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Volumn 36, Issue 6, 2012, Pages 1105-1121

DNA replication fidelity in Escherichia coli: A multi-DNA polymerase affair

Author keywords

Accessory DNA polymerases; DNA replication fidelity; Exonucleolytic proofreading; Leading and lagging DNA replication; Polymerase switching; Untargeted mutagenesis

Indexed keywords

DNA DIRECTED DNA POLYMERASE GAMMA; DNA POLYMERASE; HOLOENZYME; OKAZAKI FRAGMENT;

EID: 84866930664     PISSN: 01686445     EISSN: 15746976     Source Type: Journal    
DOI: 10.1111/j.1574-6976.2012.00338.x     Document Type: Review
Times cited : (113)

References (159)
  • 1
    • 77954851178 scopus 로고    scopus 로고
    • Biological roles of translesion synthesis DNA polymerases in eubacteria
    • Andersson DI, Koskiniemi S & Hughes D (2010) Biological roles of translesion synthesis DNA polymerases in eubacteria. Mol Microbiol 77: 540-548.
    • (2010) Mol Microbiol , vol.77 , pp. 540-548
    • Andersson, D.I.1    Koskiniemi, S.2    Hughes, D.3
  • 2
    • 26244456365 scopus 로고    scopus 로고
    • DNA polymerase II as a fidelity factor in chromosomal DNA synthesis in Escherichia coli
    • Banach-Orlowska M, Fijalkowska IJ, Schaaper RM & Jonczyk P (2005) DNA polymerase II as a fidelity factor in chromosomal DNA synthesis in Escherichia coli. Mol Microbiol 58: 61-70.
    • (2005) Mol Microbiol , vol.58 , pp. 61-70
    • Banach-Orlowska, M.1    Fijalkowska, I.J.2    Schaaper, R.M.3    Jonczyk, P.4
  • 3
    • 0037566670 scopus 로고    scopus 로고
    • Structural insights into the origins of DNA polymerase fidelity
    • Beard WA & Wilson SH (2003) Structural insights into the origins of DNA polymerase fidelity. Structure 11: 489-496.
    • (2003) Structure , vol.11 , pp. 489-496
    • Beard, W.A.1    Wilson, S.H.2
  • 4
    • 0035902484 scopus 로고    scopus 로고
    • Mechanism of DNA polymerase II-mediated frameshift mutagenesis
    • Becherel OJ & Fuchs RP (2001) Mechanism of DNA polymerase II-mediated frameshift mutagenesis. P Natl Acad Sci USA 98: 8566-8571.
    • (2001) P Natl Acad Sci USA , vol.98 , pp. 8566-8571
    • Becherel, O.J.1    Fuchs, R.P.2
  • 5
    • 0037019606 scopus 로고    scopus 로고
    • Pivotal role of the beta-clamp in translesion DNA synthesis and mutagenesis in E. coli cells
    • Becherel OJ, Fuchs RP & Wagner J (2002) Pivotal role of the beta-clamp in translesion DNA synthesis and mutagenesis in E. coli cells. DNA Repair (Amst) 1: 703-708.
    • (2002) DNA Repair (Amst) , vol.1 , pp. 703-708
    • Becherel, O.J.1    Fuchs, R.P.2    Wagner, J.3
  • 6
    • 0032953043 scopus 로고    scopus 로고
    • DNA polymerase II (polB) is involved in a new DNA repair pathway for DNA interstrand cross-links in Escherichia coli
    • Berardini M, Foster PL & Loechler EL (1999) DNA polymerase II (polB) is involved in a new DNA repair pathway for DNA interstrand cross-links in Escherichia coli. J Bacteriol 181: 2878-2882.
    • (1999) J Bacteriol , vol.181 , pp. 2878-2882
    • Berardini, M.1    Foster, P.L.2    Loechler, E.L.3
  • 8
    • 0035916395 scopus 로고    scopus 로고
    • An aerobic recA-, umuC-dependent pathway of spontaneous base-pair substitution mutagenesis in Escherichia coli
    • Bhamre S, Gadea BB, Koyama CA, White SJ & Fowler RG (2001) An aerobic recA-, umuC-dependent pathway of spontaneous base-pair substitution mutagenesis in Escherichia coli. Mutat Res 473: 229-247.
    • (2001) Mutat Res , vol.473 , pp. 229-247
    • Bhamre, S.1    Gadea, B.B.2    Koyama, C.A.3    White, S.J.4    Fowler, R.G.5
  • 9
    • 0025354943 scopus 로고
    • Programmed ribosomal frameshifting generates the Escherichia coli DNA polymerase III γ subunit from within the τ subunit reading frame
    • Blinkowa AL & Walker JR (1990) Programmed ribosomal frameshifting generates the Escherichia coli DNA polymerase III γ subunit from within the τ subunit reading frame. Nucleic Acids Res 18: 1725-1729.
    • (1990) Nucleic Acids Res , vol.18 , pp. 1725-1729
    • Blinkowa, A.L.1    Walker, J.R.2
  • 10
    • 11944250947 scopus 로고
    • DNA polymerase II is encoded by the DNA damage inducible dinA gene of Escherichia coli
    • Bonner CA, Hays S, McEntee K & Goodman MF (1990) DNA polymerase II is encoded by the DNA damage inducible dinA gene of Escherichia coli. P Natl Acad Sci USA 87: 7663-7667.
    • (1990) P Natl Acad Sci USA , vol.87 , pp. 7663-7667
    • Bonner, C.A.1    Hays, S.2    McEntee, K.3    Goodman, M.F.4
  • 13
    • 0029017879 scopus 로고
    • Purification and properties of wild-type and exonuclease-deficient DNA polymerase II from Escherichia coli
    • Cai H, Yu H, McEntee K, Kunkel TA & Goodman MF (1995) Purification and properties of wild-type and exonuclease-deficient DNA polymerase II from Escherichia coli. J Biol Chem 270: 15327-15335.
    • (1995) J Biol Chem , vol.270 , pp. 15327-15335
    • Cai, H.1    Yu, H.2    McEntee, K.3    Kunkel, T.A.4    Goodman, M.F.5
  • 14
    • 0023684092 scopus 로고
    • Nature of the SOS mutator activity: genetic characterization of untargeted mutagenesis in Escherichia coli
    • Caillet-Fauquet P & Maenhaut-Michel G (1988) Nature of the SOS mutator activity: genetic characterization of untargeted mutagenesis in Escherichia coli. Mol Gen Genet 213: 491-498.
    • (1988) Mol Gen Genet , vol.213 , pp. 491-498
    • Caillet-Fauquet, P.1    Maenhaut-Michel, G.2
  • 15
    • 0015455023 scopus 로고
    • Prophage induction and cell division in E. coli. I. Further characterization of the thermosensitive mutation tif-1 whose expression mimics the effect of UV irradiation
    • Castellazzi M, George J & Buttin G (1972) Prophage induction and cell division in E. coli. I. Further characterization of the thermosensitive mutation tif-1 whose expression mimics the effect of UV irradiation. Mol Gen Genet 119: 139-152.
    • (1972) Mol Gen Genet , vol.119 , pp. 139-152
    • Castellazzi, M.1    George, J.2    Buttin, G.3
  • 16
    • 23644435321 scopus 로고    scopus 로고
    • The bacteriophage P1 hot gene can substitute for the Escherichia coli DNA polymerase III θ subunit
    • Chikova AK & Schaaper RM (2005) The bacteriophage P1 hot gene can substitute for the Escherichia coli DNA polymerase III θ subunit. J Bacteriol 187: 5528-5536.
    • (2005) J Bacteriol , vol.187 , pp. 5528-5536
    • Chikova, A.K.1    Schaaper, R.M.2
  • 17
    • 0019966066 scopus 로고
    • Plasmid pKM101-mediated mutagenesis in Escherichia coli is inducible
    • Ciesla Z (1982) Plasmid pKM101-mediated mutagenesis in Escherichia coli is inducible. Mol Gen Genet 186: 298-300.
    • (1982) Mol Gen Genet , vol.186 , pp. 298-300
    • Ciesla, Z.1
  • 18
    • 0015344221 scopus 로고
    • Role of DNA polymerase I and the rec system in excision-repair in Escherichia coli
    • Cooper PK & Hanawalt PC (1972) Role of DNA polymerase I and the rec system in excision-repair in Escherichia coli. P Natl Acad Sci USA 69: 1156-1160.
    • (1972) P Natl Acad Sci USA , vol.69 , pp. 1156-1160
    • Cooper, P.K.1    Hanawalt, P.C.2
  • 19
    • 58149284239 scopus 로고    scopus 로고
    • DNA polymerase switching: effects on spontaneous mutagenesis in Escherichia coli
    • Curti E, McDonald JP, Mead S & Woodgate R (2009) DNA polymerase switching: effects on spontaneous mutagenesis in Escherichia coli. Mol Microbiol 71: 315-331.
    • (2009) Mol Microbiol , vol.71 , pp. 315-331
    • Curti, E.1    McDonald, J.P.2    Mead, S.3    Woodgate, R.4
  • 20
    • 0034686075 scopus 로고    scopus 로고
    • Characterization of the unique C terminus of the Escherichia coli tau DnaX protein: monomeric C-tau binds alpha and DnaB and can partially replace tau in the reconstituted replication fork
    • Dallmann HG, Kim S, Pritchard AE, Marians KJ & McHenry CS (2000) Characterization of the unique C terminus of the Escherichia coli tau DnaX protein: monomeric C-tau binds alpha and DnaB and can partially replace tau in the reconstituted replication fork. J Biol Chem 275: 15512-15519.
    • (2000) J Biol Chem , vol.275 , pp. 15512-15519
    • Dallmann, H.G.1    Kim, S.2    Pritchard, A.E.3    Marians, K.J.4    McHenry, C.S.5
  • 21
    • 0014686023 scopus 로고
    • Isolation of an E. coli strain with a mutation affecting DNA polymerase
    • De Lucia P & Cairns J (1969) Isolation of an E. coli strain with a mutation affecting DNA polymerase. Nature 224: 1164-1166.
    • (1969) Nature , vol.224 , pp. 1164-1166
    • De Lucia, P.1    Cairns, J.2
  • 22
    • 0026334738 scopus 로고
    • Spontaneous mutation
    • Drake JW (1991) Spontaneous mutation. Annu Rev Genet 25: 125-146.
    • (1991) Annu Rev Genet , vol.25 , pp. 125-146
    • Drake, J.W.1
  • 23
    • 0027471149 scopus 로고
    • General antimutators are improbable
    • Drake JW (1993) General antimutators are improbable. J Mol Biol 229: 8-13.
    • (1993) J Mol Biol , vol.229 , pp. 8-13
    • Drake, J.W.1
  • 27
    • 0027304216 scopus 로고
    • Antimutator mutations in the α subunit of Escherichia coli DNA polymerase III: identification of the responsible mutations and alignment with other DNA polymerases
    • Fijalkowska IJ & Schaaper RM (1993) Antimutator mutations in the α subunit of Escherichia coli DNA polymerase III: identification of the responsible mutations and alignment with other DNA polymerases. Genetics 135: 1039-1044.
    • (1993) Genetics , vol.135 , pp. 1039-1044
    • Fijalkowska, I.J.1    Schaaper, R.M.2
  • 28
    • 0028842855 scopus 로고
    • Effects of Escherichia coli DNA antimutator alleles in proofreading deficient mutD5 strain
    • Fijalkowska IJ & Schaaper RM (1995) Effects of Escherichia coli DNA antimutator alleles in proofreading deficient mutD5 strain. J Bacteriol 177: 5979-5986.
    • (1995) J Bacteriol , vol.177 , pp. 5979-5986
    • Fijalkowska, I.J.1    Schaaper, R.M.2
  • 29
    • 9244225098 scopus 로고    scopus 로고
    • Mutants in the Exo I motif of E. coli dnaQ: defective proofreading and inviability due to error catastrophe
    • Fijalkowska IJ & Schaaper RM (1996) Mutants in the Exo I motif of E. coli dnaQ: defective proofreading and inviability due to error catastrophe. P Natl Acad Sci USA 93: 2856-2861.
    • (1996) P Natl Acad Sci USA , vol.93 , pp. 2856-2861
    • Fijalkowska, I.J.1    Schaaper, R.M.2
  • 30
    • 0027169584 scopus 로고
    • Mutants of Escherichia coli with increased fidelity of DNA replication
    • Fijalkowska IJ, Dunn RL & Schaaper RM (1993) Mutants of Escherichia coli with increased fidelity of DNA replication. Genetics 134: 1023-1030.
    • (1993) Genetics , vol.134 , pp. 1023-1030
    • Fijalkowska, I.J.1    Dunn, R.L.2    Schaaper, R.M.3
  • 31
    • 0030690927 scopus 로고    scopus 로고
    • Genetic requirements and mutational specificity of the Escherichia coli SOS mutator activity
    • Fijalkowska IJ, Dunn RL & Schaaper RM (1997) Genetic requirements and mutational specificity of the Escherichia coli SOS mutator activity. J Bacteriol 179: 7435-7445.
    • (1997) J Bacteriol , vol.179 , pp. 7435-7445
    • Fijalkowska, I.J.1    Dunn, R.L.2    Schaaper, R.M.3
  • 32
  • 33
    • 0025303309 scopus 로고
    • The γ subunit of DNA polymerase III of Escherichia coli is produced by ribosomal frameshifting
    • Flower AM & McHenry CS (1986) The γ subunit of DNA polymerase III of Escherichia coli is produced by ribosomal frameshifting. P Natl Acad Sci USA 87: 3713-3717.
    • (1986) P Natl Acad Sci USA , vol.87 , pp. 3713-3717
    • Flower, A.M.1    McHenry, C.S.2
  • 34
    • 0029097479 scopus 로고
    • Proofreading-defective DNA polymerase II increases adaptive mutation in Escherichia coli
    • Foster PL, Gudmundsson G, Trimarchi JM, Cai H & Goodman MF (1995) Proofreading-defective DNA polymerase II increases adaptive mutation in Escherichia coli. P Natl Acad Sci USA 92: 7951-7955.
    • (1995) P Natl Acad Sci USA , vol.92 , pp. 7951-7955
    • Foster, P.L.1    Gudmundsson, G.2    Trimarchi, J.M.3    Cai, H.4    Goodman, M.F.5
  • 35
    • 0037205001 scopus 로고    scopus 로고
    • Specialized DNA polymerases, cellular survival, and the genesis of mutations
    • Friedberg EC, Wagner R & Radman M (2002) Specialized DNA polymerases, cellular survival, and the genesis of mutations. Science 296: 1627-1630.
    • (2002) Science , vol.296 , pp. 1627-1630
    • Friedberg, E.C.1    Wagner, R.2    Radman, M.3
  • 37
    • 34249942974 scopus 로고    scopus 로고
    • Translesion synthesis in Escherichia coli; lessons from the NarI mutation hot spot
    • Fuchs RP & Fujii S (2007) Translesion synthesis in Escherichia coli; lessons from the NarI mutation hot spot. DNA Repair (Amst) 6: 1032-1041.
    • (2007) DNA Repair (Amst) , vol.6 , pp. 1032-1041
    • Fuchs, R.P.1    Fujii, S.2
  • 38
    • 45549085521 scopus 로고    scopus 로고
    • A dynamic polymerase exchange with Escherichia coli DNA polymerase IV replacing DNA polymerase III on the sliding clamp
    • Furukohri A, Goodman MF & Maki H (2008) A dynamic polymerase exchange with Escherichia coli DNA polymerase IV replacing DNA polymerase III on the sliding clamp. J Biol Chem 283: 11260-11269.
    • (2008) J Biol Chem , vol.283 , pp. 11260-11269
    • Furukohri, A.1    Goodman, M.F.2    Maki, H.3
  • 39
    • 0035830834 scopus 로고    scopus 로고
    • tau binds and organizes Escherichia coli replication proteins trough distinct domains. Domain IV, located within the unique C terminus of tau, binds the replication fork helicase, DnaB
    • Gao D & McHenry (2001) tau binds and organizes Escherichia coli replication proteins trough distinct domains. Domain IV, located within the unique C terminus of tau, binds the replication fork helicase, DnaB. J Biol Chem 276: 4441-4446.
    • (2001) J Biol Chem , vol.276 , pp. 4441-4446
    • Gao, D.1    McHenry2
  • 40
    • 0037171646 scopus 로고    scopus 로고
    • Asymmetry of frameshift mutagenesis during leading and lagging strand replication in Escherichia coli
    • Gawel D, Bialoskorska M, Jonczyk P, Schaaper RM & Fijalkowska IJ (2002a) Asymmetry of frameshift mutagenesis during leading and lagging strand replication in Escherichia coli. Mutat Res 501: 129-136.
    • (2002) Mutat Res , vol.501 , pp. 129-136
    • Gawel, D.1    Bialoskorska, M.2    Jonczyk, P.3    Schaaper, R.M.4    Fijalkowska, I.J.5
  • 42
    • 39749200124 scopus 로고    scopus 로고
    • Role of accessory DNA polymerases in DNA replication in Escherichia coli: analysis of the dnaX36 mutator mutant
    • Gawel D, Pham PT, Fijalkowska IJ, Jonczyk P & Schaaper RM (2008) Role of accessory DNA polymerases in DNA replication in Escherichia coli: analysis of the dnaX36 mutator mutant. J Bacteriol 190: 1730-1742.
    • (2008) J Bacteriol , vol.190 , pp. 1730-1742
    • Gawel, D.1    Pham, P.T.2    Fijalkowska, I.J.3    Jonczyk, P.4    Schaaper, R.M.5
  • 43
    • 78650123216 scopus 로고    scopus 로고
    • dnaX36 mutator of Escherichia coli: effects of the tau subunit of the DNA polymerase III holoenzyme on chromosomal DNA fidelity
    • Gawel D, Jonczyk P, Fijalkowska IJ & Schaaper RM (2011) dnaX36 mutator of Escherichia coli: effects of the tau subunit of the DNA polymerase III holoenzyme on chromosomal DNA fidelity. J Bacteriol 193: 296-300.
    • (2011) J Bacteriol , vol.193 , pp. 296-300
    • Gawel, D.1    Jonczyk, P.2    Fijalkowska, I.J.3    Schaaper, R.M.4
  • 44
    • 0015163962 scopus 로고
    • Analysis of DNA polymerases II and III in mutants of Escherichia coli thermosensitive for DNA synthesis
    • Gefter ML, Hirota Y, Kornberg T, Wechsler JA & Barnoux C (1971) Analysis of DNA polymerases II and III in mutants of Escherichia coli thermosensitive for DNA synthesis. P Natl Acad Sci USA 68: 3150-3153.
    • (1971) P Natl Acad Sci USA , vol.68 , pp. 3150-3153
    • Gefter, M.L.1    Hirota, Y.2    Kornberg, T.3    Wechsler, J.A.4    Barnoux, C.5
  • 45
    • 84855453503 scopus 로고    scopus 로고
    • Single-molecule studies reveal the function of a third polymerase in the replisome
    • Georgescu RE, Kurth I & O'Donnell ME (2012) Single-molecule studies reveal the function of a third polymerase in the replisome. Nat Struct Mol Biol 19: 113-116.
    • (2012) Nat Struct Mol Biol , vol.19 , pp. 113-116
    • Georgescu, R.E.1    Kurth, I.2    O'Donnell, M.E.3
  • 46
    • 0017137313 scopus 로고
    • Control of mutation frequency by bacteriophage T4 DNA polymerase. I. The CB120 antimutator DNA polymerase is defective in strand displacement
    • Gillin FD & Nossal NG (1976) Control of mutation frequency by bacteriophage T4 DNA polymerase. I. The CB120 antimutator DNA polymerase is defective in strand displacement. J Biol Chem 251: 5219-5224.
    • (1976) J Biol Chem , vol.251 , pp. 5219-5224
    • Gillin, F.D.1    Nossal, N.G.2
  • 47
    • 82755165376 scopus 로고    scopus 로고
    • Increase in dNTP pool size during the DNA damage response plays a key role in spontaneous and induced-mutagenesis in Escherichia coli
    • Gon S, Napolitano R, Rocha W, Coulon S & Fuchs RP (2011) Increase in dNTP pool size during the DNA damage response plays a key role in spontaneous and induced-mutagenesis in Escherichia coli. P Natl Acad Sci USA 108: 19311-19316.
    • (2011) P Natl Acad Sci USA , vol.108 , pp. 19311-19316
    • Gon, S.1    Napolitano, R.2    Rocha, W.3    Coulon, S.4    Fuchs, R.P.5
  • 48
    • 0035997344 scopus 로고    scopus 로고
    • Error-prone repair DNA polymerases in prokaryotes and eukaryotes
    • Goodman MF (2002) Error-prone repair DNA polymerases in prokaryotes and eukaryotes. Annu Rev Biochem 71: 17-50.
    • (2002) Annu Rev Biochem , vol.71 , pp. 17-50
    • Goodman, M.F.1
  • 52
    • 69149093261 scopus 로고    scopus 로고
    • A model for DNA polymerase switching involving a single cleft and the rim of the sliding clamp
    • Heltzel JMH, Maul RW, Scouten-Ponticelli SK & Sutton MD (2009b) A model for DNA polymerase switching involving a single cleft and the rim of the sliding clamp. P Natl Acad Sci USA 106: 12664-12669.
    • (2009) P Natl Acad Sci USA , vol.106 , pp. 12664-12669
    • Heltzel, J.M.H.1    Maul, R.W.2    Scouten-Ponticelli, S.K.3    Sutton, M.D.4
  • 53
    • 77955868586 scopus 로고    scopus 로고
    • Translesion DNA synthesis polymerases in DNA interstrand crosslink repair
    • Ho TV & Scharer OD (2010) Translesion DNA synthesis polymerases in DNA interstrand crosslink repair. Environ Mol Mutagen 51: 552-566.
    • (2010) Environ Mol Mutagen , vol.51 , pp. 552-566
    • Ho, T.V.1    Scharer, O.D.2
  • 54
    • 0025847493 scopus 로고
    • Escherichia coli DNA polymerase II is stimulated by DNA polymerase III holoenzyme auxiliary subunits
    • Hughes AJ, Bryan SK, Chen H, Moses RE & McHenry CS (1991) Escherichia coli DNA polymerase II is stimulated by DNA polymerase III holoenzyme auxiliary subunits. J Biol Chem 266: 4568-4573.
    • (1991) J Biol Chem , vol.266 , pp. 4568-4573
    • Hughes, A.J.1    Bryan, S.K.2    Chen, H.3    Moses, R.E.4    McHenry, C.S.5
  • 55
    • 24944543952 scopus 로고    scopus 로고
    • A sliding-clamp toolbelt binds high- and low-fidelity DNA polymerases simultaneously
    • Indiani C, McInerney P, Georgescu R, Goodman MF & O'Donnell M (2005) A sliding-clamp toolbelt binds high- and low-fidelity DNA polymerases simultaneously. Mol Cell 19: 805-815.
    • (2005) Mol Cell , vol.19 , pp. 805-815
    • Indiani, C.1    McInerney, P.2    Georgescu, R.3    Goodman, M.F.4    O'Donnell, M.5
  • 56
    • 65549153598 scopus 로고    scopus 로고
    • Translesion DNA polymerases remodel the replisome and alter the speed of the replicative helicase
    • Indiani C, Langston LD, Yurieva O, Goodman MF & O'Donnell M (2009) Translesion DNA polymerases remodel the replisome and alter the speed of the replicative helicase. P Natl Acad Sci USA 106: 6031-6038.
    • (2009) P Natl Acad Sci USA , vol.106 , pp. 6031-6038
    • Indiani, C.1    Langston, L.D.2    Yurieva, O.3    Goodman, M.F.4    O'Donnell, M.5
  • 57
    • 0025114616 scopus 로고
    • The Escherichia coli polB gene, which encodes DNA polymerase II, is regulated by the SOS system
    • Iwasaki H, Nakata A, Walker GC & Shinagawa H (1990) The Escherichia coli polB gene, which encodes DNA polymerase II, is regulated by the SOS system. J Bacteriol 172: 6268-6273.
    • (1990) J Bacteriol , vol.172 , pp. 6268-6273
    • Iwasaki, H.1    Nakata, A.2    Walker, G.C.3    Shinagawa, H.4
  • 58
    • 0001352834 scopus 로고    scopus 로고
    • On the origin of multiple mutations in human cancers
    • Jackson AL & Loeb LA (1998) On the origin of multiple mutations in human cancers. Semin Cancer Biol 8: 421-429.
    • (1998) Semin Cancer Biol , vol.8 , pp. 421-429
    • Jackson, A.L.1    Loeb, L.A.2
  • 60
    • 0035943399 scopus 로고    scopus 로고
    • Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III
    • Jeruzalmi D, Yurieva O, Zhao Y, Young M, Stewart J, Hingorani M, O'Donnell M & Kuriyan J (2001) Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III. Cell 106: 417-428.
    • (2001) Cell , vol.106 , pp. 417-428
    • Jeruzalmi, D.1    Yurieva, O.2    Zhao, Y.3    Young, M.4    Stewart, J.5    Hingorani, M.6    O'Donnell, M.7    Kuriyan, J.8
  • 61
    • 0027220197 scopus 로고
    • Conformational coupling in DNA polymerase fidelity
    • Johnson KA (1993) Conformational coupling in DNA polymerase fidelity. Annu Rev Biochem 62: 685-713.
    • (1993) Annu Rev Biochem , vol.62 , pp. 685-713
    • Johnson, K.A.1
  • 62
    • 0021368076 scopus 로고
    • Method for determining whether the gene of Escherichia coli is essential - application to the polA gene
    • Joyce CM & Grindley ND (1984) Method for determining whether the gene of Escherichia coli is essential - application to the polA gene. J Bacteriol 158: 636-643.
    • (1984) J Bacteriol , vol.158 , pp. 636-643
    • Joyce, C.M.1    Grindley, N.D.2
  • 63
    • 0026483792 scopus 로고
    • Reactions at the polymerase active site that contribute to the fidelity of Escherichia coli DNA polymerase I (Klenow fragment)
    • Joyce CM, Sun XC & Grindley NDF (1992) Reactions at the polymerase active site that contribute to the fidelity of Escherichia coli DNA polymerase I (Klenow fragment). J Biol Chem 267: 24485-24500.
    • (1992) J Biol Chem , vol.267 , pp. 24485-24500
    • Joyce, C.M.1    Sun, X.C.2    Grindley, N.D.F.3
  • 64
    • 0000322615 scopus 로고    scopus 로고
    • In vivo assembly of overproduced DNA polymerase III. Overproduction, purification and characterization of the α, α-ε and α-ε-θ subunits
    • Kim DR & McHenry CS (1996) In vivo assembly of overproduced DNA polymerase III. Overproduction, purification and characterization of the α, α-ε and α-ε-θ subunits. J Biol Chem 271: 20681-20689.
    • (1996) J Biol Chem , vol.271 , pp. 20681-20689
    • Kim, D.R.1    McHenry, C.S.2
  • 65
    • 0031443646 scopus 로고    scopus 로고
    • Multiple pathways for SOS-induced mutagenesis in Escherichia coli: an overexpression of dinB/dinP results in strongly enhancing mutagenesis in the absence of any exogenous treatment to damage DNA
    • Kim SR, Maenhaut-Michel G, Yamada M, Yamamoto Y, Matsui K, Sofuni T, Nohmi T & Ohmori H (1997) Multiple pathways for SOS-induced mutagenesis in Escherichia coli: an overexpression of dinB/dinP results in strongly enhancing mutagenesis in the absence of any exogenous treatment to damage DNA. P Natl Acad Sci USA 94: 13792-13797.
    • (1997) P Natl Acad Sci USA , vol.94 , pp. 13792-13797
    • Kim, S.R.1    Maenhaut-Michel, G.2    Yamada, M.3    Yamamoto, Y.4    Matsui, K.5    Sofuni, T.6    Nohmi, T.7    Ohmori, H.8
  • 66
    • 0034789619 scopus 로고    scopus 로고
    • Roles of chromosomal and episomal dinB genes encoding DNA pol IV in targeted and untargeted mutagenesis in Escherichia coli
    • Kim SR, Matsui K, Yamada M, Gruz P & Nohmi T (2001) Roles of chromosomal and episomal dinB genes encoding DNA pol IV in targeted and untargeted mutagenesis in Escherichia coli. Mol Genet Genomics 266: 207-215.
    • (2001) Mol Genet Genomics , vol.266 , pp. 207-215
    • Kim, S.R.1    Matsui, K.2    Yamada, M.3    Gruz, P.4    Nohmi, T.5
  • 67
    • 0014943027 scopus 로고
    • DNA polymerase II
    • Knippers R (1970) DNA polymerase II. Nature 228: 1050-1053.
    • (1970) Nature , vol.228 , pp. 1050-1053
    • Knippers, R.1
  • 68
    • 0037072865 scopus 로고    scopus 로고
    • Fidelity of Escherichia coli DNA polymerase IV. Preferential generation of small deletion mutations by dNTP-stabilized misalignments
    • Kobayashi S, Valentine MR, Pham P, O'Donnell M & Goodman MF (2002) Fidelity of Escherichia coli DNA polymerase IV. Preferential generation of small deletion mutations by dNTP-stabilized misalignments. J Biol Chem 277: 34198-34207.
    • (2002) J Biol Chem , vol.277 , pp. 34198-34207
    • Kobayashi, S.1    Valentine, M.R.2    Pham, P.3    O'Donnell, M.4    Goodman, M.F.5
  • 69
    • 0026717535 scopus 로고
    • Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clamp
    • Kong XP, Onrust R, O'Donnell M & Kuriyan J (1992) Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clamp. Cell 69: 425-437.
    • (1992) Cell , vol.69 , pp. 425-437
    • Kong, X.P.1    Onrust, R.2    O'Donnell, M.3    Kuriyan, J.4
  • 72
    • 25144512348 scopus 로고    scopus 로고
    • Mutator phenotype resulting from DNA polymerase IV overproduction in Escherichia coli: preferential mutagenesis on the lagging strand
    • Kuban W, Banach-Orlowska M, Bialoskorska M, Lipowska A, Schaaper RM, Jonczyk P & Fijalkowska IJ (2005) Mutator phenotype resulting from DNA polymerase IV overproduction in Escherichia coli: preferential mutagenesis on the lagging strand. J Bacteriol 187: 6862-6866.
    • (2005) J Bacteriol , vol.187 , pp. 6862-6866
    • Kuban, W.1    Banach-Orlowska, M.2    Bialoskorska, M.3    Lipowska, A.4    Schaaper, R.M.5    Jonczyk, P.6    Fijalkowska, I.J.7
  • 74
    • 2342419732 scopus 로고    scopus 로고
    • DNA replication fidelity
    • Kunkel TA (2004) DNA replication fidelity. J Biol Chem 279: 16895-16898.
    • (2004) J Biol Chem , vol.279 , pp. 16895-16898
    • Kunkel, T.A.1
  • 75
    • 77957740230 scopus 로고    scopus 로고
    • Evolving views of DNA replication (in)fidelity
    • Kunkel TA (2009) Evolving views of DNA replication (in)fidelity. Cold Spring Harb Symp Quant Biol 74: 91-101.
    • (2009) Cold Spring Harb Symp Quant Biol , vol.74 , pp. 91-101
    • Kunkel, T.A.1
  • 78
    • 69749124647 scopus 로고    scopus 로고
    • Whither the replisome: emerging perspectives on the dynamic nature of the DNA replication machinery
    • Langston LD, Indiani C & O'Donnell M (2009) Whither the replisome: emerging perspectives on the dynamic nature of the DNA replication machinery. Cell Cycle 8: 2686-2691.
    • (2009) Cell Cycle , vol.8 , pp. 2686-2691
    • Langston, L.D.1    Indiani, C.2    O'Donnell, M.3
  • 80
    • 0036171550 scopus 로고    scopus 로고
    • The processivity factor beta controls DNA polymerase IV traffic during spontaneous mutagenesis and translesion synthesis in vivo
    • Lenne-Samuel N, Wagner J, Etienne H & Fuchs RP (2002) The processivity factor beta controls DNA polymerase IV traffic during spontaneous mutagenesis and translesion synthesis in vivo. EMBO Rep 3: 45-49.
    • (2002) EMBO Rep , vol.3 , pp. 45-49
    • Lenne-Samuel, N.1    Wagner, J.2    Etienne, H.3    Fuchs, R.P.4
  • 81
    • 0037292424 scopus 로고    scopus 로고
    • Mechanism of the E. coli tau processivity switch during lagging-strand synthesis
    • Leu FP, Georgescu R & O'Donnell M (2003) Mechanism of the E. coli tau processivity switch during lagging-strand synthesis. Mol Cell 11: 315-327.
    • (2003) Mol Cell , vol.11 , pp. 315-327
    • Leu, F.P.1    Georgescu, R.2    O'Donnell, M.3
  • 82
    • 77953166792 scopus 로고    scopus 로고
    • Multiple two-polymerase mechanisms in mammalian translesion synthesis
    • Livneh Z, Ziv O & Shachar S (2010) Multiple two-polymerase mechanisms in mammalian translesion synthesis. Cell Cycle 9: 729-735.
    • (2010) Cell Cycle , vol.9 , pp. 729-735
    • Livneh, Z.1    Ziv, O.2    Shachar, S.3
  • 83
    • 0025773554 scopus 로고
    • Mutator phenotype may be required for multistage carcinogenesis
    • Loeb LA (1991) Mutator phenotype may be required for multistage carcinogenesis. Cancer Res 51: 3075-3079.
    • (1991) Cancer Res , vol.51 , pp. 3075-3079
    • Loeb, L.A.1
  • 84
    • 0035902496 scopus 로고    scopus 로고
    • Interaction of β sliding clamp with MutS, ligase and DNA polymerase I
    • López de Saro FJ & O'Donnell M (2001) Interaction of β sliding clamp with MutS, ligase and DNA polymerase I. P Natl Acad Sci USA 98: 8376-8380.
    • (2001) P Natl Acad Sci USA , vol.98 , pp. 8376-8380
    • López de Saro, F.J.1    O'Donnell, M.2
  • 87
    • 79957744626 scopus 로고    scopus 로고
    • Proofreading deficiency of Pol I increases the levels of spontaneous rpoB mutations in E. coli
    • Makiela-Dzbenska K, Jonczyk P, Schaaper RM & Fijalkowska IJ (2011) Proofreading deficiency of Pol I increases the levels of spontaneous rpoB mutations in E. coli. Mutat Res 712: 28-32.
    • (2011) Mutat Res , vol.712 , pp. 28-32
    • Makiela-Dzbenska, K.1    Jonczyk, P.2    Schaaper, R.M.3    Fijalkowska, I.J.4
  • 89
    • 0015784285 scopus 로고
    • Role of DNA polymerase II in repair replication in Escherichia coli
    • Masker W, Hanawalt P & Shizuya H (1973) Role of DNA polymerase II in repair replication in Escherichia coli. Nat New Biol 244: 242-243.
    • (1973) Nat New Biol , vol.244 , pp. 242-243
    • Masker, W.1    Hanawalt, P.2    Shizuya, H.3
  • 90
    • 38049125552 scopus 로고    scopus 로고
    • The fidelity of DNA synthesis by eukaryotic replicative and translesion synthesis polymerases
    • McCulloch SD & Kunkel TA (2008) The fidelity of DNA synthesis by eukaryotic replicative and translesion synthesis polymerases. Cell Res 18: 148-161.
    • (2008) Cell Res , vol.18 , pp. 148-161
    • McCulloch, S.D.1    Kunkel, T.A.2
  • 92
    • 0141677891 scopus 로고    scopus 로고
    • Chromosomal replicases as asymmetric dimers: studies of subunit arrangements and functional consequences
    • McHenry CS (2003) Chromosomal replicases as asymmetric dimers: studies of subunit arrangements and functional consequences. Mol Microbiol 49: 1157-1165.
    • (2003) Mol Microbiol , vol.49 , pp. 1157-1165
    • McHenry, C.S.1
  • 93
    • 79959431646 scopus 로고    scopus 로고
    • DNA replicases from a bacterial perspective
    • McHenry CS (2011) DNA replicases from a bacterial perspective. Annu Rev Biochem 80: 403-436.
    • (2011) Annu Rev Biochem , vol.80 , pp. 403-436
    • McHenry, C.S.1
  • 94
    • 34547730912 scopus 로고    scopus 로고
    • Characterization of a triple DNA polymerase replisome
    • McInerney P, Johnson A, Katz F & O'Donnell M (2007) Characterization of a triple DNA polymerase replisome. Mol Cell 27: 527-538.
    • (2007) Mol Cell , vol.27 , pp. 527-538
    • McInerney, P.1    Johnson, A.2    Katz, F.3    O'Donnell, M.4
  • 95
    • 0038377325 scopus 로고    scopus 로고
    • The dinB operon and spontaneous mutation in Escherichia coli
    • McKenzie GJ, Magner DB, Lee PL & Rosenberg SM (2003) The dinB operon and spontaneous mutation in Escherichia coli. J Bacteriol 185: 3972-3977.
    • (2003) J Bacteriol , vol.185 , pp. 3972-3977
    • McKenzie, G.J.1    Magner, D.B.2    Lee, P.L.3    Rosenberg, S.M.4
  • 96
    • 0025163907 scopus 로고
    • Base mispair extension kinetics. Comparison of DNA polymerase alpha and reverse transcriptase
    • Mendelman LV, Petrusca J & Goodman MF (1990) Base mispair extension kinetics. Comparison of DNA polymerase alpha and reverse transcriptase. J Biol Chem 265: 2338-2346.
    • (1990) J Biol Chem , vol.265 , pp. 2338-2346
    • Mendelman, L.V.1    Petrusca, J.2    Goodman, M.F.3
  • 97
    • 0029743491 scopus 로고    scopus 로고
    • Fidelity and error specificity of the alpha catalytic subunit of Escherichia coli DNA polymerase III
    • Mo JY & Schaaper RM (1996) Fidelity and error specificity of the alpha catalytic subunit of Escherichia coli DNA polymerase III. J Biol Chem 271: 18947-18953.
    • (1996) J Biol Chem , vol.271 , pp. 18947-18953
    • Mo, J.Y.1    Schaaper, R.M.2
  • 98
    • 0023062989 scopus 로고
    • DNA mismatch correction
    • Modrich P (1987) DNA mismatch correction. Annu Rev Biochem 56: 435-466.
    • (1987) Annu Rev Biochem , vol.56 , pp. 435-466
    • Modrich, P.1
  • 100
    • 33750344433 scopus 로고    scopus 로고
    • Environmental stress and lesion-bypass DNA polymerases
    • Nohmi T (2006) Environmental stress and lesion-bypass DNA polymerases. Annu Rev Microbiol 60: 231-253.
    • (2006) Annu Rev Microbiol , vol.60 , pp. 231-253
    • Nohmi, T.1
  • 101
    • 0024121518 scopus 로고
    • RecA-mediated cleavage activates UmuD for mutagenesis: mechanistic relationship between transcriptional derepression and the posttranslational activation
    • Nohmi T, Battista JR, Dodson LA & Walker GC (1988) RecA-mediated cleavage activates UmuD for mutagenesis: mechanistic relationship between transcriptional derepression and the posttranslational activation. P Natl Acad Sci USA 85: 4331-4335.
    • (1988) P Natl Acad Sci USA , vol.85 , pp. 4331-4335
    • Nohmi, T.1    Battista, J.R.2    Dodson, L.A.3    Walker, G.C.4
  • 102
    • 2542592504 scopus 로고    scopus 로고
    • Effect of deletion of SOS-induced polymerase II, IV and V, on spontaneous mutagenesis in Escherichia coli mutD5
    • Nowosielska A, Janion C & Grzesiuk E (2004) Effect of deletion of SOS-induced polymerase II, IV and V, on spontaneous mutagenesis in Escherichia coli mutD5. Environ Mol Mutagen 43: 226-234.
    • (2004) Environ Mol Mutagen , vol.43 , pp. 226-234
    • Nowosielska, A.1    Janion, C.2    Grzesiuk, E.3
  • 103
    • 33744950932 scopus 로고    scopus 로고
    • Replisome architecture and dynamics in Escherichia coli
    • O'Donnell M (2006) Replisome architecture and dynamics in Escherichia coli. J Biol Chem 281: 10653-10656.
    • (2006) J Biol Chem , vol.281 , pp. 10653-10656
    • O'Donnell, M.1
  • 104
    • 0015184718 scopus 로고
    • Slow joining of newly replicated DNA chains in DNA polymerase I-deficient Escherichia coli mutants
    • Okazaki R, Arisawa M & Sugino A (1971) Slow joining of newly replicated DNA chains in DNA polymerase I-deficient Escherichia coli mutants. P Natl Acad Sci USA 68: 2954-2957.
    • (1971) P Natl Acad Sci USA , vol.68 , pp. 2954-2957
    • Okazaki, R.1    Arisawa, M.2    Sugino, A.3
  • 105
    • 0027994615 scopus 로고
    • Spontaneous mutation in Escherichia coli containing the dnaE911 DNA polymerase antimutator allele
    • Oller AR & Schaaper RM (1994) Spontaneous mutation in Escherichia coli containing the dnaE911 DNA polymerase antimutator allele. Genetics 138: 263-270.
    • (1994) Genetics , vol.138 , pp. 263-270
    • Oller, A.R.1    Schaaper, R.M.2
  • 106
    • 0027213732 scopus 로고
    • The Escherichia coli galK2 papillation assay: its specificity and application to seven newly isolated mutator strains
    • Oller AR, Fijalkowska IJ & Schaaper RM (1993) The Escherichia coli galK2 papillation assay: its specificity and application to seven newly isolated mutator strains. Mutat Res 292: 175-185.
    • (1993) Mutat Res , vol.292 , pp. 175-185
    • Oller, A.R.1    Fijalkowska, I.J.2    Schaaper, R.M.3
  • 107
    • 0036345594 scopus 로고    scopus 로고
    • Yeast origins establish a strand bias for replicational mutagenesis
    • Pavlov YI, Newlon CS & Kunkel CA (2002) Yeast origins establish a strand bias for replicational mutagenesis. Mol Cell 10: 207-213.
    • (2002) Mol Cell , vol.10 , pp. 207-213
    • Pavlov, Y.I.1    Newlon, C.S.2    Kunkel, C.A.3
  • 108
    • 3242736410 scopus 로고    scopus 로고
    • Evidence for interplay among yeast replicative polymerase alpha, delta and epsilon from studies of exonuclease and polymerase active site mutations
    • Pavlov YI, Maki S, Maki H & Kunkel TA (2004) Evidence for interplay among yeast replicative polymerase alpha, delta and epsilon from studies of exonuclease and polymerase active site mutations. BMC Biol 2: 11.
    • (2004) BMC Biol , vol.2 , pp. 11
    • Pavlov, Y.I.1    Maki, S.2    Maki, H.3    Kunkel, T.A.4
  • 109
    • 0024552845 scopus 로고
    • Differential extension of 3′ mispairs is a major contribution to the high fidelity of calf thymus DNA polymerase-alpha
    • Perrino FW & Loeb LA (1989) Differential extension of 3′ mispairs is a major contribution to the high fidelity of calf thymus DNA polymerase-alpha. J Biol Chem 264: 2898-2905.
    • (1989) J Biol Chem , vol.264 , pp. 2898-2905
    • Perrino, F.W.1    Loeb, L.A.2
  • 110
    • 0032483332 scopus 로고    scopus 로고
    • The base substitution and frameshift fidelity of Escherichia coli DNA polymerase III holoenzyme in vitro
    • Pham PT, Olson MW, McHenry CS & Schaaper RM (1998) The base substitution and frameshift fidelity of Escherichia coli DNA polymerase III holoenzyme in vitro. J Biol Chem 273: 23575-23584.
    • (1998) J Biol Chem , vol.273 , pp. 23575-23584
    • Pham, P.T.1    Olson, M.W.2    McHenry, C.S.3    Schaaper, R.M.4
  • 111
    • 0033524918 scopus 로고    scopus 로고
    • Mismatch extension by Escherichia coli DNA polymerase III holoenzyme
    • Pham PT, Olson MW, McHenry CS & Schaaper RM (1999) Mismatch extension by Escherichia coli DNA polymerase III holoenzyme. J Biol Chem 274: 3705-3710.
    • (1999) J Biol Chem , vol.274 , pp. 3705-3710
    • Pham, P.T.1    Olson, M.W.2    McHenry, C.S.3    Schaaper, R.M.4
  • 112
    • 33645081480 scopus 로고    scopus 로고
    • Mutator mutants of Escherichia coli carrying defect in the DNA polymerase III tau subunit
    • Pham PT, Zhao W & Schaaper RM (2006) Mutator mutants of Escherichia coli carrying defect in the DNA polymerase III tau subunit. Mol Microbiol 59: 1149-1161.
    • (2006) Mol Microbiol , vol.59 , pp. 1149-1161
    • Pham, P.T.1    Zhao, W.2    Schaaper, R.M.3
  • 113
    • 34047149973 scopus 로고    scopus 로고
    • Replisome mechanics: insights into twin DNA polymerase machine
    • Pomerantz RT & O'Donnell M (2007) Replisome mechanics: insights into twin DNA polymerase machine. Trends Microbiol 15: 156-164.
    • (2007) Trends Microbiol , vol.15 , pp. 156-164
    • Pomerantz, R.T.1    O'Donnell, M.2
  • 116
    • 34447336941 scopus 로고    scopus 로고
    • Yeast DNA polymerase epsilon participates in leading-strand DNA replication
    • Pursell ZF, Isoz I, Lundström EB, Johansson E & Kunkel TA (2007) Yeast DNA polymerase epsilon participates in leading-strand DNA replication. Science 317: 127-130.
    • (2007) Science , vol.317 , pp. 127-130
    • Pursell, Z.F.1    Isoz, I.2    Lundström, E.B.3    Johansson, E.4    Kunkel, T.A.5
  • 117
    • 0030887046 scopus 로고    scopus 로고
    • The Escherichia coli polB locus is identical to dinA, the structural gene for DNA polymerase II. Characterization of Pol II purified from a polB mutant
    • Qui Z & Goodman MF (1997) The Escherichia coli polB locus is identical to dinA, the structural gene for DNA polymerase II. Characterization of Pol II purified from a polB mutant. J Biol Chem 272: 8611-8617.
    • (1997) J Biol Chem , vol.272 , pp. 8611-8617
    • Qui, Z.1    Goodman, M.F.2
  • 118
    • 0031034338 scopus 로고    scopus 로고
    • Escherichia coli DNA polymerase II catalyzes chromosomal and episomal DNA synthesis in vivo
    • Rangarajan S, Gudmundsson G, Qui Z, Foster PL & Goodman MF (1997) Escherichia coli DNA polymerase II catalyzes chromosomal and episomal DNA synthesis in vivo. P Natl Acad Sci USA 96: 946-951.
    • (1997) P Natl Acad Sci USA , vol.96 , pp. 946-951
    • Rangarajan, S.1    Gudmundsson, G.2    Qui, Z.3    Foster, P.L.4    Goodman, M.F.5
  • 119
    • 0033529750 scopus 로고    scopus 로고
    • A phenotype for enigmatic DNA polymerase II: a pivotal role for pol II in replication restart in UV-irradiated Escherichia coli
    • Rangarajan S, Woodgate R & Goodman MF (1999) A phenotype for enigmatic DNA polymerase II: a pivotal role for pol II in replication restart in UV-irradiated Escherichia coli. P Natl Acad Sci USA 94: 9224-9229.
    • (1999) P Natl Acad Sci USA , vol.94 , pp. 9224-9229
    • Rangarajan, S.1    Woodgate, R.2    Goodman, M.F.3
  • 120
    • 0028915013 scopus 로고
    • Learning about DNA polymerase function by studying antimutator DNA polymerases
    • Reha-Krantz LJ (1995) Learning about DNA polymerase function by studying antimutator DNA polymerases. Trends Biochem Sci 20: 136-140.
    • (1995) Trends Biochem Sci , vol.20 , pp. 136-140
    • Reha-Krantz, L.J.1
  • 121
    • 0027717954 scopus 로고
    • Genetic and biochemical studies of bacteriophage T4 DNA polymerase 3′→5′ exonuclease activity
    • Reha-Krantz LJ & Nonay RL (1993) Genetic and biochemical studies of bacteriophage T4 DNA polymerase 3′→5′ exonuclease activity. J Biol Chem 268: 27100-27108.
    • (1993) J Biol Chem , vol.268 , pp. 27100-27108
    • Reha-Krantz, L.J.1    Nonay, R.L.2
  • 122
    • 0033527533 scopus 로고    scopus 로고
    • The mutagenesis protein UmuC is a DNA polymerase activated by UmuD', RecA and SSB and specialized for translesion synthesis
    • Reuven NB, Arad G, Maor-Shoshani A & Livneh Z (1999) The mutagenesis protein UmuC is a DNA polymerase activated by UmuD', RecA and SSB and specialized for translesion synthesis. J Biol Chem 274: 31763-31766.
    • (1999) J Biol Chem , vol.274 , pp. 31763-31766
    • Reuven, N.B.1    Arad, G.2    Maor-Shoshani, A.3    Livneh, Z.4
  • 123
    • 77951537332 scopus 로고    scopus 로고
    • Stoichiometry and architecture of active DNA replication machinery in Escherichia coli
    • Reyes-Lamothe R, Sherratt DJ & Leake MC (2010) Stoichiometry and architecture of active DNA replication machinery in Escherichia coli. Science 328: 498-501.
    • (2010) Science , vol.328 , pp. 498-501
    • Reyes-Lamothe, R.1    Sherratt, D.J.2    Leake, M.C.3
  • 124
    • 0027482444 scopus 로고
    • Base selection, proofreading and mismatch repair during DNA replication in Escherichia coli
    • Schaaper RM (1993a) Base selection, proofreading and mismatch repair during DNA replication in Escherichia coli. J Biol Chem 273: 23762-23775.
    • (1993) J Biol Chem , vol.273 , pp. 23762-23775
    • Schaaper, R.M.1
  • 125
    • 0027323808 scopus 로고
    • The mutational specificity of two Escherichia coli dnaE antimutator alleles as determined from lacI mutation spectra
    • Schaaper RM (1993b) The mutational specificity of two Escherichia coli dnaE antimutator alleles as determined from lacI mutation spectra. Genetics 134: 1031-1038.
    • (1993) Genetics , vol.134 , pp. 1031-1038
    • Schaaper, R.M.1
  • 126
    • 0030067883 scopus 로고    scopus 로고
    • Suppressors of Escherichia coli mutT: antimutators for DNA replication errors
    • Schaaper RM (1996) Suppressors of Escherichia coli mutT: antimutators for DNA replication errors. Mutat Res 350: 17-23.
    • (1996) Mutat Res , vol.350 , pp. 17-23
    • Schaaper, R.M.1
  • 127
    • 0031894341 scopus 로고    scopus 로고
    • Antimutator mutants in bacteriophage T4 and Escherichia coli
    • Schaaper RM (1998) Antimutator mutants in bacteriophage T4 and Escherichia coli. Genetics 148: 1579-1585.
    • (1998) Genetics , vol.148 , pp. 1579-1585
    • Schaaper, R.M.1
  • 128
    • 18144440112 scopus 로고
    • Mutator action by Escherichia coli strains carrying dnaE mutations
    • Sevastopoulos CG & Glaser DA (1977) Mutator action by Escherichia coli strains carrying dnaE mutations. P Natl Acad Sci USA 74: 3947-3950.
    • (1977) P Natl Acad Sci USA , vol.74 , pp. 3947-3950
    • Sevastopoulos, C.G.1    Glaser, D.A.2
  • 129
    • 33744546833 scopus 로고    scopus 로고
    • Translesion synthesis DNA polymerases and control of genome stability
    • Shcherbakova PV & Fijalkowska IJ (2006) Translesion synthesis DNA polymerases and control of genome stability. Front Biosci 11: 2496-2517.
    • (2006) Front Biosci , vol.11 , pp. 2496-2517
    • Shcherbakova, P.V.1    Fijalkowska, I.J.2
  • 130
    • 0024121627 scopus 로고
    • RecA-dependent cleavage of UmuD protein and SOS mutagenesis
    • Shinagawa H, Iwasaki H, Kato T & Nakata A (1988) RecA-dependent cleavage of UmuD protein and SOS mutagenesis. P Natl Acad Sci USA 85: 1806-1810.
    • (1988) P Natl Acad Sci USA , vol.85 , pp. 1806-1810
    • Shinagawa, H.1    Iwasaki, H.2    Kato, T.3    Nakata, A.4
  • 131
    • 34248551243 scopus 로고    scopus 로고
    • Solution structure of the domain IVa and V of the tau subunit of the Escherichia coli DNA polymerase III and interaction with the alpha subunit
    • Su XC, Jergic S, Keniry MA, Dixon NE & Otting G (2007) Solution structure of the domain IVa and V of the tau subunit of the Escherichia coli DNA polymerase III and interaction with the alpha subunit. Nucleic Acids Res 35: 2825-2832.
    • (2007) Nucleic Acids Res , vol.35 , pp. 2825-2832
    • Su, X.C.1    Jergic, S.2    Keniry, M.A.3    Dixon, N.E.4    Otting, G.5
  • 132
    • 77949567581 scopus 로고    scopus 로고
    • Coordinating DNA polymerase traffic during high and low fidelity synthesis
    • Sutton MD (2010) Coordinating DNA polymerase traffic during high and low fidelity synthesis. Biochim Biophys Acta 1804: 1167-1179.
    • (2010) Biochim Biophys Acta , vol.1804 , pp. 1167-1179
    • Sutton, M.D.1
  • 133
    • 0025314791 scopus 로고
    • RecA protein of Escherichia coli has a third essential role in SOS mutator activity
    • Sweasy JB, Witkin EM, Sinha N & Roegner-Maniscalco V (1990) RecA protein of Escherichia coli has a third essential role in SOS mutator activity. J Bacteriol 172: 3030-3036.
    • (1990) J Bacteriol , vol.172 , pp. 3030-3036
    • Sweasy, J.B.1    Witkin, E.M.2    Sinha, N.3    Roegner-Maniscalco, V.4
  • 134
    • 0032167849 scopus 로고    scopus 로고
    • Mutational analysis of the 3′→5′ proofreading exonuclease of Escherichia coli DNA polymerase III
    • Taft-Benz SA & Schaaper RM (1998) Mutational analysis of the 3′→5′ proofreading exonuclease of Escherichia coli DNA polymerase III. Nucleic Acids Res 26: 4005-4011.
    • (1998) Nucleic Acids Res , vol.26 , pp. 4005-4011
    • Taft-Benz, S.A.1    Schaaper, R.M.2
  • 135
    • 1942539340 scopus 로고    scopus 로고
    • The theta subunit of Escherichia coli DNA polymerase III; a role in stabilizing the epsilon proofreading subunit
    • Taft-Benz SA & Schaaper RM (2004) The theta subunit of Escherichia coli DNA polymerase III; a role in stabilizing the epsilon proofreading subunit. J Bacteriol 186: 2774-2780.
    • (2004) J Bacteriol , vol.186 , pp. 2774-2780
    • Taft-Benz, S.A.1    Schaaper, R.M.2
  • 137
    • 60549092109 scopus 로고    scopus 로고
    • Bypass specialists operate together
    • Takata K & Wood RD (2009) Bypass specialists operate together. EMBO J 28: 313-314.
    • (2009) EMBO J , vol.28 , pp. 313-314
    • Takata, K.1    Wood, R.D.2
  • 139
    • 0034720286 scopus 로고    scopus 로고
    • Roles of E. coli DNA polymerases IV and V in lesion-targeted and untargeted SOS mutagenesis
    • Tang M, Pham P, Shen X, Taylor JS, O'Donnell M, Woodgate R & Goodman MF (2000) Roles of E. coli DNA polymerases IV and V in lesion-targeted and untargeted SOS mutagenesis. Nature 404: 1014-1018.
    • (2000) Nature , vol.404 , pp. 1014-1018
    • Tang, M.1    Pham, P.2    Shen, X.3    Taylor, J.S.4    O'Donnell, M.5    Woodgate, R.6    Goodman, M.F.7
  • 140
    • 0022256044 scopus 로고
    • Plaque color method for rapid isolation of novel recA mutants of Escherichia coli K-12: new classes of protease-constitutive recA mutants
    • Tessman ES & Peterson P (1985) Plaque color method for rapid isolation of novel recA mutants of Escherichia coli K-12: new classes of protease-constitutive recA mutants. J Bacteriol 163: 677-687.
    • (1985) J Bacteriol , vol.163 , pp. 677-687
    • Tessman, E.S.1    Peterson, P.2
  • 141
    • 0037192308 scopus 로고    scopus 로고
    • DNA Pol V-dependent mutator activity in an SOS-induced Escherichia coli strains with a temperature-sensitive DNA polymerase III
    • Timms AR & Bridges BA (2002) DNA Pol V-dependent mutator activity in an SOS-induced Escherichia coli strains with a temperature-sensitive DNA polymerase III. Mutat Res 499: 97-101.
    • (2002) Mutat Res , vol.499 , pp. 97-101
    • Timms, A.R.1    Bridges, B.A.2
  • 144
    • 0037192312 scopus 로고    scopus 로고
    • Sequence analysis and phenotypes of five temperature sensitive mutator alleles of dnaE, encoding modified alpha-catalytic subunits of Escherichia coli DNA polymerase III holoenzyme
    • Vandewiele D, Fernandez de Henestrosa AR, Timms AR, Bridges BA & Woodgate R (2002) Sequence analysis and phenotypes of five temperature sensitive mutator alleles of dnaE, encoding modified alpha-catalytic subunits of Escherichia coli DNA polymerase III holoenzyme. Mutat Res 499: 85-95.
    • (2002) Mutat Res , vol.499 , pp. 85-95
    • Vandewiele, D.1    Fernandez de Henestrosa, A.R.2    Timms, A.R.3    Bridges, B.A.4    Woodgate, R.5
  • 145
    • 0033880695 scopus 로고    scopus 로고
    • Escherichia coli DNA polymerase IV mutator activity: genetic requirements and mutational specificity
    • Wagner J & Nohmi T (2000) Escherichia coli DNA polymerase IV mutator activity: genetic requirements and mutational specificity. J Bacteriol 182: 4587-4595.
    • (2000) J Bacteriol , vol.182 , pp. 4587-4595
    • Wagner, J.1    Nohmi, T.2
  • 146
    • 0000918686 scopus 로고    scopus 로고
    • The dinB encodes a novel E. coli DNA polymerase, DNA pol IV, involved in mutagenesis
    • Wagner J, Gruz P, Kim SR, Yamada M, Matsui K, Fuchs RPP & Nohmi T (1999) The dinB encodes a novel E. coli DNA polymerase, DNA pol IV, involved in mutagenesis. Mol Cell 4: 281-286.
    • (1999) Mol Cell , vol.4 , pp. 281-286
    • Wagner, J.1    Gruz, P.2    Kim, S.R.3    Yamada, M.4    Matsui, K.5    Fuchs, R.P.P.6    Nohmi, T.7
  • 147
    • 0034574554 scopus 로고    scopus 로고
    • The β clamp targets DNA polymerase IV to DNA and strongly increases its processivity
    • Wagner J, Fujii S, Gruz P, Nohmi T & Fuchs RPP (2000) The β clamp targets DNA polymerase IV to DNA and strongly increases its processivity. EMBO Rep 1: 484-488.
    • (2000) EMBO Rep , vol.1 , pp. 484-488
    • Wagner, J.1    Fujii, S.2    Gruz, P.3    Nohmi, T.4    Fuchs, R.P.P.5
  • 148
    • 72549092945 scopus 로고    scopus 로고
    • Structural insight into translesion synthesis by DNA Pol II
    • Wang F & Yang W (2009) Structural insight into translesion synthesis by DNA Pol II. Cell 139: 1279-1289.
    • (2009) Cell , vol.139 , pp. 1279-1289
    • Wang, F.1    Yang, W.2
  • 149
    • 0016295369 scopus 로고
    • Conversion of oX174 viral DNA to double-stranded form by purified Escherichia coli proteins
    • Wickner S & Hurwitz J (1974) Conversion of oX174 viral DNA to double-stranded form by purified Escherichia coli proteins. P Natl Acad Sci USA 71: 4120-4124.
    • (1974) P Natl Acad Sci USA , vol.71 , pp. 4120-4124
    • Wickner, S.1    Hurwitz, J.2
  • 150
    • 0016229703 scopus 로고
    • Thermal enhancement of ultraviolet mutability in a tif-1 uvrA derivative of Escherichia coli B-r: evidence that ultraviolet mutagenesis depends upon the inducible function
    • Witkin EM (1974) Thermal enhancement of ultraviolet mutability in a tif-1 uvrA derivative of Escherichia coli B-r: evidence that ultraviolet mutagenesis depends upon the inducible function. P Natl Acad Sci USA 71: 1930-1934.
    • (1974) P Natl Acad Sci USA , vol.71 , pp. 1930-1934
    • Witkin, E.M.1
  • 151
    • 0021681104 scopus 로고
    • Involvement of the activated form of RecA protein in SOS mutagenesis and stable DNA replication in Escherichia coli
    • Witkin EM & Kogoma T (1984) Involvement of the activated form of RecA protein in SOS mutagenesis and stable DNA replication in Escherichia coli. P Natl Acad Sci USA 81: 7539-7543.
    • (1984) P Natl Acad Sci USA , vol.81 , pp. 7539-7543
    • Witkin, E.M.1    Kogoma, T.2
  • 152
    • 0020030168 scopus 로고
    • Constitutive expression of SOS functions and modulation of mutagenesis resulting from resolution of genetic instability at or near the recA locus of Escherichia coli
    • Witkin EM, McCall JO, Volkert MR & Wermundsen IE (1982) Constitutive expression of SOS functions and modulation of mutagenesis resulting from resolution of genetic instability at or near the recA locus of Escherichia coli. Mol Gen Genet 185: 43-50.
    • (1982) Mol Gen Genet , vol.185 , pp. 43-50
    • Witkin, E.M.1    McCall, J.O.2    Volkert, M.R.3    Wermundsen, I.E.4
  • 153
    • 1642267937 scopus 로고    scopus 로고
    • Polymerase leave fingerprints: analysis of the mutational spectrum in Escherichia coli rpoB to assess the role of polymerase IV in spontaneous mutation
    • Wolff E, Kim M, Hu K, Yang H & Miller JH (2004) Polymerase leave fingerprints: analysis of the mutational spectrum in Escherichia coli rpoB to assess the role of polymerase IV in spontaneous mutation. J Bacteriol 186: 2900-2905.
    • (2004) J Bacteriol , vol.186 , pp. 2900-2905
    • Wolff, E.1    Kim, M.2    Hu, K.3    Yang, H.4    Miller, J.H.5
  • 154
    • 0025815515 scopus 로고
    • Levels of chromosomally encoded Umu proteins and requirements for in vitro UmuD cleavage
    • Woodgate R & Ennis DG (1991) Levels of chromosomally encoded Umu proteins and requirements for in vitro UmuD cleavage. Mol Gen Genet 229: 10-16.
    • (1991) Mol Gen Genet , vol.229 , pp. 10-16
    • Woodgate, R.1    Ennis, D.G.2
  • 155
    • 58149357530 scopus 로고    scopus 로고
    • Replisome dynamics and use of DNA trombone loops to bypass replication blocks
    • Yao NY & O'Donnell M (2008) Replisome dynamics and use of DNA trombone loops to bypass replication blocks. Mol BioSyst 4: 1075-1084.
    • (2008) Mol BioSyst , vol.4 , pp. 1075-1084
    • Yao, N.Y.1    O'Donnell, M.2
  • 156
    • 69449095740 scopus 로고    scopus 로고
    • Single-molecule analysis reveals that the lagging strand increases replisome processivity but slows replication fork progression
    • Yao NY, Georgescu RE, Finkelstein J & O'Donnell ME (2009) Single-molecule analysis reveals that the lagging strand increases replisome processivity but slows replication fork progression. P Natl Acad Sci USA 106: 13236-13241.
    • (2009) P Natl Acad Sci USA , vol.106 , pp. 13236-13241
    • Yao, N.Y.1    Georgescu, R.E.2    Finkelstein, J.3    O'Donnell, M.E.4
  • 157
    • 0037172966 scopus 로고    scopus 로고
    • SOS-induced DNA polymerases enhance long-term survival and evolutionary fitness
    • Yeiser B, Pepper ED, Goodman MF & Finkel SE (2002) SOS-induced DNA polymerases enhance long-term survival and evolutionary fitness. P Natl Acad Sci USA 99: 8737-8741.
    • (2002) P Natl Acad Sci USA , vol.99 , pp. 8737-8741
    • Yeiser, B.1    Pepper, E.D.2    Goodman, M.F.3    Finkel, S.E.4
  • 158
    • 0026698012 scopus 로고
    • Coordinated leading and lagging strand synthesis at the Escherichia coli DNA replication fork: II. Frequency of primer synthesis and efficiency of primer utilization controls Okazaki fragment size
    • Zechner EL, Wu C & Marians KJ (1992a) Coordinated leading and lagging strand synthesis at the Escherichia coli DNA replication fork: II. Frequency of primer synthesis and efficiency of primer utilization controls Okazaki fragment size. J Biol Chem 267: 4045-4053.
    • (1992) J Biol Chem , vol.267 , pp. 4045-4053
    • Zechner, E.L.1    Wu, C.2    Marians, K.J.3
  • 159
    • 0026660979 scopus 로고
    • Coordinated leading and lagging strand synthesis at the Escherichia coli DNA replication fork: III. Polymerase-primer interaction governs primer size
    • Zechner EL, Wu C & Marians KJ (1992b) Coordinated leading and lagging strand synthesis at the Escherichia coli DNA replication fork: III. Polymerase-primer interaction governs primer size. J Biol Chem 267: 4054-4063.
    • (1992) J Biol Chem , vol.267 , pp. 4054-4063
    • Zechner, E.L.1    Wu, C.2    Marians, K.J.3


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