메뉴 건너뛰기




Volumn 36, Issue 5, 2008, Pages 823-827

Efficient approaches for characterizing ubiquitinated proteins

Author keywords

Histidine tag; Proteomics; Purification; Ubiquitin associated domain (UBA domain); Ubiquitin interacting motif (UIM); Ubiquitination

Indexed keywords

BIM PROTEIN; CYSTEINE PROTEINASE; HISTIDINE; POLYUBIQUITIN; PROTEIN P62;

EID: 53849121959     PISSN: 03005127     EISSN: None     Source Type: Journal    
DOI: 10.1042/BST0360823     Document Type: Conference Paper
Times cited : (34)

References (42)
  • 1
    • 0034602845 scopus 로고    scopus 로고
    • Recognition of the polyubiquitin proteolytic signal
    • Thrower, J.S., Hoffman, L., Rechsteiner, M. and Pickart, C.M. (2000) Recognition of the polyubiquitin proteolytic signal. EMBO J. 19, 94-102
    • (2000) EMBO J , vol.19 , pp. 94-102
    • Thrower, J.S.1    Hoffman, L.2    Rechsteiner, M.3    Pickart, C.M.4
  • 2
    • 2342477917 scopus 로고    scopus 로고
    • The novel functions of ubiquitination in signaling
    • Sun, L. and Chen, Z.J. (2004) The novel functions of ubiquitination in signaling. Curr. Opin. Cell Biol. 16, 119-126
    • (2004) Curr. Opin. Cell Biol , vol.16 , pp. 119-126
    • Sun, L.1    Chen, Z.J.2
  • 3
    • 33846471122 scopus 로고    scopus 로고
    • Proteasome-independent functions of ubiquitin in endocytosis and signaling
    • Mukhopadhyay, D. and Riezman, H. (2007) Proteasome-independent functions of ubiquitin in endocytosis and signaling. Science 315, 201-205
    • (2007) Science , vol.315 , pp. 201-205
    • Mukhopadhyay, D.1    Riezman, H.2
  • 4
    • 26944465404 scopus 로고    scopus 로고
    • Diverse polyubiquitin interaction properties of ubiquitin-associated domains
    • Raasi, S., Varadan, R., Fushman, D. and Pickart, C.M. (2005) Diverse polyubiquitin interaction properties of ubiquitin-associated domains. Nat. Struct. Mol. Biol. 12, 708-714
    • (2005) Nat. Struct. Mol. Biol , vol.12 , pp. 708-714
    • Raasi, S.1    Varadan, R.2    Fushman, D.3    Pickart, C.M.4
  • 5
    • 0032489524 scopus 로고    scopus 로고
    • Young, P., Deveraux, Q., Beal, R.E., Pickaft, C.M. and Rechsteiner, M. (1998) Characterization of two polyubiquitin binding sites in the 26 S protease subunit 5a. J. Biol. Chem. 273, 5461-S467
    • Young, P., Deveraux, Q., Beal, R.E., Pickaft, C.M. and Rechsteiner, M. (1998) Characterization of two polyubiquitin binding sites in the 26 S protease subunit 5a. J. Biol. Chem. 273, 5461-S467
  • 6
    • 33750555919 scopus 로고    scopus 로고
    • Ubiquitin-binding domains
    • Hurley, J.H., Lee, S. and Prag, G. (2006) Ubiquitin-binding domains. Biochem. J. 399, 361-372
    • (2006) Biochem. J , vol.399 , pp. 361-372
    • Hurley, J.H.1    Lee, S.2    Prag, G.3
  • 7
    • 33745977756 scopus 로고    scopus 로고
    • Proteasome inhibition induces reversible impairments in protein synthesis
    • Ding, Q., Dimayuga, E., Markesbery, W.R. and Keller, J.N. (2006) Proteasome inhibition induces reversible impairments in protein synthesis. FASEB J. 20, 1055-1063
    • (2006) FASEB J , vol.20 , pp. 1055-1063
    • Ding, Q.1    Dimayuga, E.2    Markesbery, W.R.3    Keller, J.N.4
  • 9
    • 0035899468 scopus 로고    scopus 로고
    • Different effects of p14ARF on the levels of ubiquitinated pS3 and Mdm2 in vivo
    • Xirodimas, D., Saville, M.K., Edling, C., Lane, D.P. and Lain, S. (2001) Different effects of p14ARF on the levels of ubiquitinated pS3 and Mdm2 in vivo. Oncogene 20, 4972-4983
    • (2001) Oncogene , vol.20 , pp. 4972-4983
    • Xirodimas, D.1    Saville, M.K.2    Edling, C.3    Lane, D.P.4    Lain, S.5
  • 10
    • 0036340096 scopus 로고    scopus 로고
    • Hypophosphorylation of Mdm2 augments p53 stability
    • Blattner, C., Hay, T., Meek, D.W. and Lane, D.P. (2002) Hypophosphorylation of Mdm2 augments p53 stability. Mol. Cell. Biol. 22, 6170-6182
    • (2002) Mol. Cell. Biol , vol.22 , pp. 6170-6182
    • Blattner, C.1    Hay, T.2    Meek, D.W.3    Lane, D.P.4
  • 13
    • 20044373693 scopus 로고    scopus 로고
    • Proteomic identification of ubiquitinated proteins from human cells expressing His-tagged ubiquitin
    • Kirkpatrick, D.S., Weldon, S.F., Tsaprailis, G., Liebler, D.C. and Gandolfi, A.J. (2005) Proteomic identification of ubiquitinated proteins from human cells expressing His-tagged ubiquitin. Proteomics 5, 2104-2111
    • (2005) Proteomics , vol.5 , pp. 2104-2111
    • Kirkpatrick, D.S.1    Weldon, S.F.2    Tsaprailis, G.3    Liebler, D.C.4    Gandolfi, A.J.5
  • 14
    • 33645703441 scopus 로고    scopus 로고
    • A tandem affinity tag for two-step purification under fully denaturing conditions: Application in ubiquitin profiling and protein complex identification combined with in vivo cross-linking
    • Tagwerker, C., Flick, K., Cui, M., Guerrero, C., Dou, Y., Auer, B., Baldi, P., Huang, L. and Kaiser, P. (2006) A tandem affinity tag for two-step purification under fully denaturing conditions: application in ubiquitin profiling and protein complex identification combined with in vivo cross-linking. Mol. Cell Proteomics 5, 737-748
    • (2006) Mol. Cell Proteomics , vol.5 , pp. 737-748
    • Tagwerker, C.1    Flick, K.2    Cui, M.3    Guerrero, C.4    Dou, Y.5    Auer, B.6    Baldi, P.7    Huang, L.8    Kaiser, P.9
  • 17
    • 39649120317 scopus 로고    scopus 로고
    • Affinity makes the difference: Nonselective interaction of the UBA domain of ubiquilin-1 with monomeric ubiquitin and polyubiquitin chains
    • Zhang, D., Raasi, S. and Fushman, D. (2008) Affinity makes the difference: nonselective interaction of the UBA domain of ubiquilin-1 with monomeric ubiquitin and polyubiquitin chains. J. Mol. Biol. 377, 162-180
    • (2008) J. Mol. Biol , vol.377 , pp. 162-180
    • Zhang, D.1    Raasi, S.2    Fushman, D.3
  • 18
    • 0242300114 scopus 로고    scopus 로고
    • DNA-repair protein hHR23a alters its protein structure upon binding proteasomal subunit S5a
    • Walters, K.J., Lech, P.J., Goh, A.M., Wang, Q. and Howley, P.M. (2003) DNA-repair protein hHR23a alters its protein structure upon binding proteasomal subunit S5a. Proc. Natl. Acad. Sci. U.S.A. 100, 12694-12699
    • (2003) Proc. Natl. Acad. Sci. U.S.A , vol.100 , pp. 12694-12699
    • Walters, K.J.1    Lech, P.J.2    Goh, A.M.3    Wang, Q.4    Howley, P.M.5
  • 21
    • 1942486364 scopus 로고    scopus 로고
    • Kaposi's sarcoma-associated herpesvirus K7 protein targets a ubiquitin-like/ubiquitin-associated domain-containing protein to promote protein degradation
    • Feng, P, Scott, C.W., Cho, N.H., Nakamura, H., Chung, Y.H., Monteiro, M.J. and Jung, J.U. (2004) Kaposi's sarcoma-associated herpesvirus K7 protein targets a ubiquitin-like/ubiquitin-associated domain-containing protein to promote protein degradation. Mol. Cell. Biol. 24, 3938-3948
    • (2004) Mol. Cell. Biol , vol.24 , pp. 3938-3948
    • Feng, P.1    Scott, C.W.2    Cho, N.H.3    Nakamura, H.4    Chung, Y.H.5    Monteiro, M.J.6    Jung, J.U.7
  • 22
    • 0037378613 scopus 로고    scopus 로고
    • Interaction with a ubiquitin-like protein enhances the ubiquitination and degradation of hepatitis C virus RNA-dependent RNA polymerase
    • Gao, L., Tu, H., Shi, S.T., Lee, K.J., Asanaka, M., Hwang, S.B. and Lai, M.M. (2003) Interaction with a ubiquitin-like protein enhances the ubiquitination and degradation of hepatitis C virus RNA-dependent RNA polymerase. J. Virol. 77, 4149-4159
    • (2003) J. Virol , vol.77 , pp. 4149-4159
    • Gao, L.1    Tu, H.2    Shi, S.T.3    Lee, K.J.4    Asanaka, M.5    Hwang, S.B.6    Lai, M.M.7
  • 23
    • 34447523329 scopus 로고    scopus 로고
    • Regulation of Pax3 by proteasomal degradation of monoubiquitinated protein in skeletal Muscle progenitors
    • Boutet, S.C., Disatnik, M.H., Chan, L.S., Iori, K. and Rando, T.A. (2007) Regulation of Pax3 by proteasomal degradation of monoubiquitinated protein in skeletal Muscle progenitors. Cell 130, 349-362
    • (2007) Cell , vol.130 , pp. 349-362
    • Boutet, S.C.1    Disatnik, M.H.2    Chan, L.S.3    Iori, K.4    Rando, T.A.5
  • 25
    • 33845764862 scopus 로고    scopus 로고
    • Ubiquitin receptor proteins hHR23a and hPLIC2 interact
    • Kang, Y., Zhang, N., Koepp, D.M. and Walters, K.J. (2007) Ubiquitin receptor proteins hHR23a and hPLIC2 interact. J. Mol. Biol. 365, 1093-1101
    • (2007) J. Mol. Biol , vol.365 , pp. 1093-1101
    • Kang, Y.1    Zhang, N.2    Koepp, D.M.3    Walters, K.J.4
  • 26
    • 41949134141 scopus 로고    scopus 로고
    • Ubiquitin recognition by the ubiquitin-associated domain of p62 involves a novel conformational switch
    • Long, J., Gallagher, T.R,, Cavey, J.R., Sheppard, P.W., Ralston, S.H., Layfield, R. and Searle, M.S. (2007) Ubiquitin recognition by the ubiquitin-associated domain of p62 involves a novel conformational switch. J. Biol. Chem. 283, 5427-5440
    • (2007) J. Biol. Chem , vol.283 , pp. 5427-5440
    • Long, J.1    Gallagher, T.R.2    Cavey, J.R.3    Sheppard, P.W.4    Ralston, S.H.5    Layfield, R.6    Searle, M.S.7
  • 27
    • 4444220680 scopus 로고    scopus 로고
    • Sequestosome 1/p62 is a polyubiquitin chain binding protein involved in ubiquitin proteasome degradation
    • Seibenhener, M.L., Babu, J.R., Geetha, T., Wong, H.C., Krishna, N.R. and Wooten, M.W. (2004) Sequestosome 1/p62 is a polyubiquitin chain binding protein involved in ubiquitin proteasome degradation. Mol. Cell. Biol. 24, 8055-8068
    • (2004) Mol. Cell. Biol , vol.24 , pp. 8055-8068
    • Seibenhener, M.L.1    Babu, J.R.2    Geetha, T.3    Wong, H.C.4    Krishna, N.R.5    Wooten, M.W.6
  • 28
    • 0346039256 scopus 로고    scopus 로고
    • A Method to identify p62's UBA domain interacting proteins
    • Pridgeon, J.W., Geetha, T. and Wooten, M.W. (2003) A Method to identify p62's UBA domain interacting proteins. Biol. Proced. online 5, 228-237
    • (2003) Biol. Proced. online , vol.5 , pp. 228-237
    • Pridgeon, J.W.1    Geetha, T.2    Wooten, M.W.3
  • 31
    • 33845507796 scopus 로고    scopus 로고
    • BCR ubiquitination controls BCR-mediated antigen processing and presentation
    • Drake, L., McGovern-Brindisi, E.M. and Drake, J.R. (2006) BCR ubiquitination controls BCR-mediated antigen processing and presentation. Blood 108, 4086-4093
    • (2006) Blood , vol.108 , pp. 4086-4093
    • Drake, L.1    McGovern-Brindisi, E.M.2    Drake, J.R.3
  • 32
    • 0141625301 scopus 로고    scopus 로고
    • Structural determinants for the binding of ubiquitin-like domains to the proleasome
    • Mueller, T.D. and Feigon, J. (2003) Structural determinants for the binding of ubiquitin-like domains to the proleasome - EMBO J. 22, 4634-4645
    • (2003) EMBO J , vol.22 , pp. 4634-4645
    • Mueller, T.D.1    Feigon, J.2
  • 34
    • 0035380584 scopus 로고    scopus 로고
    • Purification of poly-ubiquitinated proteins by S5a-affinity chromatography
    • Layfield, R., Tooth, D., Landon, M., Dawson, S., Mayer, J. and Alban, A. (2001) Purification of poly-ubiquitinated proteins by S5a-affinity chromatography. Proteomics 1, 773-777
    • (2001) Proteomics , vol.1 , pp. 773-777
    • Layfield, R.1    Tooth, D.2    Landon, M.3    Dawson, S.4    Mayer, J.5    Alban, A.6
  • 38
    • 0037374587 scopus 로고    scopus 로고
    • Activity level controls postsynaptic composition and signaling via the ubiquitin-proteasome system
    • Ehlers, M.D. (2003) Activity level controls postsynaptic composition and signaling via the ubiquitin-proteasome system, Nat. Neurosci. 6, 231-242
    • (2003) Nat. Neurosci , vol.6 , pp. 231-242
    • Ehlers, M.D.1
  • 39
    • 38949194974 scopus 로고    scopus 로고
    • inhibition of anthrax lethal toxin-induced cytolysis of RAW264.7 cells by celastrol
    • Chapelsky, S., Batty, S., Frost, M. and Mogridge, J. (2008) inhibition of anthrax lethal toxin-induced cytolysis of RAW264.7 cells by celastrol. PLoS ONE 3, e1421
    • (2008) PLoS ONE , vol.3
    • Chapelsky, S.1    Batty, S.2    Frost, M.3    Mogridge, J.4
  • 40
    • 34247342702 scopus 로고    scopus 로고
    • Multidimensional protein identification technology (MudPIT) analysis of ubiquitinated proteins in plants
    • Maor, R., Jones, A., Nuhse, T.S., Stucholme, D.J., Peck, S.C. and Shirasu, K. (2007) Multidimensional protein identification technology (MudPIT) analysis of ubiquitinated proteins in plants. Mol. Cell. Proteomics 6, 601-610
    • (2007) Mol. Cell. Proteomics , vol.6 , pp. 601-610
    • Maor, R.1    Jones, A.2    Nuhse, T.S.3    Stucholme, D.J.4    Peck, S.C.5    Shirasu, K.6
  • 41
    • 17144417404 scopus 로고    scopus 로고
    • Structure of S5a bound to monoubiquitin provides a model for polyubiquitin recognition
    • Wang, Q., Young, P. and Walters, K.J. (2005) Structure of S5a bound to monoubiquitin provides a model for polyubiquitin recognition. J. Mol. Biol. 348, 727-739
    • (2005) J. Mol. Biol , vol.348 , pp. 727-739
    • Wang, Q.1    Young, P.2    Walters, K.J.3
  • 42
    • 43049154531 scopus 로고    scopus 로고
    • Alternative UPS drug targets upstream the 26S proteasome
    • Hjerpe, R. and Rodríguez, M.S. (2008) Alternative UPS drug targets upstream the 26S proteasome. Int. J. Biochem. Cell Biol. 40, 1126-1140
    • (2008) Int. J. Biochem. Cell Biol , vol.40 , pp. 1126-1140
    • Hjerpe, R.1    Rodríguez, M.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.