The base substitution and frameshift fidelity of Escherichia coli DNA polymerase III holoenzyme in vitro

Journal of Biological Chemistry

Volumn 273, Issue 36, 1998, Pages 23575-23684

  Pham, Phuong T ^a   Olson, Matthew W ^b   McHenry, Charles S ^b   Schaaper, Roel M ^a  

^a NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES   (United States)

^b UNIVERSITY OF COLORADO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA POLYMERASE;

ARTICLE; BASE MISPAIRING; DNA TEMPLATE; ENZYME ACTIVITY; ESCHERICHIA COLI; FRAMESHIFT MUTATION; NONHUMAN; NUCLEIC ACID BASE SUBSTITUTION; PRIORITY JOURNAL; RIBOSOMAL FRAMESHIFTING;

BASE SEQUENCE; DEOXYRIBONUCLEOTIDES; DNA POLYMERASE III; DNA REPLICATION; DNA, BACTERIAL; ESCHERICHIA COLI; EXODEOXYRIBONUCLEASE V; EXODEOXYRIBONUCLEASES; FRAMESHIFT MUTATION; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; MUTAGENESIS;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 0032483332     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.273.36.23575     Document Type: Article

References (60)

1. Drake, J. W. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 7160-7164
2. Kornberg, A., and Baker, T. A. (1992) DNA Replication, 2nd Ed., pp. 165-182, W. H. Freeman & Co., New York
3. McHenry, G. S. (1991) J. Biol. Chem. 266, 19127-19130
4. Kelman, Z., and O'Donnell, M. (1995) Annu. Rev. Biochem. 64, 171-200
5. Wu, C. A., Zechner, E. L., Hughes, A. J., Jr., Franden, M. A., McHenry, C. S., and Marians, K. J. (1992) J. Biol. Chem. 267, 4064-4073
6. Wu, C. A., Zechner, E. L., Reems, J. A., McHenry, C. S., and Marians, K. J. (1992) J. Biol. Chem. 267, 4074-4083
7. Kim, S., Dallmann, H. G., McHenry, C. S., and Marians, K. J. (1996) Cell 84, 643-650
8. Yuzhakov, A., Turner, J., and O'Donnell, M. (1996) Cell 86, 877-886
9. Kong, X. P., Onrust, R., O'Donnell, M., and Kuriyan, J. (1992) Cell 69, 425-437
10. LaDuca, R. J., Crute, J. J., McHenry, C. S., and Bambara, R. A. (1986) J. Biol. Chem. 261, 7550-7557
11. Stukenberg, P. T., Studwell-Vaughan, P. S., and O'Donnell, M. (1991) J. Biol. Chem. 266, 11328-11334
12. Dallmann, H. G., and McHenry, C. S. (1995) J. Biol. Chem. 270, 29563-29569
13. Onrust, R., Finkelstein, J., Naktinis, V., Turner, J., Fang, L., and O'Donnell, M. (1995) J. Biol. Chem. 270, 13348-13357
14. Mo, J.-Y., and Schaaper, R. M. (1996) J. Biol. Chem. 271, 18947-18953
15. Fersht, A. R. (1979) Proc. Natl. Acad. Sci. U. S. A. 76, 4946-4950
16. Fersht, A. R., and Knill-Jones, J. W. (1981) Proc. Natl. Acad. Sci. U. S. A. 78, 4251-4255
17. Fersht, A. R., and Knill-Jones, J. W. (1983) J. Mol. Biol. 165, 633-654
18. Fersht, A. R., Knill-Jones, J. W., and Tsui, W.-C. (1982) J. Mol. Biol. 156, 37-51
19. Bloom, L. B., Chen, X., Fygenson, D. K., Turner, J., O'Donnell, M. and Goodman, M. F. (1997) J. Biol. Chem. 272, 27919-27930
20. Schaaper, R. M. (1993) J. Biol. Chem. 268, 23762-23765
21. Schaaper, R. M., Danforth, B. N., Glickman, and B. W. (1985) Gene (Amst.) 39, 181-189
22. Kunkel, T. A., Roberts, J. D., and Zakour, R. A. (1987) Methods Enzymol. 154, 367-382
23. Schaaper, R. M., and Dunn, R. L. (1991) Genetics 129, 317-326
24. Schaaper, R. M., and Cornacchio, R. (1992) J. Bacteriol. 174, 1974-1982
25. Dallmann, H. G., Thimmig, R. L., and McHenry, C. S. (1995) J. Biol. Chem. 270, 29555-29562
26. Oberfelder, R., and McHenry, C. S. (1987) J. Biol. Chem. 262, 4190-4194 25
27. Kunkel, T. A., and Soni, A. (1988) J. Biol. Chem. 263, 4450-4459
28. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning. A Laboratory Manual, 2nd Ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
29. Kunkel, T. A. (1985) J. Biol. Chem. 260, 5787-5796
30. Kunkel, T. A., and Alexander, P. S. (1986) J. Biol. Chem. 261, 160-166
31. Cox, E. C., and Horner, D. L. (1982) Genetics 100, 7-18
32. DiFrancesco, R., Bhatnagar, S. K., Brown, A., and Bessman, M. J. (1984) J. Biol. Chem. 259, 5567-5573
33. Scheuermann, R., Tam, S., Burgers, P. M. J., Lu, C., and Echols, H. (1983) Proc. Natl. Acad. Sci. U. S. A. 80, 7085-7089
34. Maruyama, M., Horiuchi, T., Maki, H., and Sekiguchi, M. (1983) J. Mol. Biol. 167, 757-771
35. Scheuermann, R., and Echols, H. (1984) Proc. Natl. Acad. Sci. U. S. A. 81, 7747-7751
36. Fijalkowska, I. J., and Schaaper, R. M. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 2856-2861
37. Jonczyk, P., Nowicka, A., Fijalkowska, I. J., Schaaper, R. M., and Ciesla, Z. (1998) J. Bacteriol. 180, 1563-1566
38. Que, B. G., Downey, K. M., and So, A. G. (1978) Biochemistry 17, 1603-1606
39. Clayton, L. K., Goodman, M. F., Branscomb, E. W., and Galas, D. J. (1979) J. Biol. Chem. 254, 1902-1912
40. Bebenek, K., Joyce, C. M., Fitzgerald, M. P., and Kunkel, T. A. (1990) J. Biol. Chem. 265, 13878-13887
41. Kunkel, T. A., Schaaper, R. M., Beckman, R. A., and Loeb, L. A. (1981) J. Biol. Chem. 256, 9883-9889
42. Kunkel, T. A. (1990) Biochemistry 29, 8003-8011
43. Streisinger, G., Okada, Y., Emrich, J., Newton, J., Terzaghi, E., and Tsugita, A. (1966) Cold Spring Harbor Symp. Quant. Biol. 31, 77-84
44. Streisinger, G., and Owen, J. (1985) Genetics 109, 633-659
45. Kunkel, T. A., and Soni, A. (1988) J. Biol. Chem. 263, 14784-14789
46. Bebenek, K., and Kunkel, T. A. (1990) Proc. Natl. Acad. Sci. U. S. A. 87, 4946-4950
47. Schaaper, R. M., and Dunn, R. L. (1987) Proc. Natl. Acad. Sci. U. S. A. 84, 6220-6224
48. Schaaper, R. M. (1988) Proc. Natl. Acad. Sci. U. S. A. 85, 8126-8130
49. Echols, H., Lu, C., and Burgers, P. M. J. (1983) Proc. Natl. Acad. Sci. U. S. A. 80, 2189-2192
50. Mozzherin, D. Ju., McConnell, M., Jasko, M. V., Krayevsky, A. A., Tan, C.-K., Downey, K. M., and Fisher, P. A. (1996) J. Biol. Chem. 271, 31711-31717
51. Lu, Q., Zhang X., Almaula, N., Mathews, C. K., and Inouye, M. (1995) J. Mol. Biol. 254, 337-341
52. Mendelman, L. V., Boosalis, M. S., Petruska, J., and Goodman, M. F. (1989) J. Biol. Chem. 264, 14415-14423
53. Joyce, C. M., Sun, X. C., and Grindley, N. D. F. (1992) J. Biol. Chem. 267, 24485-24500
54. Malia, S. A., Vyas, R. R., and Basu, A. K. (1996) Biochemistry 35, 4568-4577
55. Shibutani, S. (1993) Chem. Res. Toxicol. 6, 625-629
56. Pavlov, Y. I., Minnick, D. T., Izuta, S., and Kunkel, T. A. (1994) Biochemistry 33, 4695-4701
57. Fowler, R. G., Amutan, M. V., and Isbell, R. J. (1992) Mutat. Res. 284, 307-319
58. Pavlov, Y. I., Suslov, V. V., Shcherbakova, P. V., Kunkel, T. A., Ono, A., Matsuda, A., and Schaaper, R. M. (1996) Mutat. Res. 357, 1-15
59. Donlin, M. J., Patel, S. S., and Johnson, K. A. (1991) Biochemistry 30, 538-546
60. Kunkel, T. A., Patel, S. S., and Johnson, K. A. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 6830-6834