective neutrality in the age of genomics. Heredity 86:641-647.
-
(2001)
Heredity
, vol.86
, pp. 641-647
-
-
Nielsen, R.1
-
37
-
-
20444430245
-
A scan for positively selected genes in the genomes of humans and chimpanzees
-
Nielsen, R., C. Bustamante, A. G. Clark, S. Glanowski, T. B. Sackton, M. J. Hubisz, A. Fledel-Alon, D. M. Tanenbaum, D. Civello, T. J. White, J. J. Sninsky, M. D. Adams, and M. Cargill. 2005. A scan for positively selected genes in the genomes of humans and chimpanzees. PLoS Biol. 3:976-985.
-
(2005)
PLoS Biol.
, vol.3
, pp. 976-985
-
-
Nielsen, R.1
Bustamante, C.2
Clark, A.G.3
Glanowski, S.4
Sackton, T.B.5
Hubisz, M.J.6
Fledel-Alon, A.7
Tanenbaum, D.M.8
Civello, D.9
White, T.J.10
Sninsky, J.J.11
Adams, M.D.12
Cargill, M.13
-
38
-
-
0000913208
-
Coalescent theory
-
D. J. Balding, M. Bishop, and C. Cannings, eds. John Wiley and Sons, West Sussex, U.K.
-
Nordborg, M. 2001. Coalescent theory. Pp. 179-212 in D. J. Balding, M. Bishop, and C. Cannings, eds. Handbook of statistical genetics. John Wiley and Sons, West Sussex, U.K.
-
(2001)
Handbook of Statistical Genetics
, pp. 179-212
-
-
Nordborg, M.1
-
39
-
-
0035109378
-
Haldane's sieve and adaptation from the standing genetic variation
-
Orr, H. A., and A. J. Betancourt. 2001. Haldane's sieve and adaptation from the standing genetic variation. Genetics 157:875-884.
-
(2001)
Genetics
, vol.157
, pp. 875-884
-
-
Orr, H.A.1
Betancourt, A.J.2
-
40
-
-
0035986885
-
Searching for evidence of positive selection in the human genome using patterns of microsatellite variability
-
Payseur, B. A., A. D. Cutter, and M. W. Nachman. 2002. Searching for evidence of positive selection in the human genome using patterns of microsatellite variability. Mol. Biol. Evol. 19:1143-1153.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 1143-1153
-
-
Payseur, B.A.1
Cutter, A.D.2
Nachman, M.W.3
-
41
-
-
0036196885
-
The signature of positive selection at randomly chosen loci
-
Przeworski, M. 2002. The signature of positive selection at randomly chosen loci. Genetics 160:1179-1189.
-
(2002)
Genetics
, vol.160
, pp. 1179-1189
-
-
Przeworski, M.1
-
43
-
-
0037227366
-
Intra-deme molecular diversity in spatially expanding populations
-
Ray, N., M. Currat, and L. Excoffier. 2003. Intra-deme molecular diversity in spatially expanding populations. Mol. Biol. Evol. 20:76-86.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 76-86
-
-
Ray, N.1
Currat, M.2
Excoffier, L.3
-
44
-
-
4143103433
-
Intercontinental spread of pyrimethamine-resistant malaria
-
Roper, C., R. Pearce, S. Nair, B. Sharp, F. Nosten, and T. Anderson. 2004. Intercontinental spread of pyrimethamine-resistant malaria. Science 305:1124.
-
(2004)
Science
, vol.305
, pp. 1124
-
-
Roper, C.1
Pearce, R.2
Nair, S.3
Sharp, B.4
Nosten, F.5
Anderson, T.6
-
45
-
-
13744257634
-
Variation after a selective sweep in a subdivided population
-
Santiago, E., and A. Caballero. 2005. Variation after a selective sweep in a subdivided population. Genetics 169:475-483.
-
(2005)
Genetics
, vol.169
, pp. 475-483
-
-
Santiago, E.1
Caballero, A.2
-
46
-
-
3042692452
-
Patterns of microsatellite variability among X chromosomes and autosomes indicate a high frequency of beneficial mutations in non-African D. simulans
-
Schofl, G., and C. Schlotterer. 2004. Patterns of microsatellite variability among X chromosomes and autosomes indicate a high frequency of beneficial mutations in non-African D. simulans. Mol. Biol. Evol. 21:1384-1390.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1384-1390
-
-
Schofl, G.1
Schlotterer, C.2
-
47
-
-
0029099781
-
Properties of statistical tests of neutrality for DNA polymorphism data
-
Simonsen, K. L., G. A. Churchill, and C. F. Aquadro. 1995. Properties of statistical tests of neutrality for DNA polymorphism data. Genetics 141:413-429.
-
(1995)
Genetics
, vol.141
, pp. 413-429
-
-
Simonsen, K.L.1
Churchill, G.A.2
Aquadro, C.F.3
-
48
-
-
0031825318
-
Genetic hitch-hiking in a subdivided population
-
Slatkin, M., and T. Wiehe. 1998. Genetic hitch-hiking in a subdivided population. Genet. Res. 71:155-160.
-
(1998)
Genet. Res.
, vol.71
, pp. 155-160
-
-
Slatkin, M.1
Wiehe, T.2
-
49
-
-
4644333804
-
SELSIM: A program to simulate population genetic data with natural selection and recombination
-
Spencer, C., and G. Coop. 2004. SELSIM: a program to simulate population genetic data with natural selection and recombination. Bioinformatics 20:3673-3675.
-
(2004)
Bioinformatics
, vol.20
, pp. 3673-3675
-
-
Spencer, C.1
Coop, G.2
-
50
-
-
7344226732
-
The effect of strongly selected substitutions on neutral polymorphism: Analytic results based on diffusion theory
-
Stephan, W., T. H. E. Wiehe, and M. Lenz. 1992. The effect of strongly selected substitutions on neutral polymorphism: analytic results based on diffusion theory. Theor. Popul. Biol. 41:237-254.
-
(1992)
Theor. Popul. Biol.
, vol.41
, pp. 237-254
-
-
Stephan, W.1
Wiehe, T.H.E.2
Lenz, M.3
-
51
-
-
4143088044
-
Genome scans of DNA variability in humans reveal evidence for selective sweeps outside of Africa
-
Storz, J. F., B. A. Payseur, and M. W. Nachman. 2004. Genome scans of DNA variability in humans reveal evidence for selective sweeps outside of Africa. Mol. Biol. Evol. 21:1800-1811.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1800-1811
-
-
Storz, J.F.1
Payseur, B.A.2
Nachman, M.W.3
-
52
-
-
0344585286
-
Adaptive evolution of genes and gene families
-
Swanson, W. J. 2003. Adaptive evolution of genes and gene families. Curr. Opin. Genet. Dev. 13:617-622.
-
(2003)
Curr. Opin. Genet. Dev.
, vol.13
, pp. 617-622
-
-
Swanson, W.J.1
-
53
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
Tajima, F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595.
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
54
-
-
28644448510
-
Directional selection on alleles of arbitrary dominance
-
In press
-
Teshima, K. M., and M. Przeworski. 2005. Directional selection on alleles of arbitrary dominance. Genetics In press.
-
(2005)
Genetics
-
-
Teshima, K.M.1
Przeworski, M.2
-
55
-
-
0033955443
-
A comparison of estimators of the population recombination rate
-
Wall, J. D. 2000. A comparison of estimators of the population recombination rate. Mol. Biol. Evol. 17:156-163.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 156-163
-
-
Wall, J.D.1
-
56
-
-
0016491430
-
On the number of segregating sites in genetic models without recombination
-
Watterson, G. A. 1975. On the number of segregating sites in genetic models without recombination. Theor. Popul. Biol. 7:256-276.
-
(1975)
Theor. Popul. Biol.
, vol.7
, pp. 256-276
-
-
Watterson, G.A.1
-
57
-
-
0038124402
-
Fixation probability and time in subdivided populations
-
Whitlock, M. C. 2003. Fixation probability and time in subdivided populations. Genetics 164:767-779.
-
(2003)
Genetics
, vol.164
, pp. 767-779
-
-
Whitlock, M.C.1
-
58
-
-
19744371138
-
The effects of artificial selection on the maize genome
-
Wright, S. I., I. V. Bi, S. G. Schroeder, M. Yamasaki, J. F. Doebley, M. D. McMullen, and B. S. Gaut. 2005. The effects of artificial selection on the maize genome. Science 308:1310-1314.
-
(2005)
Science
, vol.308
, pp. 1310-1314
-
-
Wright, S.I.1
Bi, I.V.2
Schroeder, S.G.3
Yamasaki, M.4
Doebley, J.F.5
McMullen, M.D.6
Gaut, B.S.7
-
59
-
-
0033639150
-
Statistical methods for detecting molecular adaptation
-
Yang, Z., and J. P. Bielawski. 2000. Statistical methods for detecting molecular adaptation. Trends Ecol. Evol. 15:496-503.
-
(2000)
Trends Ecol. Evol.
, vol.15
, pp. 496-503
-
-
Yang, Z.1
Bielawski, J.P.2
|