-
1
-
-
33646926758
-
Dynamic nucleosomes and gene transcription
-
Mellor J. Dynamic nucleosomes and gene transcription. Trends Genet 2006; 22(6):320-329.
-
(2006)
Trends Genet
, vol.22
, Issue.6
, pp. 320-329
-
-
Mellor, J.1
-
4
-
-
33846025127
-
Dynamic regulation of histone lysine methylation by demethylases
-
Shi Y, Whetstine Jr. Dynamic regulation of histone lysine methylation by demethylases. Mol Cell 2007; 25(1):1-14.
-
(2007)
Mol Cell
, vol.25
, Issue.1
, pp. 1-14
-
-
Shi, Y.1
Whetstine, J.R.2
-
5
-
-
7244245762
-
Finishing the euchromatic sequence of the human genome
-
Finishing the euchromatic sequence of the human genome. Nature 2004; 431(7011):931-945.
-
(2004)
Nature
, vol.431
, Issue.7011
, pp. 931-945
-
-
-
6
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Waterston RH, Lindblad-Toh K, Birney E et al. Initial sequencing and comparative analysis of the mouse genome. Nature 2002; 420(6915):520-562.
-
(2002)
Nature
, vol.420
, Issue.6915
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
-
7
-
-
0032509302
-
Genome sequence of the nematode C. elegans: A platform for investigating biology
-
Genome sequence of the nematode C. elegans: a platform for investigating biology. Science 1998; 282(5396):2012-2018.
-
(1998)
Science
, vol.282
, Issue.5396
, pp. 2012-2018
-
-
-
8
-
-
0037819447
-
Transcription regulation and animal diversity
-
Levine M, Tjian R. Transcription regulation and animal diversity. Nature 2003; 424(6945):147-151.
-
(2003)
Nature
, vol.424
, Issue.6945
, pp. 147-151
-
-
Levine, M.1
Tjian, R.2
-
10
-
-
14544280757
-
Transcriptional regulation and the role of diverse coactivators in animal cells
-
Roeder RG. Transcriptional regulation and the role of diverse coactivators in animal cells. FEBS Lett 2005; 579(4):909-915.
-
(2005)
FEBS Lett
, vol.579
, Issue.4
, pp. 909-915
-
-
Roeder, R.G.1
-
11
-
-
0031310825
-
The mechanism of transcriptional synergy of an in vitro assembled interferon-beta enhanceosome
-
Kim TK, Maniatis T. The mechanism of transcriptional synergy of an in vitro assembled interferon-beta enhanceosome. Mol Cell 1997; 1(1):119-129.
-
(1997)
Mol Cell
, vol.1
, Issue.1
, pp. 119-129
-
-
Kim, T.K.1
Maniatis, T.2
-
12
-
-
0033056554
-
Multiprotein-DNA complexes in transcriptional regulation
-
Wolberger C. Multiprotein-DNA complexes in transcriptional regulation. Annu Rev Biophys Biomol Struct 1999; 28:29-56.
-
(1999)
Annu Rev Biophys Biomol Struct
, vol.28
, pp. 29-56
-
-
Wolberger, C.1
-
13
-
-
0036537298
-
Transcription factor complexes
-
Burley SK, Kamada K. Transcription factor complexes. Curr Opin Struct Biol 2002; 12(2):225-230.
-
(2002)
Curr Opin Struct Biol
, vol.12
, Issue.2
, pp. 225-230
-
-
Burley, S.K.1
Kamada, K.2
-
14
-
-
0037311664
-
Eukaryotic transcriptional regulatory complexes: Cooperativity from near and afar
-
Ogata K, Sato K, Tahirov TH. Eukaryotic transcriptional regulatory complexes: cooperativity from near and afar. Curr Opin Struct Biol 2003; 13(1):40-48.
-
(2003)
Curr Opin Struct Biol
, vol.13
, Issue.1
, pp. 40-48
-
-
Ogata, K.1
Sato, K.2
Tahirov, T.H.3
-
15
-
-
0025995844
-
A structural taxonomy of DNA-binding domains
-
Harrison SC. A structural taxonomy of DNA-binding domains. Nature 1991; 353(6346):715-719.
-
(1991)
Nature
, vol.353
, Issue.6346
, pp. 715-719
-
-
Harrison, S.C.1
-
16
-
-
0027458366
-
The Ets family of transcription factors
-
Wasylyk B, Hahn SL, Giovane A. The Ets family of transcription factors. Eur J Biochem 1993; 211(1-2):7-18.
-
(1993)
Eur J Biochem
, vol.211
, Issue.1-2
, pp. 7-18
-
-
Wasylyk, B.1
Hahn, S.L.2
Giovane, A.3
-
17
-
-
0028934434
-
The MADS-box family of transcription factors
-
Shore P, Sharrocks AD. The MADS-box family of transcription factors. Eur J Biochem 1995; 229(1):1-13.
-
(1995)
Eur J Biochem
, vol.229
, Issue.1
, pp. 1-13
-
-
Shore, P.1
Sharrocks, A.D.2
-
18
-
-
0026236663
-
The helix-loop-helix domain: A common motif for bristles, muscles and sex
-
Garrell J, Campuzano S. The helix-loop-helix domain: A common motif for bristles, muscles and sex. Bioessays 1991; 13(10):493-498.
-
(1991)
Bioessays
, vol.13
, Issue.10
, pp. 493-498
-
-
Garrell, J.1
Campuzano, S.2
-
19
-
-
0026816336
-
The rel family of proteins
-
Rushlow C, Warrior R. The rel family of proteins. Bioessays 1992; 14(2):89-95.
-
(1992)
Bioessays
, vol.14
, Issue.2
, pp. 89-95
-
-
Rushlow, C.1
Warrior, R.2
-
20
-
-
0028913109
-
A STAT protein domain that determines DNA sequence recognition suggests a novel DNA-binding domain
-
Horvath CM, Wen Z, Darnell JE Jr. A STAT protein domain that determines DNA sequence recognition suggests a novel DNA-binding domain. Genes Dev 1995; 9(8):984-994.
-
(1995)
Genes Dev
, vol.9
, Issue.8
, pp. 984-994
-
-
Horvath, C.M.1
Wen, Z.2
Darnell Jr., J.E.3
-
21
-
-
33750040230
-
Structure, function and regulation of STAT proteins
-
Lim CP, Cao X. Structure, function and regulation of STAT proteins. Mol Biosyst 2006; 2(11):536-550.
-
(2006)
Mol Biosyst
, vol.2
, Issue.11
, pp. 536-550
-
-
Lim, C.P.1
Cao, X.2
-
22
-
-
0032577678
-
Crystal structure of a tyrosine phosphorylated STAT-1 dimer bound to DNA
-
Chen X, Vinkemeier U, Zhao Y et al. Crystal structure of a tyrosine phosphorylated STAT-1 dimer bound to DNA. Cell 1998; 93(5):827-839.
-
(1998)
Cell
, vol.93
, Issue.5
, pp. 827-839
-
-
Chen, X.1
Vinkemeier, U.2
Zhao, Y.3
-
23
-
-
0025217856
-
The MyoD DNA binding domain contains a recognition code for muscle-specific gene activation
-
Davis RL, Cheng PF, Lassar AB et al. The MyoD DNA binding domain contains a recognition code for muscle-specific gene activation. Cell 1990; 60(5):733-746.
-
(1990)
Cell
, vol.60
, Issue.5
, pp. 733-746
-
-
Davis, R.L.1
Cheng, P.F.2
Lassar, A.B.3
-
24
-
-
0016774265
-
Tropomyosin coiled-coil interactions: Evidence for an unstaggered structure
-
McLachlan AD, Stewart M. Tropomyosin coiled-coil interactions: Evidence for an unstaggered structure. J Mol Biol 1975; 98(2):293-304.
-
(1975)
J Mol Biol
, vol.98
, Issue.2
, pp. 293-304
-
-
McLachlan, A.D.1
Stewart, M.2
-
25
-
-
33646157076
-
Deciphering B-ZIP transcription factor interactions in vitro and in vivo
-
Vinson C, Acharya A, Taparowsky EJ. Deciphering B-ZIP transcription factor interactions in vitro and in vivo. Biochim Biophys Acta 2006; 1759(1-2):4-12.
-
(2006)
Biochim Biophys Acta
, vol.1759
, Issue.1-2
, pp. 4-12
-
-
Vinson, C.1
Acharya, A.2
Taparowsky, E.J.3
-
26
-
-
0024295767
-
The leucine zipper: A hypothetical structure common to a new class of DNA binding proteins
-
Landschulz WH, Johnson PF, McKnight SL. The leucine zipper: A hypothetical structure common to a new class of DNA binding proteins. Science 1988; 240(4860):1759-1764.
-
(1988)
Science
, vol.240
, Issue.4860
, pp. 1759-1764
-
-
Landschulz, W.H.1
Johnson, P.F.2
McKnight, S.L.3
-
27
-
-
0026331267
-
X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil
-
O'Shea EK, Klemm JD, Kim PS et al. X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil. Science 1991; 254(5031):539-544.
-
(1991)
Science
, vol.254
, Issue.5031
, pp. 539-544
-
-
O'Shea, E.K.1
Klemm, J.D.2
Kim, P.S.3
-
28
-
-
0025017975
-
Altered protein conformation on DNA binding by Fos and Jun
-
Patel L, Abate C, Curran T. Altered protein conformation on DNA binding by Fos and Jun. Nature 1990; 347(6293):572-575.
-
(1990)
Nature
, vol.347
, Issue.6293
, pp. 572-575
-
-
Patel, L.1
Abate, C.2
Curran, T.3
-
29
-
-
0025155512
-
Folding transition in the DNA-binding domain of GCN4 on specific binding to DNA
-
Weiss MA, Ellenberger T, Wobbe CR et al. Folding transition in the DNA-binding domain of GCN4 on specific binding to DNA. Nature 1990; 347(6293):575-578.
-
(1990)
Nature
, vol.347
, Issue.6293
, pp. 575-578
-
-
Weiss, M.A.1
Ellenberger, T.2
Wobbe, C.R.3
-
30
-
-
0035865250
-
Expressing the human genome
-
Tupler R, Perini G, Green MR. Expressing the human genome. Nature 2001; 409(6822):832-833.
-
(2001)
Nature
, vol.409
, Issue.6822
, pp. 832-833
-
-
Tupler, R.1
Perini, G.2
Green, M.R.3
-
31
-
-
0036676523
-
B-ZIP proteins encoded by the Drosophila genome: Evaluation of potential dimerization partners
-
Fassler J, Landsman D, Acharya A et al. B-ZIP proteins encoded by the Drosophila genome: evaluation of potential dimerization partners. Genome Res 2002; 12(8):1190-1200.
-
(2002)
Genome Res
, vol.12
, Issue.8
, pp. 1190-1200
-
-
Fassler, J.1
Landsman, D.2
Acharya, A.3
-
32
-
-
0036724089
-
Classification of human B-ZIP proteins based on dimerization properties
-
Vinson C, Myakishev M, Acharya A et al. Classification of human B-ZIP proteins based on dimerization properties. Mol Cell Biol 2002; 22(18):6321-6335.
-
(2002)
Mol Cell Biol
, vol.22
, Issue.18
, pp. 6321-6335
-
-
Vinson, C.1
Myakishev, M.2
Acharya, A.3
-
33
-
-
0037595546
-
Comprehensive identification of human bZIP interactions with coiled-coil arrays
-
Newman JR, Keating AE. Comprehensive identification of human bZIP interactions with coiled-coil arrays. Science 2003; 300(5628):2097-2101.
-
(2003)
Science
, vol.300
, Issue.5628
, pp. 2097-2101
-
-
Newman, J.R.1
Keating, A.E.2
-
34
-
-
3042699706
-
Dimerization specificity of all 67 B-ZIP motifs in Arabidopsis thaliana: A comparison to Homo sapiens B-ZIP motifs
-
Deppmann CD, Acharya A, Rishi V et al. Dimerization specificity of all 67 B-ZIP motifs in Arabidopsis thaliana: a comparison to Homo sapiens B-ZIP motifs. Nucleic Acids Res 2004; 32(11):3435-3445.
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.11
, pp. 3435-3445
-
-
Deppmann, C.D.1
Acharya, A.2
Rishi, V.3
-
35
-
-
4143058720
-
Predicting specificity in bZIP coiled-coil protein interactions
-
Fong JH, Keating AE, Singh M. Predicting specificity in bZIP coiled-coil protein interactions. Genome Biol 2004; 5(2):R11
-
(2004)
Genome Biol
, vol.5
, Issue.2
-
-
Fong, J.H.1
Keating, A.E.2
Singh, M.3
-
36
-
-
33748049771
-
Cross-species annotation of basic leucine zipper factor interactions: Insight into the evolution of closed interaction networks
-
Deppmann CD, Alvania RS, Taparowsky EJ. Cross-species annotation of basic leucine zipper factor interactions: Insight into the evolution of closed interaction networks. Mol Biol Evol 2006; 23(8):1480-1492.
-
(2006)
Mol Biol Evol
, vol.23
, Issue.8
, pp. 1480-1492
-
-
Deppmann, C.D.1
Alvania, R.S.2
Taparowsky, E.J.3
-
37
-
-
2242475745
-
A heterodimerizing leucine zipper coiled coil system for examining the specificity of a position interactions: Amino acids I, V, L, N, A and K
-
Acharya A, Ruvinov SB, Gal J et al. A heterodimerizing leucine zipper coiled coil system for examining the specificity of a position interactions: Amino acids I, V, L, N, A and K. Biochemistry 2002; 41(48):14122-14131.
-
(2002)
Biochemistry
, vol.41
, Issue.48
, pp. 14122-14131
-
-
Acharya, A.1
Ruvinov, S.B.2
Gal, J.3
-
38
-
-
0028303384
-
A thermodynamic scale for leucine zipper stability and dimerization specificity: E and g interhelical interactions
-
Krylov D, Mikhailenko I, Vinson C. A thermodynamic scale for leucine zipper stability and dimerization specificity: E and g interhelical interactions. EMBO J 1994; 13(12):2849-2861.
-
(1994)
EMBO J
, vol.13
, Issue.12
, pp. 2849-2861
-
-
Krylov, D.1
Mikhailenko, I.2
Vinson, C.3
-
39
-
-
0026571898
-
Mechanism of specificity in the Fos-Jun oncoprotein heterodimer
-
O'Shea EK, Rutkowski R, Kim PS. Mechanism of specificity in the Fos-Jun oncoprotein heterodimer. Cell 1992; 68(4):699-708.
-
(1992)
Cell
, vol.68
, Issue.4
, pp. 699-708
-
-
O'Shea, E.K.1
Rutkowski, R.2
Kim, P.S.3
-
40
-
-
0028894384
-
Crystal structure of the heterodimeric bZIP transcription factor c-Fos-c-Jun bound to DNA
-
Glover JN, Harrison SC. Crystal structure of the heterodimeric bZIP transcription factor c-Fos-c-Jun bound to DNA. Nature 1995; 373(6511):257-261.
-
(1995)
Nature
, vol.373
, Issue.6511
, pp. 257-261
-
-
Glover, J.N.1
Harrison, S.C.2
-
41
-
-
0032485391
-
Structure of the DNA-binding domains from NFAT, Fos and Jun bound specifically to DNA
-
Chen L, Glover JN, Hogan PG et al. Structure of the DNA-binding domains from NFAT, Fos and Jun bound specifically to DNA. Nature 1998; 392(6671):42-48.
-
(1998)
Nature
, vol.392
, Issue.6671
, pp. 42-48
-
-
Chen, L.1
Glover, J.N.2
Hogan, P.G.3
-
42
-
-
0141991995
-
Role of MADS box proteins and their cofactors in combinatorial control of gene expression and cell development
-
Messenguy F, Dubois E. Role of MADS box proteins and their cofactors in combinatorial control of gene expression and cell development. Gene 2003; 316:1-21.
-
(2003)
Gene
, vol.316
, pp. 1-21
-
-
Messenguy, F.1
Dubois, E.2
-
43
-
-
0026321622
-
DNA binding specificity of homeodomains
-
Laughon A. DNA binding specificity of homeodomains. Biochemistry 1991; 30(48):11357-11367.
-
(1991)
Biochemistry
, vol.30
, Issue.48
, pp. 11357-11367
-
-
Laughon, A.1
-
44
-
-
0028828745
-
Crystal structure of the MATa1/MAT alpha 2 homeodomain heterodimer bound to DNA
-
Li T, Stark MR, Johnson AD et al. Crystal structure of the MATa1/MAT alpha 2 homeodomain heterodimer bound to DNA. Science 1995; 270(5234):262-269.
-
(1995)
Science
, vol.270
, Issue.5234
, pp. 262-269
-
-
Li, T.1
Stark, M.R.2
Johnson, A.D.3
-
45
-
-
0024290441
-
The yeast cell-type-specific repressor alpha 2 acts cooperatively with a noncell-type-specific protein
-
Keleher CA, Goutte C, Johnson AD. The yeast cell-type-specific repressor alpha 2 acts cooperatively with a noncell-type-specific protein. Cell 1988; 53(6):927-936.
-
(1988)
Cell
, vol.53
, Issue.6
, pp. 927-936
-
-
Keleher, C.A.1
Goutte, C.2
Johnson, A.D.3
-
46
-
-
0032509980
-
Crystal structure of the yeast MATalpha2/MCM1/DNA ternary complex
-
Tan S, Richmond TJ. Crystal structure of the yeast MATalpha2/MCM1/DNA ternary complex. Nature 1998; 391(6668):660-666.
-
(1998)
Nature
, vol.391
, Issue.6668
, pp. 660-666
-
-
Tan, S.1
Richmond, T.J.2
-
47
-
-
0028325785
-
Recognition of a DNA operator by a dimer composed of two different homeodomain proteins
-
Goutte C, Johnson AD. Recognition of a DNA operator by a dimer composed of two different homeodomain proteins. EMBO J 1994; 13(6):1434-1442.
-
(1994)
EMBO J
, vol.13
, Issue.6
, pp. 1434-1442
-
-
Goutte, C.1
Johnson, A.D.2
-
48
-
-
12644271902
-
A critical arginine residue mediates cooperativity in the contact interface between transcription factors NFAT and AP-1
-
Peterson BR, Sun LJ, Verdine GL. A critical arginine residue mediates cooperativity in the contact interface between transcription factors NFAT and AP-1. Proc Natl Acad Sci USA. 1996; 93(24):13671-13676.
-
(1996)
Proc Natl Acad Sci USA.
, vol.93
, Issue.24
, pp. 13671-13676
-
-
Peterson, B.R.1
Sun, L.J.2
Verdine, G.L.3
-
49
-
-
0030973579
-
Transcription factors of the NFAT family: Regulation and function
-
Rao A, Luo C, Hogan PG. Transcription factors of the NFAT family: regulation and function. Annu Rev Immunol 1997; 15:707-747.
-
(1997)
Annu Rev Immunol
, vol.15
, pp. 707-747
-
-
Rao, A.1
Luo, C.2
Hogan, P.G.3
-
50
-
-
0031882652
-
New core promoter element in RNA polymerase II-dependent transcription: Sequence-specific DNA binding by transcription factor IIB
-
Lagrange T, Kapanidis AN, Tang H et al. New core promoter element in RNA polymerase II-dependent transcription: sequence-specific DNA binding by transcription factor IIB. Genes Dev 1998; 12(1):34-44.
-
(1998)
Genes Dev
, vol.12
, Issue.1
, pp. 34-44
-
-
Lagrange, T.1
Kapanidis, A.N.2
Tang, H.3
-
51
-
-
33747881750
-
The general transcription machinery and general cofactors
-
Thomas MC, Chiang CM. The general transcription machinery and general cofactors. Crit Rev Biochem Mol Biol 2006; 41(3):105-178.
-
(2006)
Crit Rev Biochem Mol Biol
, vol.41
, Issue.3
, pp. 105-178
-
-
Thomas, M.C.1
Chiang, C.M.2
-
52
-
-
0025812701
-
Convergence of Ets- and notch-related structural motifs in a heteromeric DNA binding complex
-
Thompson CC, Brown TA, McKnight SL. Convergence of Ets- and notch-related structural motifs in a heteromeric DNA binding complex. Science 1991; 253(5021):762-768.
-
(1991)
Science
, vol.253
, Issue.5021
, pp. 762-768
-
-
Thompson, C.C.1
Brown, T.A.2
McKnight, S.L.3
-
53
-
-
0027256435
-
Identity of GABP with NRF-2, a multisubunit activator of cytochrome oxidase expression, reveals a cellular role for an ETS domain activator of viral promoters
-
Virbasius JV, Virbasius CA, Scarpulla RC. Identity of GABP with NRF-2, a multisubunit activator of cytochrome oxidase expression, reveals a cellular role for an ETS domain activator of viral promoters. Genes Dev 1993; 7(3):380-392.
-
(1993)
Genes Dev
, vol.7
, Issue.3
, pp. 380-392
-
-
Virbasius, J.V.1
Virbasius, C.A.2
Scarpulla, R.C.3
-
54
-
-
0032190610
-
Combinatorial transcription factors
-
Wolberger C. Combinatorial transcription factors. Curr Opin Genet Dev 1998; 8(5):552-559.
-
(1998)
Curr Opin Genet Dev
, vol.8
, Issue.5
, pp. 552-559
-
-
Wolberger, C.1
-
55
-
-
0035831044
-
Structural analyses of DNA recognition by the AML1/Runx-1 Runt domain and its allosteric control by CBFbeta
-
Tahirov TH, Inoue-Bungo T, Morii H et al. Structural analyses of DNA recognition by the AML1/Runx-1 Runt domain and its allosteric control by CBFbeta. Cell 2001; 104(5):755-767.
-
(2001)
Cell
, vol.104
, Issue.5
, pp. 755-767
-
-
Tahirov, T.H.1
Inoue-Bungo, T.2
Morii, H.3
-
56
-
-
0035066381
-
The leukemia-associated AML1 (Runx1) - CBF beta complex functions as a DNA-induced molecular clamp
-
Bravo J, Li Z, Speck NA et al. The leukemia-associated AML1 (Runx1) - CBF beta complex functions as a DNA-induced molecular clamp. Nat Struct Biol 2001; 8(4):371-378.
-
(2001)
Nat Struct Biol
, vol.8
, Issue.4
, pp. 371-378
-
-
Bravo, J.1
Li, Z.2
Speck, N.A.3
-
57
-
-
0025078530
-
Cloning of the p50 DNA binding subunit of NF-kappa B: Homology to rel and dorsal
-
Ghosh S, Gifford AM, Riviere LR et al. Cloning of the p50 DNA binding subunit of NF-kappa B: homology to rel and dorsal. Cell 1990; 62(5):1019-1029.
-
(1990)
Cell
, vol.62
, Issue.5
, pp. 1019-1029
-
-
Ghosh, S.1
Gifford, A.M.2
Riviere, L.R.3
-
58
-
-
0028979476
-
Structure of the NF-kappa B p50 homodimer bound to DNA
-
Muller CW, Rey FA, Sodeoka M et al. Structure of the NF-kappa B p50 homodimer bound to DNA. Nature 1995; 373(6512):311-317.
-
(1995)
Nature
, vol.373
, Issue.6512
, pp. 311-317
-
-
Muller, C.W.1
Rey, F.A.2
Sodeoka, M.3
-
59
-
-
0028979479
-
Structure of NF-kappa B p50 homodimer bound to a kappa B site
-
Ghosh G, van Duyne G, Ghosh S et al. Structure of NF-kappa B p50 homodimer bound to a kappa B site. Nature 1995; 373(6512):303-310.
-
(1995)
Nature
, vol.373
, Issue.6512
, pp. 303-310
-
-
Ghosh, G.1
Van Duyne, G.2
Ghosh, S.3
-
60
-
-
0042925463
-
Crystal structure of NF-kappaB (p50)2 complexed to a high-affinity RNA aptamer
-
Huang DB, Vu D, Cassiday LA et al. Crystal structure of NF-kappaB (p50)2 complexed to a high-affinity RNA aptamer. Proc Natl Acad Sci USA 2003; 100(16):9268-9273.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, Issue.16
, pp. 9268-9273
-
-
Huang, D.B.1
Vu, D.2
Cassiday, L.A.3
-
61
-
-
0031964687
-
A novel DNA recognition mode by the NF-kappa B p65 homodimer
-
Chen YQ, Ghosh S, Ghosh G. A novel DNA recognition mode by the NF-kappa B p65 homodimer. Nat Struct Biol 1998; 5(1):67-73.
-
(1998)
Nat Struct Biol
, vol.5
, Issue.1
, pp. 67-73
-
-
Chen, Y.Q.1
Ghosh, S.2
Ghosh, G.3
-
62
-
-
30444458235
-
Stats: Multifaceted regulators of transcription
-
Brierley MM, Fish EN. Stats: multifaceted regulators of transcription. J Interferon Cytokine Res 2005; 25(12):733-744.
-
(2005)
J Interferon Cytokine Res
, vol.25
, Issue.12
, pp. 733-744
-
-
Brierley, M.M.1
Fish, E.N.2
-
63
-
-
0025172081
-
ISGF3, the transcriptional activator induced by interferon alpha, consists of multiple interacting polypeptide chains
-
Fu XY, Kessler DS, Veals SA et al. ISGF3, the transcriptional activator induced by interferon alpha, consists of multiple interacting polypeptide chains. Proc Natl Acad Sci USA 1990; 87(21):8555-8559.
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, Issue.21
, pp. 8555-8559
-
-
Fu, X.Y.1
Kessler, D.S.2
Veals, S.A.3
-
64
-
-
0023625090
-
Phorbol ester-inducible genes contain a common cis element recognized by a TPA-modulated trans-acting factor
-
Angel P, Imagawa M, Chiu R et al. Phorbol ester-inducible genes contain a common cis element recognized by a TPA-modulated trans-acting factor. Cell 1987; 49(6):729-739.
-
(1987)
Cell
, vol.49
, Issue.6
, pp. 729-739
-
-
Angel, P.1
Imagawa, M.2
Chiu, R.3
-
65
-
-
0000690898
-
Identification of a cyclic-AMP-responsive element within the rat somatostatin gene
-
Montminy MR, Sevarino KA, Wagner JA et al. Identification of a cyclic-AMP-responsive element within the rat somatostatin gene. Proc Natl Acad Sci USA. 1986; 83(18):6682-6686
-
(1986)
Proc Natl Acad Sci USA
, vol.83
, Issue.18
, pp. 6682-6686
-
-
Montminy, M.R.1
Sevarino, K.A.2
Wagner, J.A.3
-
66
-
-
0032522804
-
Autocrine growth and anchorage independence: Two complementing Jun-controlled genetic programs of cellular transformation
-
van Dam H, Huguier S, Kooistra K et al. Autocrine growth and anchorage independence: two complementing Jun-controlled genetic programs of cellular transformation. Genes Dev 1998; 12(8):1227-1239.
-
(1998)
Genes Dev
, vol.12
, Issue.8
, pp. 1227-1239
-
-
Van Dam, H.1
Huguier, S.2
Kooistra, K.3
-
67
-
-
0024425433
-
Octamer transcription factors bind to two different sequence motifs of the immunoglobulin heavy chain promoter
-
Kemler I, Schreiber E, Muller MM et al. Octamer transcription factors bind to two different sequence motifs of the immunoglobulin heavy chain promoter. EMBO J 1989; 8(7):2001-2008.
-
(1989)
EMBO J
, vol.8
, Issue.7
, pp. 2001-2008
-
-
Kemler, I.1
Schreiber, E.2
Muller, M.M.3
-
68
-
-
0033639075
-
Synergism with the coactivator OBF-1 (OCA-B, BOB-1) is mediated by a specific POU dimer configuration
-
Tomilin A, Remenyi A, Lins K et al. Synergism with the coactivator OBF-1 (OCA-B, BOB-1) is mediated by a specific POU dimer configuration. Cell 2000; 103(6):853-864.
-
(2000)
Cell
, vol.103
, Issue.6
, pp. 853-864
-
-
Tomilin, A.1
Remenyi, A.2
Lins, K.3
-
69
-
-
0032128171
-
New POU dimer configuration mediates antagonistic control of an osteopontin preimplantation enhancer by Oct-4 and Sox-2
-
Botquin V, Hess H, Fuhrmann G et al. New POU dimer configuration mediates antagonistic control of an osteopontin preimplantation enhancer by Oct-4 and Sox-2. Genes Dev 1998; 12(13):2073-2090.
-
(1998)
Genes Dev
, vol.12
, Issue.13
, pp. 2073-2090
-
-
Botquin, V.1
Hess, H.2
Fuhrmann, G.3
-
70
-
-
0025968796
-
Intracellular leucine zipper interactions suggest c-Myc hetero-oligomerization
-
Dang CV, Barrett J, Villa-Garcia M et al. Intracellular leucine zipper interactions suggest c-Myc hetero-oligomerization. Mol Cell Biol 1991; 11(2):954-962.
-
(1991)
Mol Cell Biol
, vol.11
, Issue.2
, pp. 954-962
-
-
Dang, C.V.1
Barrett, J.2
Villa-Garcia, M.3
-
71
-
-
0025763419
-
Max: A helix-loop-helix zipper protein that forms a sequence-specific DNA-binding complex with Myc
-
Blackwood EM, Eisenman RN. Max: a helix-loop-helix zipper protein that forms a sequence-specific DNA-binding complex with Myc. Science 1991; 251(4998):1211-1217.
-
(1991)
Science
, vol.251
, Issue.4998
, pp. 1211-1217
-
-
Blackwood, E.M.1
Eisenman, R.N.2
-
72
-
-
0025829169
-
Association of Myn, the murine homolog of max, with c-Myc stimulates methylation-sensitive DNA binding and ras cotransformation
-
Prendergast GC, Lawe D, Ziff EB. Association of Myn, the murine homolog of max, with c-Myc stimulates methylation-sensitive DNA binding and ras cotransformation. Cell 1991; 65(3):395-407.
-
(1991)
Cell
, vol.65
, Issue.3
, pp. 395-407
-
-
Prendergast, G.C.1
Lawe, D.2
Ziff, E.B.3
-
73
-
-
0032493894
-
The novel ATM-related protein TRRAP is an essential cofactor for the c-Myc and E2F oncoproteins
-
McMahon SB, Van Buskirk HA, Dugan KA et al. The novel ATM-related protein TRRAP is an essential cofactor for the c-Myc and E2F oncoproteins. Cell 1998; 94(3):363-374.
-
(1998)
Cell
, vol.94
, Issue.3
, pp. 363-374
-
-
McMahon, S.B.1
Van Buskirk, H.A.2
Dugan, K.A.3
-
74
-
-
0026099022
-
The MYC protein activates transcription of the alpha-prothymosin gene
-
Eilers M, Schirm S, Bishop JM. The MYC protein activates transcription of the alpha-prothymosin gene. EMBO J 1991; 10(1):133-141.
-
(1991)
EMBO J
, vol.10
, Issue.1
, pp. 133-141
-
-
Eilers, M.1
Schirm, S.2
Bishop, J.M.3
-
75
-
-
0027078137
-
An embryonically expressed gene is a target for c-Myc regulation via the c-Myc-binding sequence
-
Benvenisty N, Leder A, Kuo A et al. An embryonically expressed gene is a target for c-Myc regulation via the c-Myc-binding sequence. Genes Dev 1992; 6(12B):2513-2523.
-
(1992)
Genes Dev
, vol.6
, Issue.12
, pp. 2513-2523
-
-
Benvenisty, N.1
Leder, A.2
Kuo, A.3
-
76
-
-
0028905563
-
A yer DE, Lawrence QA, Eisenman RN
-
A yer DE, Lawrence QA, Eisenman RN. Mad-Max transcriptional repression is mediated by ternary complex formation with mammalian homologs of yeast repressor Sin3. Cell 1995; 80(5):767-776.
-
(1995)
Cell
, vol.80
, Issue.5
, pp. 767-776
-
-
-
77
-
-
0027431276
-
A switch from Myc:Max to Mad:Max heterocomplexes accompanies monocyte/ macrophage differentiation
-
Ayer DE, Eisenman RN. A switch from Myc:Max to Mad:Max heterocomplexes accompanies monocyte/ macrophage differentiation. Genes Dev 1993; 7(11):2110-2119.
-
(1993)
Genes Dev
, vol.7
, Issue.11
, pp. 2110-2119
-
-
Ayer, D.E.1
Eisenman, R.N.2
-
78
-
-
0027408096
-
Mad: A heterodimeric partner for Max that antagonizes Myc transcriptional activity
-
Ayer DE, Kretzner L, Eisenman RN. Mad: A heterodimeric partner for Max that antagonizes Myc transcriptional activity. Cell 1993; 72(2):211-222.
-
(1993)
Cell
, vol.72
, Issue.2
, pp. 211-222
-
-
Ayer, D.E.1
Kretzner, L.2
Eisenman, R.N.3
-
79
-
-
0032905924
-
C-Myc target genes involved in cell growth, apoptosis and metabolism
-
Dang CV. c-Myc target genes involved in cell growth, apoptosis and metabolism. Mol Cell Biol 1999; 19(1):1-11.
-
(1999)
Mol Cell Biol
, vol.19
, Issue.1
, pp. 1-11
-
-
Dang, C.V.1
-
80
-
-
0035904463
-
Function and regulation of the transcription factors of the Myc/Max/Mad network
-
Luscher B. Function and regulation of the transcription factors of the Myc/Max/Mad network. Gene 2001; 277(1-2):1-14.
-
(2001)
Gene
, vol.277
, Issue.1-2
, pp. 1-14
-
-
Luscher, B.1
-
81
-
-
0035881691
-
Regulation of cyclin D2 gene expression by the Myc/Max/Mad network: Myc-dependent TRRAP recruitment and histone acetylation at the cyclin D2 promoter
-
Bouchard C, Dittrich O, Kiermaier A et al. Regulation of cyclin D2 gene expression by the Myc/Max/Mad network: Myc-dependent TRRAP recruitment and histone acetylation at the cyclin D2 promoter. Genes Dev 2001; 15(16):2042-2047.
-
(2001)
Genes Dev
, vol.15
, Issue.16
, pp. 2042-2047
-
-
Bouchard, C.1
Dittrich, O.2
Kiermaier, A.3
-
82
-
-
0026546365
-
CHOP, a novel developmentally regulated nuclear protein that dimerizes with transcription factors C/EBP and LAP and functions as a dominant-negative inhibitor of gene transcription
-
Ron D, Habener JF. CHOP, a novel developmentally regulated nuclear protein that dimerizes with transcription factors C/EBP and LAP and functions as a dominant-negative inhibitor of gene transcription. Genes Dev 1992; 6(3):439-453.
-
(1992)
Genes Dev
, vol.6
, Issue.3
, pp. 439-453
-
-
Ron, D.1
Habener, J.F.2
-
83
-
-
1842843855
-
Roles of CHOP/GADD153 in endoplasmic reticulum stress
-
Oyadomari S, Mori M. Roles of CHOP/GADD153 in endoplasmic reticulum stress. Cell Death Differ 2004; 11(4):381-389.
-
(2004)
Cell Death Differ
, vol.11
, Issue.4
, pp. 381-389
-
-
Oyadomari, S.1
Mori, M.2
-
84
-
-
0029130373
-
Inhibition of adipogenesis by the stress-induced protein CHOP (Gadd153)
-
Batchvarova N, Wang XZ, Ron D. Inhibition of adipogenesis by the stress-induced protein CHOP (Gadd153). EMBO J 1995; 14(19):4654-4661.
-
(1995)
EMBO J
, vol.14
, Issue.19
, pp. 4654-4661
-
-
Batchvarova, N.1
Wang, X.Z.2
Ron, D.3
-
85
-
-
0033749370
-
Role of C/EBP homologous protein (CHOP-10) in the programmed activation of CCAAT/ enhancer-binding protein-beta during adipogenesis
-
Tang QQ, Lane MD. Role of C/EBP homologous protein (CHOP-10) in the programmed activation of CCAAT/ enhancer-binding protein-beta during adipogenesis. Proc Natl Acad Sci USA 2000; 97(23):12446-12450.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, Issue.23
, pp. 12446-12450
-
-
Tang, Q.Q.1
Lane, M.D.2
-
86
-
-
27744469307
-
Effect of serum on the down-regulation of CHOP-10 during differentiation of 3T3-L1 preadipocytes
-
Huang H, Lane MD, Tang QQ. Effect of serum on the down-regulation of CHOP-10 during differentiation of 3T3-L1 preadipocytes. Biochem Biophys Res Commun 2005; 338(2):1185-1188.
-
(2005)
Biochem Biophys Res Commun
, vol.338
, Issue.2
, pp. 1185-1188
-
-
Huang, H.1
Lane, M.D.2
Tang, Q.Q.3
-
87
-
-
0025238437
-
The protein Id: A negative regulator of helix-loop-helix DNA binding proteins
-
Benezra R, Davis RL, Lockshon D et al. The protein Id: A negative regulator of helix-loop-helix DNA binding proteins. Cell 1990; 61(1):49-59.
-
(1990)
Cell
, vol.61
, Issue.1
, pp. 49-59
-
-
Benezra, R.1
Davis, R.L.2
Lockshon, D.3
-
88
-
-
0344845415
-
BMP induction of Id proteins suppresses differentiation and sustains embryonic stem cell self-renewal in collaboration with STAT3
-
Ying QL, Nichols J, Chambers I et al. BMP induction of Id proteins suppresses differentiation and sustains embryonic stem cell self-renewal in collaboration with STAT3. Cell 2003; 115(3):281-292.
-
(2003)
Cell
, vol.115
, Issue.3
, pp. 281-292
-
-
Ying, Q.L.1
Nichols, J.2
Chambers, I.3
-
89
-
-
23144464750
-
Id family of helix-loop-helix proteins in cancer
-
Perk J, Iavarone A, Benezra R. Id family of helix-loop-helix proteins in cancer. Nat Rev Cancer 2005; 5(8):603-614.
-
(2005)
Nat Rev Cancer
, vol.5
, Issue.8
, pp. 603-614
-
-
Perk, J.1
Iavarone, A.2
Benezra, R.3
-
90
-
-
33751160409
-
ID proteins as targets in cancer and tools in neurobiology
-
Iavarone A, Lasorella A. ID proteins as targets in cancer and tools in neurobiology. Trends Mol Med 2006; 12(12):588-594.
-
(2006)
Trends Mol Med
, vol.12
, Issue.12
, pp. 588-594
-
-
Iavarone, A.1
Lasorella, A.2
-
91
-
-
0042347689
-
Id proteins in development, cell cycle and cancer
-
Ruzinova MB, Benezra R. Id proteins in development, cell cycle and cancer. Trends Cell Biol 2003; 13(8):410-418.
-
(2003)
Trends Cell Biol
, vol.13
, Issue.8
, pp. 410-418
-
-
Ruzinova, M.B.1
Benezra, R.2
-
92
-
-
0032483558
-
Solution structure of a TBP-TAF(II)230 complex: Protein mimicry of the minor groove surface of the TATA box unwound by TBP
-
Liu D, Ishima R, Tong KI et al. Solution structure of a TBP-TAF(II)230 complex: Protein mimicry of the minor groove surface of the TATA box unwound by TBP. Cell 1998; 94(5):573-583.
-
(1998)
Cell
, vol.94
, Issue.5
, pp. 573-583
-
-
Liu, D.1
Ishima, R.2
Tong, K.I.3
-
93
-
-
0034785593
-
TAF(II)170 interacts with the concave surface of TATA-binding protein to inhibit its DNA binding activity
-
Pereira LA, van der Knaap JA, van den Boom V et al. TAF(II)170 interacts with the concave surface of TATA-binding protein to inhibit its DNA binding activity. Mol Cell Biol 2001; 21(21):7523-7534.
-
(2001)
Mol Cell Biol
, vol.21
, Issue.21
, pp. 7523-7534
-
-
Pereira, L.A.1
Van Der Knaap, J.A.2
Van Den Boom, V.3
-
94
-
-
0031883573
-
The yeast TAF145 inhibitory domain and TFIIA competitively bind to TATA-binding protein
-
Kokubo T, Swanson MJ, Nishikawa JI et al. The yeast TAF145 inhibitory domain and TFIIA competitively bind to TATA-binding protein. Mol Cell Biol 1998; 18(2):1003-1012.
-
(1998)
Mol Cell Biol
, vol.18
, Issue.2
, pp. 1003-1012
-
-
Kokubo, T.1
Swanson, M.J.2
Nishikawa, J.I.3
-
95
-
-
0031935594
-
Cloning and biochemical characterization of TAF-172, a human homolog of yeast Mot1
-
Chicca JJ 2nd, Auble DT, Pugh BF. Cloning and biochemical characterization of TAF-172, a human homolog of yeast Mot1. Mol Cell Biol 1998; 18(3):1701-1710.
-
(1998)
Mol Cell Biol
, vol.18
, Issue.3
, pp. 1701-1710
-
-
Chicca II, J.J.1
Auble, D.T.2
Pugh, B.F.3
-
96
-
-
0035854374
-
Crystal structure of negative cofactor 2 recognizing the TBP-DNA transcription complex
-
Kamada K, Shu F, Chen H et al. Crystal structure of negative cofactor 2 recognizing the TBP-DNA transcription complex. Cell 2001; 106(1):71-81.
-
(2001)
Cell
, vol.106
, Issue.1
, pp. 71-81
-
-
Kamada, K.1
Shu, F.2
Chen, H.3
-
97
-
-
0033179986
-
A human nuclear-localized chaperone that regulates dimerization, DNA binding and transcriptional activity of bZIP proteins
-
Virbasius CM, Wagner S, Green MR. A human nuclear-localized chaperone that regulates dimerization, DNA binding and transcriptional activity of bZIP proteins. Mol Cell 1999; 4(2):219-228.
-
(1999)
Mol Cell
, vol.4
, Issue.2
, pp. 219-228
-
-
Virbasius, C.M.1
Wagner, S.2
Green, M.R.3
-
98
-
-
0343938844
-
Nuclear factor y (NF-Y) and cellular senescence
-
Matuoka K, Yu Chen K. Nuclear factor Y (NF-Y) and cellular senescence. Exp Cell Res 1999; 253(2):365-371.
-
(1999)
Exp Cell Res
, vol.253
, Issue.2
, pp. 365-371
-
-
Matuoka, K.1
Yu Chen, K.2
-
99
-
-
0033613912
-
NF-Y binding to twin CCAAT boxes: Role of Q-rich domains and histone fold helices
-
Liberati C, di Silvio A, Ottolenghi S et al. NF-Y binding to twin CCAAT boxes: Role of Q-rich domains and histone fold helices. J Mol Biol 1999; 285(4):1441-1455.
-
(1999)
J Mol Biol
, vol.285
, Issue.4
, pp. 1441-1455
-
-
Liberati, C.1
Di Silvio, A.2
Ottolenghi, S.3
-
100
-
-
0030737867
-
CCAAT binding NF-Y-TBP interactions: NF-YB and NF-YC require short domains adjacent to their histone fold motifs for association with TBP basic residues
-
Bellorini M, Lee DK, Dantonel JC et al. CCAAT binding NF-Y-TBP interactions: NF-YB and NF-YC require short domains adjacent to their histone fold motifs for association with TBP basic residues. Nucleic Acids Res 1997; 25(11):2174-2181.
-
(1997)
Nucleic Acids Res
, vol.25
, Issue.11
, pp. 2174-2181
-
-
Bellorini, M.1
Lee, D.K.2
Dantonel, J.C.3
-
101
-
-
0025755922
-
Heat shock factor and the heat shock response
-
Sorger PK. Heat shock factor and the heat shock response. Cell 1991; 65(3):363-366.
-
(1991)
Cell
, vol.65
, Issue.3
, pp. 363-366
-
-
Sorger, P.K.1
-
102
-
-
0033546171
-
Modulation of human heat shock factor trimerization by the linker domain
-
Liu PC, Thiele DJ. Modulation of human heat shock factor trimerization by the linker domain. J Biol Chem 1999; 274(24):17219-17225.
-
(1999)
J Biol Chem
, vol.274
, Issue.24
, pp. 17219-17225
-
-
Liu, P.C.1
Thiele, D.J.2
-
103
-
-
0029564954
-
Heat shock transcription factors: Structure and regulation
-
Wu C. Heat shock transcription factors: Structure and regulation. Annu Rev Cell Dev Biol 1995; 11:441-469.
-
(1995)
Annu Rev Cell Dev Biol
, vol.11
, pp. 441-469
-
-
Wu, C.1
|