-
1
-
-
80755175389
-
Characterization of ubiquitination dependent dynamics in growth factor receptor signaling by quantitative proteomics
-
Akimov V, Rigbolt KT, Nielsen MM, Blagoev B (2011) Characterization of ubiquitination dependent dynamics in growth factor receptor signaling by quantitative proteomics. Mol BioSyst 7:3223-3233
-
(2011)
Mol BioSyst
, vol.7
, pp. 3223-3233
-
-
Akimov, V.1
Rigbolt, K.T.2
Nielsen, M.M.3
Blagoev, B.4
-
2
-
-
73649130269
-
Pathogenesis of Parkinsons disease: Emerging role of molecular chaperones
-
Bandopadhyay R, de Belleroche J (2010) Pathogenesis of Parkinsons disease: emerging role of molecular chaperones. Trends Mol Med 16:27-36
-
(2010)
Trends Mol Med
, vol.16
, pp. 27-36
-
-
Bandopadhyay, R.1
De Belleroche, J.2
-
3
-
-
79951512774
-
Diverse polyubiquitin chains accumulate following 26S proteasomal dysfunction in mammalian neurones
-
Bedford L, Layfield R, Mayer RJ, Peng J, Xu P (2011) Diverse polyubiquitin chains accumulate following 26S proteasomal dysfunction in mammalian neurones. Neurosci Lett 491:44-47
-
(2011)
Neurosci Lett
, vol.491
, pp. 44-47
-
-
Bedford, L.1
Layfield, R.2
Mayer, R.J.3
Peng, J.4
Xu, P.5
-
4
-
-
84862986431
-
HERC2 coordinates ubiquitin-dependent assembly of DNA repair factors on damaged chromosomes
-
Bekker-Jensen S, Rendtlew Danielsen J, Fugger K, Gromova I, Nerstedt A, Lukas C, Bartek J, Lukas J, Mailand N (2010) HERC2 coordinates ubiquitin-dependent assembly of DNA repair factors on damaged chromosomes. Nat Cell Biol 12:80-86
-
(2010)
Nat Cell Biol
, vol.12
, pp. 80-86
-
-
Bekker-Jensen, S.1
Rendtlew Danielsen, J.2
Fugger, K.3
Gromova, I.4
Nerstedt, A.5
Lukas, C.6
Bartek, J.7
Lukas, J.8
Mailand, N.9
-
5
-
-
34547807613
-
Global changes to the ubiquitin system in Huntington's disease
-
DOI 10.1038/nature06022, PII NATURE06022
-
Bennett EJ, Shaler TA, Woodman B, Ryu KY, Zaitseva TS, Becker CH, Bates GP, Schulman H, Kopito RR (2007) Global changes to the ubiquitin system in Huntingtons disease. Nature 448:704-708 (Pubitemid 47236860)
-
(2007)
Nature
, vol.448
, Issue.7154
, pp. 704-708
-
-
Bennett, E.J.1
Shaler, T.A.2
Woodman, B.3
Ryu, K.-Y.4
Zaitseva, T.S.5
Becker, C.H.6
Bates, G.P.7
Schulman, H.8
Kopito, R.R.9
-
6
-
-
63649144413
-
Principles of ubiquitin and SUMO modifications in DNA repair
-
Bergink S, Jentsch S (2009) Principles of ubiquitin and SUMO modifications in DNA repair. Nature 458:461-467
-
(2009)
Nature
, vol.458
, pp. 461-467
-
-
Bergink, S.1
Jentsch, S.2
-
7
-
-
63649116570
-
Ubiquitylation in innate and adaptive immunity
-
Bhoj VG, Chen ZJ (2009) Ubiquitylation in innate and adaptive immunity. Nature 458:430-437
-
(2009)
Nature
, vol.458
, pp. 430-437
-
-
Bhoj, V.G.1
Chen, Z.J.2
-
8
-
-
18844464056
-
Identification of the familial cylindromatosis tumour-suppressor gene
-
DOI 10.1038/76006
-
Bignell GR, Warren W, Seal S, Takahashi M, Rapley E, Barfoot R, Green H, Brown C, Biggs PJ, Lakhani SR et al (2000) Identification of the familial cylindromatosis tumour-suppressor gene. Nat Genet 25:160-165 (Pubitemid 30394985)
-
(2000)
Nature Genetics
, vol.25
, Issue.2
, pp. 160-165
-
-
Bignell, G.R.1
Warren, W.2
Seal, S.3
Takahashi, M.4
Rapley, E.5
Barfoot, R.6
Green, H.7
Brown, C.8
Biggs, P.J.9
Lakhani, S.R.10
Jones, C.11
Hansen, J.12
Blair, E.13
Hofmann, B.14
Siebert, R.15
Turner, G.16
Gareth Evans, D.17
Schrander-Stumpel, C.18
Beemer, F.A.19
Van Den Ouweland, A.20
Halley, D.21
Delpech, B.22
Cleveland, M.G.23
Leigh, I.24
Leisti, J.25
Rasmussen, S.26
Wallace, M.R.27
Fenske, C.28
Banerjee, P.29
Oiso, N.30
Chaggar, R.31
Merrett, S.32
Leonard, N.33
Huber, M.34
Hohl, D.35
Chapman, P.36
Burn, J.37
Swift, S.38
Smith, A.39
Ashworth, A.40
Stratton, M.R.41
more..
-
9
-
-
76749131595
-
Autophosphorylated CaMKIIalpha acts as a scaffold to recruit proteasomes to dendritic spines
-
Bingol B, Wang CF, Arnott D, Cheng D, Peng J, Sheng M (2010) Autophosphorylated CaMKIIalpha acts as a scaffold to recruit proteasomes to dendritic spines. Cell 140:567-578
-
(2010)
Cell
, vol.140
, pp. 567-578
-
-
Bingol, B.1
Wang, C.F.2
Arnott, D.3
Cheng, D.4
Peng, J.5
Sheng, M.6
-
10
-
-
73549090361
-
Efficient internalization of MHC i requires lysine-11 and lysine- 63 mixed linkage polyubiquitin chains
-
Boname JM, Thomas M, Stagg HR, Xu P, Peng J, Lehner PJ (2010) Efficient internalization of MHC I requires lysine-11 and lysine- 63 mixed linkage polyubiquitin chains. Traffic 11:210-220
-
(2010)
Traffic
, vol.11
, pp. 210-220
-
-
Boname, J.M.1
Thomas, M.2
Stagg, H.R.3
Xu, P.4
Peng, J.5
Lehner, P.J.6
-
11
-
-
77955417276
-
Lys11-linked ubiquitin chains adopt compact conformations and are preferentially hydrolyzed by the deubiquitinase Cezanne
-
Bremm A, Freund SM, Komander D (2010) Lys11-linked ubiquitin chains adopt compact conformations and are preferentially hydrolyzed by the deubiquitinase Cezanne. Nat Struct Mol Biol 17:939-947
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 939-947
-
-
Bremm, A.1
Freund, S.M.2
Komander, D.3
-
12
-
-
70649083505
-
A label-free quantitative proteomics strategy to identify E3 ubiquitin ligase substrates targeted to proteasome degradation
-
Burande CF, Heuze ML, Lamsoul I, Monsarrat B, Uttenweiler-Joseph S, Lutz PG (2009) A label-free quantitative proteomics strategy to identify E3 ubiquitin ligase substrates targeted to proteasome degradation. Mol Cell Proteomics 8:1719-1727
-
(2009)
Mol Cell Proteomics
, vol.8
, pp. 1719-1727
-
-
Burande, C.F.1
Heuze, M.L.2
Lamsoul, I.3
Monsarrat, B.4
Uttenweiler-Joseph, S.5
Lutz, P.G.6
-
13
-
-
21744433861
-
Biochemistry: Ubiquitination on nonlysine residues by a viral E3 ubiquitin ligase
-
DOI 10.1126/science.1110340
-
Cadwell K, Coscoy L (2005) Ubiquitination on nonlysine residues by a viral E3 ubiquitin ligase. Science 309:127-130 (Pubitemid 40934990)
-
(2005)
Science
, vol.309
, Issue.5731
, pp. 127-130
-
-
Cadwell, K.1
Coscoy, L.2
-
14
-
-
0024514688
-
A multiubiquitin chain is confined to specific lysine in a targeted short-lived protein
-
Chau V, Tobias JW, Bachmair A, Marriott D, Ecker DJ, Gonda DK, Varshavsky A (1989) A multiubiquitin chain is confined to specific lysine in a targeted short-lived protein. Science 243:1576-1583 (Pubitemid 19090506)
-
(1989)
Science
, vol.243
, Issue.4898
, pp. 1576-1583
-
-
Chau, V.1
Tobias, J.W.2
Bachmair, A.3
Marriott, D.4
Ecker, D.J.5
Gonda, D.K.6
Varshavsky, A.7
-
15
-
-
34548445136
-
Neuronal morphogenesis is regulated by the interplay between cyclin-dependent kinase 5 and the ubiquitin ligase mind bomb 1
-
DOI 10.1523/JNEUROSCI.1408-07.2007
-
Choe EA, Liao L, Zhou JY, Cheng D, Duong DM, Jin P, Tsai LH, Peng J (2007) Neuronal morphogenesis is regulated by the interplay between cyclin-dependent kinase 5 and the ubiquitin ligase mind bomb 1. J Neurosci 27:9503-9512 (Pubitemid 47358202)
-
(2007)
Journal of Neuroscience
, vol.27
, Issue.35
, pp. 9503-9512
-
-
Choe, E.-A.1
Liao, L.2
Zhou, J.-Y.3
Cheng, D.4
Duong, D.M.5
Jin, P.6
Tsai, L.-H.7
Peng, J.8
-
16
-
-
77952956167
-
Decoding signalling networks by mass spectrometry-based proteomics
-
Choudhary C, Mann M (2010) Decoding signalling networks by mass spectrometry-based proteomics. Nat Rev Mol Cell Biol 11:427-439
-
(2010)
Nat Rev Mol Cell Biol
, vol.11
, pp. 427-439
-
-
Choudhary, C.1
Mann, M.2
-
17
-
-
11244309014
-
Proteolysis: From the lysosome to ubiquitin and the proteasome
-
Ciechanover A (2005) Proteolysis: from the lysosome to ubiquitin and the proteasome. Nat Rev Mol Cell Biol 6:79-87
-
(2005)
Nat Rev Mol Cell Biol
, vol.6
, pp. 79-87
-
-
Ciechanover, A.1
-
18
-
-
1442323729
-
N-terminal ubiquitination: More protein substrates join in
-
DOI 10.1016/j.tcb.2004.01.004, PII S0962892404000236
-
Ciechanover A, Ben-Saadon R (2004) N-terminal ubiquitination: more protein substrates join in. Trends Cell Biol 14:103-106 (Pubitemid 38293450)
-
(2004)
Trends in Cell Biology
, vol.14
, Issue.3
, pp. 103-106
-
-
Ciechanover, A.1
Ben-Saadon, R.2
-
19
-
-
0141987860
-
The ubiquitin proteasome system in neurodegenerative diseases: Sometimes the chicken, sometimes the egg
-
DOI 10.1016/S0896-6273(03)00606-8
-
Ciechanover A, Brundin P (2003) The ubiquitin proteasome system in neurodegenerative diseases: sometimes the chicken, sometimes the egg. Neuron 40:427-446 (Pubitemid 37244106)
-
(2003)
Neuron
, vol.40
, Issue.2
, pp. 427-446
-
-
Ciechanover, A.1
Brundin, P.2
-
20
-
-
0021140995
-
Ubiquitin dependence of selective protein degradation demonstrated in the mammalian cell cycle mutant ts85
-
Ciechanover A, Finley D, Varshavsky A (1984) Ubiquitin dependence of selective protein degradation demonstrated in the mammalian cell cycle mutant ts85. Cell 37:57-66 (Pubitemid 14079836)
-
(1984)
Cell
, vol.37
, Issue.1
, pp. 57-66
-
-
Ciechanover, A.1
Finley, D.2
Varshavsky, A.3
-
21
-
-
0018187738
-
A heat-stable polypeptide component of an ATP-dependent proteolytic system from reticulocytes
-
DOI 10.1016/0006-291X(78)91249-4
-
Ciehanover A, Hod Y, Hershko A (1978) A heat-stable polypeptide component of an ATP-dependent proteolytic system from reticulocytes. Biochem Biophys Res Commun 81:1100-1105 (Pubitemid 8331462)
-
(1978)
Biochemical and Biophysical Research Communications
, vol.81
, Issue.4
, pp. 1100-1105
-
-
Ciehanover, A.1
Hod, Y.2
Hershko, A.3
-
22
-
-
37249014081
-
The biological impact of mass-spectrometry-based proteomics
-
DOI 10.1038/nature06525, PII NATURE06525
-
Cravatt BF, Simon GM, Yates JR 3rd (2007) The biological impact of mass-spectrometry-based proteomics. Nature 450:991-1000 (Pubitemid 350273629)
-
(2007)
Nature
, vol.450
, Issue.7172
, pp. 991-1000
-
-
Cravatt, B.F.1
Simon, G.M.2
Yates III, J.R.3
-
23
-
-
79953197650
-
Polyubiquitin linkage profiles in three models of proteolytic stress suggest the etiology of Alzheimer disease
-
Dammer EB, Na CH, Xu P, Seyfried NT, Duong DM, Cheng D, Gearing M, Rees H, Lah JJ, Levey AI et al (2011) Polyubiquitin linkage profiles in three models of proteolytic stress suggest the etiology of Alzheimer disease. J Biol Chem 286:10457-10465
-
(2011)
J Biol Chem
, vol.286
, pp. 10457-10465
-
-
Dammer, E.B.1
Na, C.H.2
Xu, P.3
Seyfried, N.T.4
Duong, D.M.5
Cheng, D.6
Gearing, M.7
Rees, H.8
Lah, J.J.9
Levey, A.I.10
-
24
-
-
79953198294
-
Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level
-
M110003590
-
Danielsen JM, Sylvestersen KB, Bekker-Jensen S, Szklarczyk D, Poulsen JW, Horn H, Jensen LJ, Mailand N, and Nielsen ML (2011). Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. Mol Cell Proteomics 10, M110 003590
-
(2011)
Mol Cell Proteomics
, vol.10
-
-
Danielsen, J.M.1
Sylvestersen, K.B.2
Bekker-Jensen, S.3
Szklarczyk, D.4
Poulsen, J.W.5
Horn, H.6
Jensen, L.J.7
Mailand, N.8
Nielsen, M.L.9
-
25
-
-
42349105213
-
Relative quantification of proteins in human cerebrospinal fluids by MS/MS using 6-plex isobaric tags
-
DOI 10.1021/ac702422x
-
Dayon L, Hainard A, Licker V, Turck N, Kuhn K, Hochstrasser DF, Burkhard PR, Sanchez JC (2008) Relative quantification of proteins in human cerebrospinal fluids by MS/MS using 6-plex isobaric tags. Anal Chem 80:2921-2931 (Pubitemid 351556457)
-
(2008)
Analytical Chemistry
, vol.80
, Issue.8
, pp. 2921-2931
-
-
Dayon, L.1
Hainard, A.2
Licker, V.3
Turck, N.4
Kuhn, K.5
Hochstrasser, D.F.6
Burkhard, P.R.7
Sanchez, J.-C.8
-
26
-
-
55249096894
-
Comprehensive mass-spectrometry- based proteome quantification of haploid versus diploid yeast
-
de Godoy LM, Olsen JV, Cox J, Nielsen ML, Hubner NC, Frohlich F, Walther TC, Mann M (2008) Comprehensive mass-spectrometry- based proteome quantification of haploid versus diploid yeast. Nature 455:1251-1254
-
(2008)
Nature
, vol.455
, pp. 1251-1254
-
-
De Godoy, L.M.1
Olsen, J.V.2
Cox, J.3
Nielsen, M.L.4
Hubner, N.C.5
Frohlich, F.6
Walther, T.C.7
Mann, M.8
-
27
-
-
80052580969
-
Mutations in UBQLN2 cause dominant X-linked juvenile and adult-onset ALS and ALS/dementia
-
Deng HX, Chen W, Hong ST, Boycott KM, Gorrie GH, Siddique N, Yang Y, Fecto F, Shi Y, Zhai H et al (2011) Mutations in UBQLN2 cause dominant X-linked juvenile and adult-onset ALS and ALS/dementia. Nature 477:211-215
-
(2011)
Nature
, vol.477
, pp. 211-215
-
-
Deng, H.X.1
Chen, W.2
Hong, S.T.3
Boycott, K.M.4
Gorrie, G.H.5
Siddique, N.6
Yang, Y.7
Fecto, F.8
Shi, Y.9
Zhai, H.10
-
28
-
-
33947712748
-
Tryptic digestion of ubiquitin standards reveals an improved strategy for identifying ubiquitinated proteins by mass spectrometry
-
DOI 10.1002/pmic.200600410
-
Denis NJ, Vasilescu J, Lambert JP, Smith JC, Figeys D (2007) Tryptic digestion of ubiquitin standards reveals an improved strategy for identifying ubiquitinated proteins by mass spectrometry. Proteomics 7:868-874 (Pubitemid 46506734)
-
(2007)
Proteomics
, vol.7
, Issue.6
, pp. 868-874
-
-
Denis, N.J.1
Vasilescu, J.2
Lambert, J.-P.3
Smith, J.C.4
Figeys, D.5
-
30
-
-
51649100549
-
Scaled-down purification protocol to access proteomic analysis of 20S proteasome from human tissue samples: Comparison of normal and tumor colorectal cells
-
Ducoux-Petit M, Uttenweiler-Joseph S, Brichory F, Bousquet-Dubouch MP, Burlet-Schiltz O, Haeuw JF, Monsarrat B (2008) Scaled-down purification protocol to access proteomic analysis of 20S proteasome from human tissue samples: comparison of normal and tumor colorectal cells. J Proteome Res 7:2852-2859
-
(2008)
J Proteome Res
, vol.7
, pp. 2852-2859
-
-
Ducoux-Petit, M.1
Uttenweiler-Joseph, S.2
Brichory, F.3
Bousquet-Dubouch, M.P.4
Burlet-Schiltz, O.5
Haeuw, J.F.6
Monsarrat, B.7
-
31
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
Eng J, McCormack AL, Yates JR 3rd (1994) An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J Am Soc Mass Spectrom 5:976-989
-
(1994)
J Am Soc Mass Spectrom
, vol.5
, pp. 976-989
-
-
Eng, J.1
McCormack, A.L.2
Yates III, J.R.3
-
32
-
-
65649115267
-
Recognition and processing of ubiquitin-protein conjugates by the proteasome
-
Finley D (2009) Recognition and processing of ubiquitin-protein conjugates by the proteasome. Annu Rev Biochem 78:477-513
-
(2009)
Annu Rev Biochem
, vol.78
, pp. 477-513
-
-
Finley, D.1
-
33
-
-
0021139080
-
Thermolability of ubiquitin-activating enzyme from the mammalian cell cycle mutant ts85
-
Finley D, Ciechanover A, Varshavsky A (1984) Thermolability of ubiquitin-activating enzyme from the mammalian cell cycle mutant ts85. Cell 37:43-55 (Pubitemid 14079835)
-
(1984)
Cell
, vol.37
, Issue.1
, pp. 43-55
-
-
Finley, D.1
Ciechanover, A.2
Varshavsky, A.3
-
34
-
-
79955780605
-
A novel strategy to isolate ubiquitin conjugates reveals wide role for ubiquitination during neural development
-
M110002188
-
Franco M, Seyfried NT, Brand AH, Peng J, and Mayor U (2011) A novel strategy to isolate ubiquitin conjugates reveals wide role for ubiquitination during neural development. Mol Cell Proteomics 10, M110 002188
-
(2011)
Mol Cell Proteomics
, vol.10
-
-
Franco, M.1
Seyfried, N.T.2
Brand, A.H.3
Peng, J.4
Mayor, U.5
-
35
-
-
66449117927
-
Mutations in a BTB-Kelch protein, KLHL7, cause autosomaldominant retinitis pigmentosa
-
Friedman JS, Ray JW, Waseem N, Johnson K, Brooks MJ, Hugosson T, Breuer D, Branham KE, Krauth DS, Bowne SJ et al (2009) Mutations in a BTB-Kelch protein, KLHL7, cause autosomaldominant retinitis pigmentosa. Am J Hum Genet 84:792-800
-
(2009)
Am J Hum Genet
, vol.84
, pp. 792-800
-
-
Friedman, J.S.1
Ray, J.W.2
Waseem, N.3
Johnson, K.4
Brooks, M.J.5
Hugosson, T.6
Breuer, D.7
Branham, K.E.8
Krauth, D.S.9
Bowne, S.J.10
-
36
-
-
33750610338
-
Characterization of neurohistone variants and posttranslational modifications by electron capture dissociation mass spectrometry
-
Garciaa BA, Siutib N, Thomasb CE, Mizzena CA, Kelleher NL (2007) Characterization of neurohistone variants and posttranslational modifications by electron capture dissociation mass spectrometry. Int J Mass Spectr 259:184-196
-
(2007)
Int J Mass Spectr
, vol.259
, pp. 184-196
-
-
Garciaa, B.A.1
Siutib, N.2
Thomasb, C.E.3
Mizzena, C.A.4
Kelleher, N.L.5
-
37
-
-
33847066706
-
Functions of the proteasome: From protein degradation and immune surveillance to cancer therapy
-
Goldberg AL (2007) Functions of the proteasome: from protein degradation and immune surveillance to cancer therapy. Biochem Soc Trans 35:12-17
-
(2007)
Biochem Soc Trans
, vol.35
, pp. 12-17
-
-
Goldberg, A.L.1
-
39
-
-
2442437350
-
Isolation of a polypeptide that has lymphocytedifferentiating properties and is probably represented universally in living cells
-
Goldstein G, Scheid M, Hammerling U, Schlesinger DH, Niall HD, Boyse EA (1975) Isolation of a polypeptide that has lymphocytedifferentiating properties and is probably represented universally in living cells. Proc Natl Acad Sci USA 72:11-15
-
(1975)
Proc Natl Acad Sci USA
, vol.72
, pp. 11-15
-
-
Goldstein, G.1
Scheid, M.2
Hammerling, U.3
Schlesinger, D.H.4
Niall, H.D.5
Boyse, E.A.6
-
40
-
-
77957817388
-
A protein interaction network for ECM29 links the 26S proteasome to molecular motors and endosomal components
-
Gorbea C, Pratt G, Ustrell V, Bell R, Sahasrabudhe S, Hughes RE, Rechsteiner M (2010) A protein interaction network for ECM29 links the 26S proteasome to molecular motors and endosomal components. J Biol Chem 285:31616-31633
-
(2010)
J Biol Chem
, vol.285
, pp. 31616-31633
-
-
Gorbea, C.1
Pratt, G.2
Ustrell, V.3
Bell, R.4
Sahasrabudhe, S.5
Hughes, R.E.6
Rechsteiner, M.7
-
41
-
-
78149276256
-
Contribution of K11-linked ubiquitination to MIR2-mediated MHC class i internalization
-
Goto E, Yamanaka Y, Ishikawa A, Aoki-Kawasumi M, Mito-Yoshida M, Ohmura-Hoshino M, Matsuki Y, Kajikawa M, Hirano H, Ishido S (2010) Contribution of K11-linked ubiquitination to MIR2-mediated MHC class I internalization. J Biol Chem 285:35311-35319
-
(2010)
J Biol Chem
, vol.285
, pp. 35311-35319
-
-
Goto, E.1
Yamanaka, Y.2
Ishikawa, A.3
Aoki-Kawasumi, M.4
Mito-Yoshida, M.5
Ohmura-Hoshino, M.6
Matsuki, Y.7
Kajikawa, M.8
Hirano, H.9
Ishido, S.10
-
42
-
-
68949206409
-
Applying mass spectrometry-based proteomics to genetics, genomics and network biology
-
Gstaiger M, Aebersold R (2009) Applying mass spectrometry-based proteomics to genetics, genomics and network biology. Nat Rev Genet 10:617-627
-
(2009)
Nat Rev Genet
, vol.10
, pp. 617-627
-
-
Gstaiger, M.1
Aebersold, R.2
-
43
-
-
51749093587
-
Characterization of the proteasome interaction network using a QTAX-based tag-team strategy and protein interaction network analysis
-
Guerrero C, Milenkovic T, Przulj N, Kaiser P, Huang L (2008) Characterization of the proteasome interaction network using a QTAX-based tag-team strategy and protein interaction network analysis. Proc Natl Acad Sci USA 105:13333-13338
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 13333-13338
-
-
Guerrero, C.1
Milenkovic, T.2
Przulj, N.3
Kaiser, P.4
Huang, L.5
-
45
-
-
0141442586
-
Regulation of membrane protein transport by ubiquitin and ubiquitin-binding proteins
-
DOI 10.1146/annurev.cellbio.19.110701.154617
-
Hicke L, Dunn R (2003) Regulation of membrane protein transport by ubiquitin and ubiquitin-binding proteins. Annu Rev Cell Dev Biol 19:141-172 (Pubitemid 37487346)
-
(2003)
Annual Review of Cell and Developmental Biology
, vol.19
, pp. 141-172
-
-
Hicke, L.1
Dunn, R.2
-
46
-
-
53849121959
-
Efficient approaches for characterizing ubiquitinated proteins
-
Hjerpe R, Rodriguez MS (2008) Efficient approaches for characterizing ubiquitinated proteins. Biochem Soc Trans 36:823-827
-
(2008)
Biochem Soc Trans
, vol.36
, pp. 823-827
-
-
Hjerpe, R.1
Rodriguez, M.S.2
-
47
-
-
0034253588
-
Evolution and function of ubiquitin-like protein-conjugation systems
-
Hochstrasser M (2000) Evolution and function of ubiquitin-like protein-conjugation systems. Nat Cell Biol 2:E153-E157
-
(2000)
Nat Cell Biol
, vol.2
-
-
Hochstrasser, M.1
-
48
-
-
63649113699
-
Origin and function of ubiquitin-like proteins
-
Hochstrasser M (2009) Origin and function of ubiquitin-like proteins. Nature 458:422-429
-
(2009)
Nature
, vol.458
, pp. 422-429
-
-
Hochstrasser, M.1
-
49
-
-
71049168842
-
Stable isotope labeling by amino acids in cell culture and differential plasma membrane proteome quantitation identify new substrates for the MARCH9 transmembrane E3 ligase
-
Hor S, Ziv T, Admon A, Lehner PJ (2009) Stable isotope labeling by amino acids in cell culture and differential plasma membrane proteome quantitation identify new substrates for the MARCH9 transmembrane E3 ligase. Mol Cell Proteomics 8:1959-1971
-
(2009)
Mol Cell Proteomics
, vol.8
, pp. 1959-1971
-
-
Hor, S.1
Ziv, T.2
Admon, A.3
Lehner, P.J.4
-
50
-
-
0023655017
-
Purification of two high molecular weight proteases from rabbit reticulocyte lysate
-
Hough R, Pratt G, Rechsteiner M (1987) Purification of two high molecular weight proteases from rabbit reticulocyte lysate. J Biol Chem 262:8303-8313
-
(1987)
J Biol Chem
, vol.262
, pp. 8303-8313
-
-
Hough, R.1
Pratt, G.2
Rechsteiner, M.3
-
51
-
-
77954953473
-
K33-linked polyubiquitination of T cell receptor-zeta regulates proteolysis-independent T cell signaling
-
Huang H, Jeon MS, Liao L, Yang C, Elly C, Yates JR 3rd, Liu YC (2010) K33-linked polyubiquitination of T cell receptor-zeta regulates proteolysis-independent T cell signaling. Immunity 33:60-70
-
(2010)
Immunity
, vol.33
, pp. 60-70
-
-
Huang, H.1
Jeon, M.S.2
Liao, L.3
Yang, C.4
Elly, C.5
Yates Iii, J.R.6
Liu, Y.C.7
-
52
-
-
78650466243
-
A tissue-specific atlas of mouse protein phosphorylation and expression
-
Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villen J, Haas W, Sowa ME, Gygi SP (2010) A tissue-specific atlas of mouse protein phosphorylation and expression. Cell 143:1174-1189
-
(2010)
Cell
, vol.143
, pp. 1174-1189
-
-
Huttlin, E.L.1
Jedrychowski, M.P.2
Elias, J.E.3
Goswami, T.4
Rad, R.5
Beausoleil, S.A.6
Villen, J.7
Haas, W.8
Sowa, M.E.9
Gygi, S.P.10
-
53
-
-
34247528121
-
A proteomics approach to identify the ubiquitinated proteins in mouse heart
-
DOI 10.1016/j.bbrc.2007.04.015, PII S0006291X07007061
-
Jeon HB, Choi ES, Yoon JH, Hwang JH, Chang JW, Lee EK, Choi HW, Park ZY, Yoo YJ (2007) A proteomics approach to identify the ubiquitinated proteins in mouse heart. Biochem Biophys Res Commun 357:731-736 (Pubitemid 46653841)
-
(2007)
Biochemical and Biophysical Research Communications
, vol.357
, Issue.3
, pp. 731-736
-
-
Jeon, H.B.1
Choi, E.S.2
Yoon, J.H.3
Hwang, J.H.4
Chang, J.W.5
Lee, E.K.6
Choi, H.W.7
Park, Z.-Y.8
Yoo, Y.J.9
-
54
-
-
61349200777
-
Using mass spectrometry to identify ubiquitin and ubiquitin-like protein conjugation sites
-
Jeram SM, Srikumar T, Pedrioli PG, Raught B (2009) Using mass spectrometry to identify ubiquitin and ubiquitin-like protein conjugation sites. Proteomics 9:922-934
-
(2009)
Proteomics
, vol.9
, pp. 922-934
-
-
Jeram, S.M.1
Srikumar, T.2
Pedrioli, P.G.3
Raught, B.4
-
55
-
-
0029119522
-
A proteolytic pathway that recognizes ubiquitin as a degradation signal
-
Johnson ES, Ma PC, Ota IM, Varshavsky A (1995) A proteolytic pathway that recognizes ubiquitin as a degradation signal. J Biol Chem 270:17442-17456
-
(1995)
J Biol Chem
, vol.270
, pp. 17442-17456
-
-
Johnson, E.S.1
Ma, P.C.2
Ota, I.M.3
Varshavsky, A.4
-
56
-
-
54549113030
-
The von Hippel-Lindau tumour suppressor protein: O2 sensing and cancer
-
Kaelin WG Jr (2008) The von Hippel-Lindau tumour suppressor protein: O2 sensing and cancer. Nat Rev Cancer 8:865-873
-
(2008)
Nat Rev Cancer
, vol.8
, pp. 865-873
-
-
Kaelin Jr., W.G.1
-
57
-
-
79961000536
-
Protein standard absolute quantification (PSAQ) method for the measurement of cellular ubiquitin pools
-
Kaiser SE, Riley BE, Shaler TA, Trevino RS, Becker CH, Schulman H, Kopito RR (2011) Protein standard absolute quantification (PSAQ) method for the measurement of cellular ubiquitin pools. Nat Methods 8:691-696
-
(2011)
Nat Methods
, vol.8
, pp. 691-696
-
-
Kaiser, S.E.1
Riley, B.E.2
Shaler, T.A.3
Trevino, R.S.4
Becker, C.H.5
Schulman, H.6
Kopito, R.R.7
-
58
-
-
78651092959
-
Development of a novel cross-linking strategy for fast and accurate identification of cross-linked peptides of protein complexes
-
M110.002212
-
Kao A, Chiu CL, Vellucci D, Yang Y, Patel VR, Guan S, Randall A, Baldi P, Rychnovsky SD, and Huang L (2011) Development of a novel cross-linking strategy for fast and accurate identification of cross-linked peptides of protein complexes. Mol Cell Proteomics 10, M110.002212
-
(2011)
Mol Cell Proteomics
, vol.10
-
-
Kao, A.1
Chiu, C.L.2
Vellucci, D.3
Yang, Y.4
Patel, V.R.5
Guan, S.6
Randall, A.7
Baldi, P.8
Rychnovsky, S.D.9
Huang, L.10
-
60
-
-
82455179484
-
Systematic and quantitative assessment of the ubiquitin-modified proteome
-
Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ et al (2011) Systematic and quantitative assessment of the ubiquitin-modified proteome. Mol Cell 44:325-340
-
(2011)
Mol Cell
, vol.44
, pp. 325-340
-
-
Kim, W.1
Bennett, E.J.2
Huttlin, E.L.3
Guo, A.4
Li, J.5
Possemato, A.6
Sowa, M.E.7
Rad, R.8
Rush, J.9
Comb, M.J.10
-
61
-
-
33750219981
-
A ubiquitin ligase complex assembles linear polyubiquitin chains
-
DOI 10.1038/sj.emboj.7601360, PII 7601360
-
Kirisako T, Kamei K, Murata S, Kato M, Fukumoto H, Kanie M, Sano S, Tokunaga F, Tanaka K, Iwai K (2006) A ubiquitin ligase complex assembles linear polyubiquitin chains. EMBO J 25:4877-4887 (Pubitemid 44607032)
-
(2006)
EMBO Journal
, vol.25
, Issue.20
, pp. 4877-4887
-
-
Kirisako, T.1
Kamei, K.2
Murata, S.3
Kato, M.4
Fukumoto, H.5
Kanie, M.6
Sano, S.7
Tokunaga, F.8
Tanaka, K.9
Iwai, K.10
-
62
-
-
23144452492
-
Weighing in on ubiquitin: The expanding role of mass-spectrometry-based proteomics
-
DOI 10.1038/ncb0805-750
-
Kirkpatrick DS, Denison C, Gygi SP (2005) Weighing in on ubiquitin: the expanding role of mass-spectrometry-based proteomics. Nat Cell Biol 7:750-757 (Pubitemid 41079043)
-
(2005)
Nature Cell Biology
, vol.7
, Issue.8
, pp. 750-757
-
-
Kirkpatrick, D.S.1
Denison, C.2
Gygi, S.P.3
-
63
-
-
33745742269
-
Quantitative analysis of in vitro ubiquitinated cyclin B1 reveals complex chain topology
-
Kirkpatrick DS, Hathaway NA, Hanna J, Elsasser S, Rush J, Finley D, King RW, Gygi SP (2006) Quantitative analysis of in vitro ubiquitinated cyclin B1 reveals complex chain topology. Nat Cell Biol 8:700-710
-
(2006)
Nat Cell Biol
, vol.8
, pp. 700-710
-
-
Kirkpatrick, D.S.1
Hathaway, N.A.2
Hanna, J.3
Elsasser, S.4
Rush, J.5
Finley, D.6
King, R.W.7
Gygi, S.P.8
-
64
-
-
68049084674
-
Breaking the chains: Structure and function of the deubiquitinases
-
Komander D, Clague MJ, Urbe S (2009) Breaking the chains: structure and function of the deubiquitinases. Nat Rev Mol Cell Biol 10:550-563
-
(2009)
Nat Rev Mol Cell Biol
, vol.10
, pp. 550-563
-
-
Komander, D.1
Clague, M.J.2
Urbe, S.3
-
65
-
-
77957893483
-
A global census of fission yeast deubiquitinating enzyme localization and interaction networks reveals distinct compartmentalization profiles and overlapping functions in endocytosis and polarity
-
Kouranti I, McLean JR, Feoktistova A, Liang P, Johnson AE, Roberts-Galbraith RH, Gould KL (2010) A global census of fission yeast deubiquitinating enzyme localization and interaction networks reveals distinct compartmentalization profiles and overlapping functions in endocytosis and polarity. PLoS Biol 8:e1000471
-
(2010)
PLoS Biol
, vol.8
-
-
Kouranti, I.1
McLean, J.R.2
Feoktistova, A.3
Liang, P.4
Johnson, A.E.5
Roberts-Galbraith, R.H.6
Gould, K.L.7
-
66
-
-
0035380584
-
Purification of poly-ubiquitinated proteins by S5a-affinity chromatography
-
Layfield R, Tooth D, Landon M, Dawson S, Mayer J, Alban A (2001) Purification of poly-ubiquitinated proteins by S5a-affinity chromatography. Proteomics 1:773-777 (Pubitemid 33696521)
-
(2001)
Proteomics
, vol.1
, Issue.6
, pp. 773-777
-
-
Layfield, R.1
Tooth, D.2
Landon, M.3
Dawson, S.4
Mayer, J.5
Alban, A.6
-
67
-
-
77449155637
-
The multiple levels of regulation by p53 ubiquitination
-
Lee JT, Gu W (2010) The multiple levels of regulation by p53 ubiquitination. Cell Death Differ 17:86-92
-
(2010)
Cell Death Differ
, vol.17
, pp. 86-92
-
-
Lee, J.T.1
Gu, W.2
-
68
-
-
79955470830
-
Trimming of ubiquitin chains by proteasome-associated deubiquitinating enzymes
-
Lee MJ, Lee BH, Hanna J, King RW, and Finley D (2010) Trimming of ubiquitin chains by proteasome-associated deubiquitinating enzymes. Mol Cell Proteomics 10, R110.003871
-
(2010)
Mol Cell Proteomics
, vol.10
-
-
Lee, M.J.1
Lee, B.H.2
Hanna, J.3
King, R.W.4
Finley, D.5
-
69
-
-
82355164206
-
Ubiquitin ligase substrate identification through quantitative proteomics at both the protein and peptide levels
-
Lee KA, Hammerle LP, Andrews PS, Stokes MP, Mustelin T, Silva JC, Black RA, Doedens JR (2011) Ubiquitin ligase substrate identification through quantitative proteomics at both the protein and peptide levels. J Biol Chem 286:41530-41538
-
(2011)
J Biol Chem
, vol.286
, pp. 41530-41538
-
-
Lee, K.A.1
Hammerle, L.P.2
Andrews, P.S.3
Stokes, M.P.4
Mustelin, T.5
Silva, J.C.6
Black, R.A.7
Doedens, J.R.8
-
70
-
-
77954821990
-
Commonly used tag combinations for tandem affinity purification
-
Li Y (2010) Commonly used tag combinations for tandem affinity purification. Biotechnol Appl Biochem 55:73-83
-
(2010)
Biotechnol Appl Biochem
, vol.55
, pp. 73-83
-
-
Li, Y.1
-
71
-
-
44949231368
-
Genome-wide and functional annotation of human E3 ubiquitin ligases identifies MULAN, a mitochondrial E3 that regulates the organelles dynamics and signaling
-
Li W, Bengtson MH, Ulbrich A, Matsuda A, Reddy VA, Orth A, Chanda SK, Batalov S, Joazeiro CA (2008) Genome-wide and functional annotation of human E3 ubiquitin ligases identifies MULAN, a mitochondrial E3 that regulates the organelles dynamics and signaling. PLoS ONE 3:e1487
-
(2008)
PLoS ONE
, vol.3
-
-
Li, W.1
Bengtson, M.H.2
Ulbrich, A.3
Matsuda, A.4
Reddy, V.A.5
Orth, A.6
Chanda, S.K.7
Batalov, S.8
Joazeiro, C.A.9
-
72
-
-
3242731195
-
A model for random sampling and estimation of relative protein abundance in shotgun proteomics
-
DOI 10.1021/ac0498563
-
Liu H, Sadygov RG, Yates JR 3rd (2004) A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal Chem 76:4193-4201 (Pubitemid 38943698)
-
(2004)
Analytical Chemistry
, vol.76
, Issue.14
, pp. 4193-4201
-
-
Liu, H.1
Sadygov, R.G.2
Yates III, J.R.3
-
73
-
-
84867041655
-
Integrative analysis of the ubiquitin proteome isolated using tandem ubiquitin binding entities (TUBEs)
-
Dec 10. 2011[Epub ahead of print]
-
Lopitz-Otsoa F, Rodriguez-Suarez E, Aillet F, Casado-Vela J, Lang V, Matthiesen R, Elortza F, and Rodriguez MS (2011) Integrative analysis of the ubiquitin proteome isolated using Tandem Ubiquitin Binding Entities (TUBEs). J proteomics 2011 Dec 10. [Epub ahead of print]
-
(2011)
J Proteomics
-
-
Lopitz-Otsoa, F.1
Rodriguez-Suarez, E.2
Aillet, F.3
Casado-Vela, J.4
Lang, V.5
Matthiesen, R.6
Elortza, F.7
Rodriguez, M.S.8
-
74
-
-
34247342702
-
Multidimensional protein identification technology (Mud(PIT) analysis of ubiquitinated proteins in plants
-
DOI 10.1074/mcp.M600408-MCP200
-
Maor R, Jones A, Nuhse TS, Studholme DJ, Peck SC, Shirasu K (2007) Multidimensional protein identification technology (MudPIT) analysis of ubiquitinated proteins in plants. Mol Cell Proteomics 6:601-610 (Pubitemid 46630093)
-
(2007)
Molecular and Cellular Proteomics
, vol.6
, Issue.4
, pp. 601-610
-
-
Maor, R.1
Jones, A.2
Nuhse, T.S.3
Studholme, D.J.4
Peck, S.C.5
Shirasu, K.6
-
75
-
-
0037161303
-
Direct identification of a G protein ubiquitination site by mass spectrometry
-
DOI 10.1021/bi015940q
-
Marotti LA Jr, Newitt R, Wang Y, Aebersold R, Dohlman HG (2002) Direct identification of a G protein ubiquitination site by mass spectrometry. Biochemistry 41:5067-5074 (Pubitemid 34411660)
-
(2002)
Biochemistry
, vol.41
, Issue.16
, pp. 5067-5074
-
-
Marotti Jr., L.A.1
Newitt, R.2
Wang, Y.3
Aebersold, R.4
Dohlman, H.G.5
-
76
-
-
27744500428
-
Large-scale analysis of the human ubiquitin-related proteome
-
DOI 10.1002/pmic.200401280
-
Matsumoto M, Hatakeyama S, Oyamada K, Oda Y, Nishimura T, Nakayama KI (2005) Large-scale analysis of the human ubiquitin-related proteome. Proteomics 5:4145-4151 (Pubitemid 41626082)
-
(2005)
Proteomics
, vol.5
, Issue.16
, pp. 4145-4151
-
-
Matsumoto, M.1
Hatakeyama, S.2
Oyamada, K.3
Oda, Y.4
Nishimura, T.5
Nakayama, K.I.6
-
77
-
-
77955516435
-
K11- linked polyubiquitination in cell cycle control revealed by a K11 linkage-specific antibody
-
Matsumoto ML, Wickliffe KE, Dong KC, Yu C, Bosanac I, Bustos D, Phu L, Kirkpatrick DS, Hymowitz SG, Rape M et al (2010) K11- linked polyubiquitination in cell cycle control revealed by a K11 linkage-specific antibody. Mol Cell 39:477-484
-
(2010)
Mol Cell
, vol.39
, pp. 477-484
-
-
Matsumoto, M.L.1
Wickliffe, K.E.2
Dong, K.C.3
Yu, C.4
Bosanac, I.5
Bustos, D.6
Phu, L.7
Kirkpatrick, D.S.8
Hymowitz, S.G.9
Rape, M.10
-
78
-
-
20444384069
-
Analysis of polybiquitin conjugates reveals that the Rpn10 substrate receptor contributes to the turnover of multiple proteasome targets
-
DOI 10.1074/mcp.M400220-MCP200
-
Mayor T, Lipford JR, Graumann J, Smith GT, Deshaies RJ (2005) Analysis of polyubiquitin conjugates reveals that the Rpn10 substrate receptor contributes to the turnover of multiple proteasome targets. Mol Cell Proteomics 4:741-751 (Pubitemid 40873003)
-
(2005)
Molecular and Cellular Proteomics
, vol.4
, Issue.6
, pp. 741-751
-
-
Mayor, T.1
Lipford, J.R.2
Graumann, J.3
Smith, G.T.4
Deshaies, R.J.5
-
79
-
-
36749080327
-
Quantitative profiling of ubiquitylated proteins reveals proteasome substrates and the substrate repertoire influenced by the Rpn10 receptor pathway
-
DOI 10.1074/mcp.M700264-MCP200
-
Mayor T, Graumann J, Bryan J, MacCoss MJ, Deshaies RJ (2007) Quantitative profiling of ubiquitylated proteins reveals proteasome substrates and the substrate repertoire influenced by the Rpn10 receptor pathway. Mol Cell Proteomics 6:1885-1895 (Pubitemid 350201866)
-
(2007)
Molecular and Cellular Proteomics
, vol.6
, Issue.11
, pp. 1885-1895
-
-
Mayor, T.1
Graumann, J.2
Bryan, J.3
MacCoss, M.J.4
Deshaies, R.J.5
-
80
-
-
55949136614
-
Quantitative analysis of global ubiquitination in HeLa cells by mass spectrometry
-
Meierhofer D, Wang X, Huang L, Kaiser P (2008) Quantitative analysis of global ubiquitination in HeLa cells by mass spectrometry. J Proteome Res 7:4566-4576
-
(2008)
J Proteome Res
, vol.7
, pp. 4566-4576
-
-
Meierhofer, D.1
Wang, X.2
Huang, L.3
Kaiser, P.4
-
81
-
-
54749158155
-
Multidimensional LC separations in shotgun proteomics
-
Motoyama A, Yates JR 3rd (2008) Multidimensional LC separations in shotgun proteomics. Anal Chem 80:7187-7193
-
(2008)
Anal Chem
, vol.80
, pp. 7187-7193
-
-
Motoyama, A.1
Yates Iii, J.R.2
-
82
-
-
33846471122
-
Proteasome-independent functions of ubiquitin in endocytosis and signaling
-
DOI 10.1126/science.1127085
-
Mukhopadhyay D, Riezman H (2007) Proteasome-independent functions of ubiquitin in endocytosis and signaling. Science 315:201-205 (Pubitemid 46166358)
-
(2007)
Science
, vol.315
, Issue.5809
, pp. 201-205
-
-
Mukhopadhyay, D.1
Riezman, H.2
-
83
-
-
50449103533
-
Multiple polymorphisms in the TNFAIP3 region are independently associated with systemic lupus erythematosus
-
Musone SL, Taylor KE, Lu TT, Nititham J, Ferreira RC, Ortmann W, Shifrin N, Petri MA, Kamboh MI, Manzi S et al (2008) Multiple polymorphisms in the TNFAIP3 region are independently associated with systemic lupus erythematosus. Nat Genet 40:1062-1064
-
(2008)
Nat Genet
, vol.40
, pp. 1062-1064
-
-
Musone, S.L.1
Taylor, K.E.2
Lu, T.T.3
Nititham, J.4
Ferreira, R.C.5
Ortmann, W.6
Shifrin, N.7
Petri, M.A.8
Kamboh, M.I.9
Manzi, S.10
-
84
-
-
84857991691
-
Systems-wide perturbation analysis with near complete coverage of the yeast proteome by singleshot UHPLC runs on a bench-top Orbitrap
-
Oct 20. 2011 [Epub ahead of print]
-
Nagaraj N, Kulak NA, Cox J, Neuhaus N, Mayr K, Hoerning O, Vorm O, and Mann M (2011a) Systems-wide perturbation analysis with near complete coverage of the yeast proteome by singleshot UHPLC runs on a bench-top Orbitrap. Mol Cell Proteomics 2011 Oct 20. [Epub ahead of print]
-
(2011)
Mol Cell Proteomics
-
-
Nagaraj, N.1
Kulak, N.A.2
Cox, J.3
Neuhaus, N.4
Mayr, K.5
Hoerning, O.6
Vorm, O.7
Mann, M.8
-
85
-
-
80855128254
-
Deep proteome and transcriptome mapping of a human cancer cell line
-
Nagaraj N, Wisniewski JR, Geiger T, Cox J, Kircher M, Kelso J, Paabo S, Mann M (2011b) Deep proteome and transcriptome mapping of a human cancer cell line. Mol Syst Biol 7:548
-
(2011)
Mol Syst Biol
, vol.7
, pp. 548
-
-
Nagaraj, N.1
Wisniewski, J.R.2
Geiger, T.3
Cox, J.4
Kircher, M.5
Kelso, J.6
Paabo, S.7
Mann, M.8
-
86
-
-
77955867565
-
Non-canonical inhibition of DNA damage-dependent ubiquitination by OTUB1
-
Nakada S, Tai I, Panier S, Al-Hakim A, Iemura S, Juang YC, ODonnell L, Kumakubo A, Munro M, Sicheri F et al (2010) Non-canonical inhibition of DNA damage-dependent ubiquitination by OTUB1. Nature 466:941-946
-
(2010)
Nature
, vol.466
, pp. 941-946
-
-
Nakada, S.1
Tai, I.2
Panier, S.3
Al-Hakim, A.4
Iemura, S.5
Juang, Y.C.6
Odonnell, L.7
Kumakubo, A.8
Munro, M.9
Sicheri, F.10
-
87
-
-
49549117842
-
Ubiquitin chain editing revealed by polyubiquitin linkagespecific antibodies
-
Newton K, Matsumoto ML, Wertz IE, Kirkpatrick DS, Lill JR, Tan J, Dugger D, Gordon N, Sidhu SS, Fellouse FA et al (2008) Ubiquitin chain editing revealed by polyubiquitin linkagespecific antibodies. Cell 134:668-678
-
(2008)
Cell
, vol.134
, pp. 668-678
-
-
Newton, K.1
Matsumoto, M.L.2
Wertz, I.E.3
Kirkpatrick, D.S.4
Lill, J.R.5
Tan, J.6
Dugger, D.7
Gordon, N.8
Sidhu, S.S.9
Fellouse, F.A.10
-
88
-
-
44449108277
-
Iodoacetamide-induced artifact mimics ubiquitination in mass spectrometry
-
DOI 10.1038/nmeth0608-459, PII NMETH0608-459
-
Nielsen ML, Vermeulen M, Bonaldi T, Cox J, Moroder L, Mann M (2008) Iodoacetamide-induced artifact mimics ubiquitination in mass spectrometry. Nat Methods 5:459-460 (Pubitemid 351761746)
-
(2008)
Nature Methods
, vol.5
, Issue.6
, pp. 459-460
-
-
Nielsen, M.L.1
Vermeulen, M.2
Bonaldi, T.3
Cox, J.4
Moroder, L.5
Mann, M.6
-
89
-
-
28344456279
-
A genomic and functional inventory of deubiquitinating enzymes
-
DOI 10.1016/j.cell.2005.11.007, PII S0092867405011694
-
Nijman SM, Luna-Vargas MP, Velds A, Brummelkamp TR, Dirac AM, Sixma TK, Bernards R (2005) A genomic and functional inventory of deubiquitinating enzymes. Cell 123:773-786 (Pubitemid 41721026)
-
(2005)
Cell
, vol.123
, Issue.5
, pp. 773-786
-
-
Nijman, S.M.B.1
Luna-Vargas, M.P.A.2
Velds, A.3
Brummelkamp, T.R.4
Dirac, A.M.G.5
Sixma, T.K.6
Bernards, R.7
-
90
-
-
34548336772
-
Higher-energy C-trap dissociation for peptide modification analysis
-
DOI 10.1038/nmeth1060, PII NMETH1060
-
Olsen JV, Macek B, Lange O, Makarov A, Horning S, Mann M (2007) Higher-energy C-trap dissociation for peptide modification analysis. Nat Methods 4:709-712 (Pubitemid 47338163)
-
(2007)
Nature Methods
, vol.4
, Issue.9
, pp. 709-712
-
-
Olsen, J.V.1
Macek, B.2
Lange, O.3
Makarov, A.4
Horning, S.5
Mann, M.6
-
91
-
-
75149144996
-
A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed
-
Olsen JV, Schwartz JC, Griep-Raming J, Nielsen ML, Damoc E, Denisov E, Lange O, Remes P, Taylor D, Splendore M et al (2009) A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed. Mol Cell Proteomics 8: 2759-2769
-
(2009)
Mol Cell Proteomics
, vol.8
, pp. 2759-2769
-
-
Olsen, J.V.1
Schwartz, J.C.2
Griep-Raming, J.3
Nielsen, M.L.4
Damoc, E.5
Denisov, E.6
Lange, O.7
Remes, P.8
Taylor, D.9
Splendore, M.10
-
92
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong SE, Blagoev B, Kratchmarova I, Kristensen DB, Steen H, Pandey A, Mann M (2002) Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics 1:376-386
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
Steen, H.5
Pandey, A.6
Mann, M.7
-
93
-
-
42049091467
-
Evaluation of proteomic strategies for analyzing ubiquitinated proteins
-
Peng J (2008) Evaluation of proteomic strategies for analyzing ubiquitinated proteins. BMB Rep 41:177-183 (Pubitemid 351518989)
-
(2008)
Journal of Biochemistry and Molecular Biology
, vol.41
, Issue.3
, pp. 177-183
-
-
Peng, J.1
-
94
-
-
0034757770
-
Proteomics: The move to mixtures
-
DOI 10.1002/jms.229
-
Peng J, Gygi SP (2001) Proteomics: the move to mixtures. J Mass Spectrom 36:1083-1091 (Pubitemid 33040761)
-
(2001)
Journal of Mass Spectrometry
, vol.36
, Issue.10
, pp. 1083-1091
-
-
Peng, J.1
Gygi, S.P.2
-
95
-
-
0041706156
-
A proteomics approach to understanding protein ubiquitination
-
DOI 10.1038/nbt849
-
Peng J, Schwartz D, Elias JE, Thoreen CC, Cheng D, Marsischky G, Roelofs J, Finley D, Gygi SP (2003) A proteomics approach to understanding protein ubiquitination. Nat Biotechnol 21:921-926 (Pubitemid 36936199)
-
(2003)
Nature Biotechnology
, vol.21
, Issue.8
, pp. 921-926
-
-
Peng, J.1
Schwartz, D.2
Elias, J.E.3
Thoreen, C.C.4
Cheng, D.5
Marsischky, G.6
Roelofs, J.7
Finley, D.8
Gygi, S.P.9
-
96
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins DN, Pappin DJ, Creasy DM, Cottrell JS (1999) Probabilitybased protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20:3551-3567 (Pubitemid 30007252)
-
(1999)
Electrophoresis
, vol.20
, Issue.18
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.C.2
Creasy, D.M.3
Cottrell, J.S.4
-
97
-
-
79955763306
-
Improved quantitative mass spectrometry methods for characterizing complex ubiquitin signals
-
Phu L, Izrael-Tomasevic A, Matsumoto ML, Bustos DJ, Dynek JN, Fedorova AV, Bakalarski CE, Arnott D, Deshayes K, Dixit VM et al (2010) Improved quantitative mass spectrometry methods for characterizing complex ubiquitin signals. Mol Cell Proteomics 10, M110.003756
-
(2010)
Mol Cell Proteomics
, vol.10
-
-
Phu, L.1
Izrael-Tomasevic, A.2
Matsumoto, M.L.3
Bustos, D.J.4
Dynek, J.N.5
Fedorova, A.V.6
Bakalarski, C.E.7
Arnott, D.8
Deshayes, K.9
Dixit, V.M.10
-
98
-
-
8844237615
-
Polyubiquitin chains: Polymeric protein signals
-
DOI 10.1016/j.cbpa.2004.09.009, PII S1367593104001413
-
Pickart CM, Fushman D (2004) Polyubiquitin chains: polymeric protein signals. Curr Opin Chem Biol 8:610-616 (Pubitemid 39535722)
-
(2004)
Current Opinion in Chemical Biology
, vol.8
, Issue.6
, pp. 610-616
-
-
Pickart, C.M.1
Fushman, D.2
-
99
-
-
0034841844
-
The tandem affinity purification (TAP) method: A general procedure of protein complex purification
-
DOI 10.1006/meth.2001.1183
-
Puig O, Caspary F, Rigaut G, Rutz B, Bouveret E, Bragado-Nilsson E, Wilm M, Seraphin B (2001) The tandem affinity purification (TAP) method: a general procedure of protein complex purification. Methods 24:218-229 (Pubitemid 32846428)
-
(2001)
Methods
, vol.24
, Issue.3
, pp. 218-229
-
-
Puig, O.1
Caspary, F.2
Rigaut, G.3
Rutz, B.4
Bouveret, E.5
Bragado-Nilsson, E.6
Wilm, M.7
Seraphin, B.8
-
100
-
-
14344250874
-
Informatics platform for global proteomic profiling and biomarker discovery using liquid chromatography-tandem mass spectrometry
-
DOI 10.1074/mcp.M400061-MCP200
-
Radulovic D, Jelveh S, Ryu S, Hamilton TG, Foss E, Mao Y, Emili A (2004) Informatics platform for global proteomic profiling and biomarker discovery using liquid chromatography-tandem mass spectrometry. Mol Cell Proteomics 3:984-997 (Pubitemid 40361233)
-
(2004)
Molecular and Cellular Proteomics
, vol.3
, Issue.10
, pp. 984-997
-
-
Radulovic, D.1
Jelveh, S.2
Ryu, S.3
Hamilton, T.G.4
Foss, E.5
Mao, Y.6
Emili, A.7
-
101
-
-
62549155321
-
Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation
-
Rahighi S, Ikeda F, Kawasaki M, Akutsu M, Suzuki N, Kato R, Kensche T, Uejima T, Bloor S, Komander D et al (2009) Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation. Cell 136:1098-1109
-
(2009)
Cell
, vol.136
, pp. 1098-1109
-
-
Rahighi, S.1
Ikeda, F.2
Kawasaki, M.3
Akutsu, M.4
Suzuki, N.5
Kato, R.6
Kensche, T.7
Uejima, T.8
Bloor, S.9
Komander, D.10
-
102
-
-
67650620318
-
Regulation and cellular roles of ubiquitin-specific deubiquitinating enzymes
-
Reyes-Turcu FE, Ventii KH, Wilkinson KD (2009) Regulation and cellular roles of ubiquitin-specific deubiquitinating enzymes. Annu Rev Biochem 78:363-397
-
(2009)
Annu Rev Biochem
, vol.78
, pp. 363-397
-
-
Reyes-Turcu, F.E.1
Ventii, K.H.2
Wilkinson, K.D.3
-
103
-
-
33747797328
-
Real and imaginary artefacts in proteome analysis via two-dimensional maps
-
DOI 10.1016/j.jchromb.2006.02.022, PII S1570023206001188, Analysis of Proteins, Peptides and Glycanes by Capillary (Electromigration) Techniques
-
Righetti PG (2006) Real and imaginary artefacts in proteome analysis via two-dimensional maps. J Chromatogr B Analyt Technol Biomed Life Sci 841:14-22 (Pubitemid 44279544)
-
(2006)
Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences
, vol.841
, Issue.1-2
, pp. 14-22
-
-
Righetti, P.G.1
-
104
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross PL, Huang YN, Marchese JN, Williamson B, Parker K, Hattan S, Khainovski N, Pillai S, Dey S, Daniels S et al (2004) Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol Cell Proteomics 3:1154-1169
-
(2004)
Mol Cell Proteomics
, vol.3
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
Williamson, B.4
Parker, K.5
Hattan, S.6
Khainovski, N.7
Pillai, S.8
Dey, S.9
Daniels, S.10
-
105
-
-
0016864302
-
Molecular conservation of 74 amino acid sequence of ubiquitin between cattle and man
-
Schlesinger DH, Goldstein G (1975) Molecular conservation of 74 amino acid sequence of ubiquitin between cattle and man. Nature 255:42304
-
(1975)
Nature
, vol.255
, pp. 42304
-
-
Schlesinger, D.H.1
Goldstein, G.2
-
106
-
-
0016798328
-
The complete amino acid sequence of ubiquitin, an adenylate cyclase stimulating polypeptide probably universal in living cells
-
Schlesinger DH, Goldstein G, Niall HD (1975) The complete amino acid sequence of ubiquitin, an adenylate cyclase stimulating polypeptide probably universal in living cells. Biochemistry 14:2214-2218
-
(1975)
Biochemistry
, vol.14
, pp. 2214-2218
-
-
Schlesinger, D.H.1
Goldstein, G.2
Niall, H.D.3
-
108
-
-
44949142293
-
Systematic approach for validating the ubiquitinated proteome
-
DOI 10.1021/ac702516a
-
Seyfried NT, Xu P, Duong DM, Cheng D, Hanfelt J, Peng J (2008) Systematic approach for validating the ubiquitinated proteome. Anal Chem 80:4161-4169 (Pubitemid 351812770)
-
(2008)
Analytical Chemistry
, vol.80
, Issue.11
, pp. 4161-4169
-
-
Seyfried, N.T.1
Xu, P.2
Duong, D.M.3
Cheng, D.4
Hanfelt, J.5
Peng, J.6
-
109
-
-
79955754344
-
A data set of human endogenous protein ubiquitination sites
-
M110002089
-
Shi Y, Chan DW, Jung SY, Malovannaya A, Wang Y, and Qin J (2011a) A data set of human endogenous protein ubiquitination sites. Mol Cell Proteomics 10, M110 002089
-
(2011)
Mol Cell Proteomics
, vol.10
-
-
Shi, Y.1
Chan, D.W.2
Jung, S.Y.3
Malovannaya, A.4
Wang, Y.5
Qin, J.6
-
111
-
-
80655142311
-
Quantitative proteomic identification of the BRCA1 ubiquitination substrates
-
Song M, Hakala K, Weintraub ST, Shiio Y (2011) Quantitative proteomic identification of the BRCA1 ubiquitination substrates. J Proteome Res 10:5191-5198
-
(2011)
J Proteome Res
, vol.10
, pp. 5191-5198
-
-
Song, M.1
Hakala, K.2
Weintraub, S.T.3
Shiio, Y.4
-
112
-
-
67649634849
-
Defining the human deubiquitinating enzyme interaction landscape
-
Sowa ME, Bennett EJ, Gygi SP, Harper JW (2009) Defining the human deubiquitinating enzyme interaction landscape. Cell 138:389-403
-
(2009)
Cell
, vol.138
, pp. 389-403
-
-
Sowa, M.E.1
Bennett, E.J.2
Gygi, S.P.3
Harper, J.W.4
-
113
-
-
84867061411
-
Sites of ubiquitin attachment in Saccharomyces cerevisiae
-
[Epub ahead of print]
-
Starita LM, Lo RS, Eng JK, von Haller PD, and Fields S (2011) Sites of ubiquitin attachment in Saccharomyces cerevisiae. Proteomics 2011 Nov 22 [Epub ahead of print]
-
(2011)
Proteomics 2011 Nov
, vol.22
-
-
Starita, L.M.1
Lo, R.S.2
Eng, J.K.3
Von Haller, P.D.4
Fields, S.5
-
114
-
-
4444335470
-
The abcs (and xyzs) of peptide sequencing
-
Steen H, Mann M (2004) The abcs (and xyzs) of peptide sequencing. Nat Rev Mol Cell Biol 5:699-711
-
(2004)
Nat Rev Mol Cell Biol
, vol.5
, pp. 699-711
-
-
Steen, H.1
Mann, M.2
-
116
-
-
12444345515
-
Tandem mass tags: A novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS
-
DOI 10.1021/ac0262560
-
Thompson A, Schafer J, Kuhn K, Kienle S, Schwarz J, Schmidt G, Neumann T, Johnstone R, Mohammed AK, Hamon C (2003) Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS. Anal Chem 75:1895-1904 (Pubitemid 36438013)
-
(2003)
Analytical Chemistry
, vol.75
, Issue.8
, pp. 1895-1904
-
-
Thompson, A.1
Schafer, J.2
Kuhn, K.3
Kienle, S.4
Schwarz, J.5
Schmidt, G.6
Neumann, T.7
Hamon, C.8
-
117
-
-
1342304089
-
63-linked di-ubiquitin chain provides clues to functional diversity of polyubiquitin signaling
-
DOI 10.1074/jbc.M309184200
-
Varadan R, Assfalg M, Haririnia A, Raasi S, Pickart C, Fushman D (2004) Solution conformation of Lys63-linked di-ubiqutin chain provides clues to functional diversity of polyubiquitin signaling. J Biol Chem 279:7055-7063 (Pubitemid 38248851)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.8
, pp. 7055-7063
-
-
Varadan, R.1
Assfalg, M.2
Haririnia, A.3
Raasi, S.4
Pickart, C.5
Fushman, D.6
-
118
-
-
29144505073
-
Proteomic analysis of ubiquitinated proteins from human MCF-7 breast cancer cells by immunoaffinity purification and mass spectrometry
-
DOI 10.1021/pr050265i
-
Vasilescu J, Smith JC, Ethier M, Figeys D (2005) Proteomic analysis of ubiquitinated proteins from human MCF-7 breast cancer cells by immunoaffinity purification and mass spectrometry. J Proteome Res 4:2192-2200 (Pubitemid 41814287)
-
(2005)
Journal of Proteome Research
, vol.4
, Issue.6
, pp. 2192-2200
-
-
Vasilescu, J.1
Smith, J.C.2
Ethier, M.3
Figeys, D.4
-
119
-
-
77956903406
-
Engineered diubiquitin synthesis reveals Lys29-isopeptide specificity of an OTU deubiquitinase
-
Virdee S, Ye Y, Nguyen DP, Komander D, Chin JW (2010) Engineered diubiquitin synthesis reveals Lys29-isopeptide specificity of an OTU deubiquitinase. Nat Chem Biol 6:750-757
-
(2010)
Nat Chem Biol
, vol.6
, pp. 750-757
-
-
Virdee, S.1
Ye, Y.2
Nguyen, D.P.3
Komander, D.4
Chin, J.W.5
-
120
-
-
33144469102
-
The proteasome and proteasome inhibitors in cancer therapy
-
DOI 10.1146/annurev.pharmtox.46.120604.141300
-
Voorhees PM, Orlowski RZ (2006) The proteasome and proteasome inhibitors in cancer therapy. Annu Rev Pharmacol Toxicol 46:189-213 (Pubitemid 43271188)
-
(2006)
Annual Review of Pharmacology and Toxicology
, vol.46
, pp. 189-213
-
-
Voorhees, P.M.1
Orlowski, R.Z.2
-
121
-
-
80054033461
-
A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles
-
M111
-
Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, and Choudhary C (2011) A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. Mol Cell Proteomics 10, M111 013284
-
(2011)
Mol Cell Proteomics
, vol.10
, pp. 013284
-
-
Wagner, S.A.1
Beli, P.2
Weinert, B.T.3
Nielsen, M.L.4
Cox, J.5
Mann, M.6
Choudhary, C.7
-
122
-
-
34548759123
-
Emergence of a DNA-damage response network consisting of Fanconi anaemia and BRCA proteins
-
DOI 10.1038/nrg2159, PII NRG2159
-
Wang W (2007) Emergence of a DNA-damage response network consisting of Fanconi anaemia and BRCA proteins. Nat Rev Genet 8:735-748 (Pubitemid 47429206)
-
(2007)
Nature Reviews Genetics
, vol.8
, Issue.10
, pp. 735-748
-
-
Wang, W.1
-
123
-
-
10744233766
-
Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards
-
DOI 10.1021/ac026468x
-
Wang W, Zhou H, Lin H, Roy S, Shaler TA, Hill LR, Norton S, Kumar P, Anderle M, Becker CH (2003) Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards. Anal Chem 75:4818-4826 (Pubitemid 37139783)
-
(2003)
Analytical Chemistry
, vol.75
, Issue.18
, pp. 4818-4826
-
-
Wang, W.1
Zhou, H.2
Lin, H.3
Roy, S.4
Shaler, T.A.5
Hill, L.R.6
Norton, S.7
Kumar, P.8
Anderle, M.9
Becker, C.H.10
-
124
-
-
33646122226
-
Molecular determinants of polyubiquitin linkage selection by an HECT ubiquitin ligase
-
Wang M, Cheng D, Peng J, Pickart CM (2006) Molecular determinants of polyubiquitin linkage selection by an HECT ubiquitin ligase. EMBO J 25:1710-1719
-
(2006)
EMBO J
, vol.25
, pp. 1710-1719
-
-
Wang, M.1
Cheng, D.2
Peng, J.3
Pickart, C.M.4
-
125
-
-
35448962393
-
Proteomics of proteasome complexes and ubiquitinated proteins
-
DOI 10.1586/14789450.4.5.649
-
Wang X, Guerrero C, Kaiser P, Huang L (2007) Proteomics of proteasome complexes and ubiquitinated proteins. Expert Rev Proteomics 4:649-665 (Pubitemid 47623434)
-
(2007)
Expert Review of Proteomics
, vol.4
, Issue.5
, pp. 649-665
-
-
Wang, X.1
Guerrero, C.2
Kaiser, P.3
Huang, L.4
-
126
-
-
63049138322
-
NBA1, a new player in the Brca1 A complex, is required for DNA damage resistance and checkpoint control
-
Wang B, Hurov K, Hofmann K, Elledge SJ (2009) NBA1, a new player in the Brca1 A complex, is required for DNA damage resistance and checkpoint control. Genes Dev 23:729-739
-
(2009)
Genes Dev
, vol.23
, pp. 729-739
-
-
Wang, B.1
Hurov, K.2
Hofmann, K.3
Elledge, S.J.4
-
127
-
-
13944257472
-
Electrospray ionization tandem mass spectrometry of model peptides reveals diagnostic fragment ions for protein ubiquitination
-
DOI 10.1002/rcm.1798
-
Warren MR, Parker CE, Mocanu V, Klapper D, Borchers CH (2005) Electrospray ionization tandem mass spectrometry of model peptides reveals diagnostic fragment ions for protein ubiquitination. Rapid Commun Mass Spectrom 19:429-437 (Pubitemid 40269526)
-
(2005)
Rapid Communications in Mass Spectrometry
, vol.19
, Issue.4
, pp. 429-437
-
-
Esteban Warren, M.R.1
Parker, C.E.2
Mocanu, V.3
Klapper, D.4
Borchers, C.H.5
-
128
-
-
0037328263
-
Hyperubiquitination of proteins in dilated cardiomyopathy
-
DOI 10.1002/pmic.200390029
-
Weekes J, Morrison K, Mullen A, Wait R, Barton P, Dunn MJ (2003) Hyperubiquitination of proteins in dilated cardiomyopathy. Proteomics 3:208-216 (Pubitemid 36254603)
-
(2003)
Proteomics
, vol.3
, Issue.2
, pp. 208-216
-
-
Weekes, J.1
Morrison, K.2
Mullen, A.3
Wait, R.4
Barton, P.5
Dunn, M.J.6
-
129
-
-
38549086019
-
FBW7 ubiquitin ligase: A tumour suppressor at the crossroads of cell division, growth and differentiation
-
DOI 10.1038/nrc2290, PII NRC2290
-
Welcker M, Clurman BE (2008) FBW7 ubiquitin ligase: a tumour suppressor at the crossroads of cell division, growth and differentiation. Nat Rev Cancer 8:83-93 (Pubitemid 351161321)
-
(2008)
Nature Reviews Cancer
, vol.8
, Issue.2
, pp. 83-93
-
-
Welcker, M.1
Clurman, B.E.2
-
130
-
-
0019174693
-
Ubiquitin is the ATP-dependent proteolysis factor I of rabbit reticulocytes
-
Wilkinson KD, Urban MK, Haas AL (1980) Ubiquitin is the ATPdependent proteolysis factor I of rabbit reticulocytes. J Biol Chem 255:7529-7532 (Pubitemid 11239455)
-
(1980)
Journal of Biological Chemistry
, vol.255
, Issue.16
, pp. 7529-7532
-
-
Wilkinson, K.D.1
Urban, M.K.2
Haas, A.L.3
-
131
-
-
33749253578
-
Dynamic profiling of the post-translational modifications and interaction partners of epidermal growth factor receptor signaling after stimulation by epidermal growth factor using Extended Range Proteomic Analysis (ERPA)
-
DOI 10.1074/mcp.M600105-MCP200
-
Wu SL, Kim J, Bandle RW, Liotta L, Petricoin E, Karger BL (2006) Dynamic profiling of the post-translational modifications and interaction partners of epidermal growth factor receptor signaling after stimulation by epidermal growth factor using Extended Range Proteomic Analysis (ERPA). Mol Cell Proteomics 5:1610-1627 (Pubitemid 44480389)
-
(2006)
Molecular and Cellular Proteomics
, vol.5
, Issue.9
, pp. 1610-1627
-
-
Wu, S.-L.1
Kim, J.2
Bandle, R.W.3
Liotta, L.4
Petricoin, E.5
Karger, B.L.6
-
132
-
-
84862907854
-
Whole-exome sequencing of neoplastic cysts of the pancreas reveals recurrent mutations in components of ubiquitindependent pathways
-
Wu J, Jiao Y, Dal Molin M, Maitra A, de Wilde RF, Wood LD, Eshleman JR, Goggins MG, Wolfgang CL, Canto MI et al (2011) Whole-exome sequencing of neoplastic cysts of the pancreas reveals recurrent mutations in components of ubiquitindependent pathways. Proc Natl Acad Sci USA 108:21188-21193
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 21188-21193
-
-
Wu, J.1
Jiao, Y.2
Dal Molin, M.3
Maitra, A.4
De Wilde, R.F.5
Wood, L.D.6
Eshleman, J.R.7
Goggins, M.G.8
Wolfgang, C.L.9
Canto, M.I.10
-
133
-
-
33845441117
-
Dissecting the ubiquitin pathway by mass spectrometry
-
DOI 10.1016/j.bbapap.2006.09.004, PII S1570963906003098, Posttranslational Modifications in Proteomics
-
Xu P, Peng J (2006) Dissecting the ubiquitin pathway by mass spectrometry. Biochim Biophys Acta 1764:1940-1947 (Pubitemid 44895026)
-
(2006)
Biochimica et Biophysica Acta - Proteins and Proteomics
, vol.1764
, Issue.12
, pp. 1940-1947
-
-
Xu, P.1
Peng, J.2
-
134
-
-
42049105662
-
Characterization of polyubiquitin chain structure by middle-down mass spectrometry
-
DOI 10.1021/ac800016w
-
Xu P, Peng J (2008) Characterization of polyubiquitin chain structure by middle-down mass spectrometry. Anal Chem 80:3438-3444 (Pubitemid 351620732)
-
(2008)
Analytical Chemistry
, vol.80
, Issue.9
, pp. 3438-3444
-
-
Xu, P.1
Peng, J.2
-
135
-
-
33646164293
-
A proteomic strategy for quantifying polyubiquitin chain topologies
-
DOI 10.1560/1JVL-J4EE-FVW4-MXRE
-
Xu P, Cheng D, Duong DM, Rush J, Roelofs J, Finley D, Peng J (2006) A proteomic strategy for quantifying polyubiquitin chain topologies. Israel J Chem 46:171-182 (Pubitemid 44946495)
-
(2006)
Israel Journal of Chemistry
, vol.46
, Issue.2
, pp. 171-182
-
-
Xu, P.1
Cheng, D.2
Duong, D.M.3
Rush, J.4
Roelofs, J.5
Finley, D.6
Peng, J.7
-
136
-
-
70350015537
-
A ubiquitin replacement strategy in human cells reveals distinct mechanisms of IKK activation by TNFalpha and IL-1beta
-
Xu M, Skaug B, Zeng W, Chen ZJ (2009a) A ubiquitin replacement strategy in human cells reveals distinct mechanisms of IKK activation by TNFalpha and IL-1beta. Mol Cell 36:302-314
-
(2009)
Mol Cell
, vol.36
, pp. 302-314
-
-
Xu, M.1
Skaug, B.2
Zeng, W.3
Chen, Z.J.4
-
137
-
-
68549127159
-
Systematical optimization of reverse-phase chromatography for shotgun proteomics
-
Xu P, Duong DM, Peng J (2009b) Systematical optimization of reverse-phase chromatography for shotgun proteomics. J Proteome Res 8:3944-3950
-
(2009)
J Proteome Res
, vol.8
, pp. 3944-3950
-
-
Xu, P.1
Duong, D.M.2
Peng, J.3
-
138
-
-
63049125531
-
Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation
-
Xu P, Duong DM, Seyfried NT, Cheng D, Xie Y, Robert J, Rush J, Hochstrasser M, Finley D, Peng J (2009c) Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation. Cell 137:133-145
-
(2009)
Cell
, vol.137
, pp. 133-145
-
-
Xu, P.1
Duong, D.M.2
Seyfried, N.T.3
Cheng, D.4
Xie, Y.5
Robert, J.6
Rush, J.7
Hochstrasser, M.8
Finley, D.9
Peng, J.10
-
139
-
-
78651225388
-
Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling
-
Xu G, Paige JS, Jaffrey SR (2010) Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling. Nat Biotechnol 28:868-873
-
(2010)
Nat Biotechnol
, vol.28
, pp. 868-873
-
-
Xu, G.1
Paige, J.S.2
Jaffrey, S.R.3
-
140
-
-
70349970658
-
Stable isotope labeling and label-free proteomics of Drosophila parkin null mutants
-
Xun Z, Kaufman TC, Clemmer DE (2009) Stable isotope labeling and label-free proteomics of Drosophila parkin null mutants. J Proteome Res 8:4500-4510
-
(2009)
J Proteome Res
, vol.8
, pp. 4500-4510
-
-
Xun, Z.1
Kaufman, T.C.2
Clemmer, D.E.3
-
141
-
-
33847033787
-
LC/MS characterization of undesired products formed during iodoacetamide derivatization of sulfhydryl groups of peptides
-
Yang Z, Attygalle AB (2007) LC/MS characterization of undesired products formed during iodoacetamide derivatization of sulfhydryl groups of peptides. J Mass Spectrom 42:233-243
-
(2007)
J Mass Spectrom
, vol.42
, pp. 233-243
-
-
Yang, Z.1
Attygalle, A.B.2
-
142
-
-
33847410541
-
Emerging roles for ubiquitin and protein degradation in neuronal function
-
DOI 10.1124/pr.59.1.4
-
Yi JJ, Ehlers MD (2007) Emerging roles for ubiquitin and protein degradation in neuronal function. Pharmacol Rev 59:14-39 (Pubitemid 46333994)
-
(2007)
Pharmacological Reviews
, vol.59
, Issue.1
, pp. 14-39
-
-
Yi, J.J.1
Ehlers, M.D.2
-
143
-
-
33750987637
-
Detecting differential and correlated protein expression in label-free shotgun proteomics
-
DOI 10.1021/pr0600273
-
Zhang B, VerBerkmoes NC, Langston MA, Uberbacher E, Hettich RL, Samatova NF (2006) Detecting differential and correlated protein expression in label-free shotgun proteomics. J Proteome Res 5:2909-2918 (Pubitemid 44749209)
-
(2006)
Journal of Proteome Research
, vol.5
, Issue.11
, pp. 2909-2918
-
-
Zhang, B.1
VerBerkmoes, N.C.2
Langston, M.A.3
Uberbacher, E.4
Hettich, R.L.5
Samatova, N.F.6
-
144
-
-
77952336245
-
Distinct consequences of posttranslational modification by linear versus K63-linked polyubiquitin chains
-
Zhao S, Ulrich HD (2010) Distinct consequences of posttranslational modification by linear versus K63-linked polyubiquitin chains. Proc Natl Acad Sci USA 107:7704-7709
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 7704-7709
-
-
Zhao, S.1
Ulrich, H.D.2
-
145
-
-
77957372670
-
Galectin-3 is a candidate biomarker for amyotrophic lateral sclerosis: Discovery by a proteomics approach
-
Zhou JY, Afjehi-Sadat L, Asress S, Duong DM, Cudkowicz M, Glass JD, Peng J (2010) Galectin-3 is a candidate biomarker for amyotrophic lateral sclerosis: discovery by a proteomics approach. J Proteome Res 9:5133-5141
-
(2010)
J Proteome Res
, vol.9
, pp. 5133-5141
-
-
Zhou, J.Y.1
Afjehi-Sadat, L.2
Asress, S.3
Duong, D.M.4
Cudkowicz, M.5
Glass, J.D.6
Peng, J.7
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