메뉴 건너뛰기




Volumn 7, Issue 7, 2012, Pages 733-757

Confirming the functional importance of a protein-DNA interaction

Author keywords

[No Author keywords available]

Indexed keywords

BETA INTERFERON; DNA BINDING PROTEIN; INTERFERON REGULATORY FACTOR 3; INTERFERON REGULATORY FACTOR 7; DNA;

EID: 84864428085     PISSN: 19403402     EISSN: 15596095     Source Type: Journal    
DOI: 10.1101/pdb.top070060     Document Type: Article
Times cited : (11)

References (91)
  • 2
    • 84934439207 scopus 로고    scopus 로고
    • Identifying siRNA induced off-targets by microarray analysis
    • Anderson E, Boese Q, Khvorova A, Karpilow J. 2008. Identifying siRNA induced off-targets by microarray analysis. Methods Mol Biol 442: 45-63.
    • (2008) Methods Mol Biol , vol.442 , pp. 45-63
    • Anderson, E.1    Boese, Q.2    Khvorova, A.3    Karpilow, J.4
  • 3
    • 0037069417 scopus 로고    scopus 로고
    • Retroviral delivery of small interfering RNA into primary cells
    • Barton GM, Medzhitov R. 2002. Retroviral delivery of small interfering RNA into primary cells. Proc Natl Acad Sci 99: 14943-14945.
    • (2002) Proc Natl Acad Sci , vol.99 , pp. 14943-14945
    • Barton, G.M.1    Medzhitov, R.2
  • 4
    • 33646805064 scopus 로고    scopus 로고
    • T-bet binding to newly identified target gene promoters is cell type-independent but results in variable context-dependent functional effects
    • Beima KM, Miazgowicz MM, Lewis MD, Yan PS, Huang TH, Weinmann AS. 2006. T-bet binding to newly identified target gene promoters is cell type-independent but results in variable context-dependent functional effects. J Biol Chem 281: 11992-12000.
    • (2006) J Biol Chem , vol.281 , pp. 11992-12000
    • Beima, K.M.1    Miazgowicz, M.M.2    Lewis, M.D.3    Yan, P.S.4    Huang, T.H.5    Weinmann, A.S.6
  • 5
    • 0025238437 scopus 로고
    • The protein Id: A negative regulator of helix-loop-helix binding proteins
    • Benezra R, Davis RL, Lockshon D, Turner DL, Weintraub H. 1990. The protein Id: A negative regulator of helix-loop-helix binding proteins. Cell 61: 49-59.
    • (1990) Cell , vol.61 , pp. 49-59
    • Benezra, R.1    Davis, R.L.2    Lockshon, D.3    Turner, D.L.4    Weintraub, H.5
  • 6
    • 0030949835 scopus 로고    scopus 로고
    • Myc versus USF: Discrimination at the cad gene is determined by core promoter elements
    • Boyd KE, Farnham PJ. 1997. Myc versus USF: Discrimination at the cad gene is determined by core promoter elements. Mol Cell Biol 17: 2529-2537.
    • (1997) Mol Cell Biol , vol.17 , pp. 2529-2537
    • Boyd, K.E.1    Farnham, P.J.2
  • 7
    • 0032506243 scopus 로고    scopus 로고
    • c-Myc target gene specificity is determined by a post-DNA-binding mechanism
    • Boyd KE, Wells J, Gutman J, Bartley SM, Farnham PJ. 1998. c-Myc target gene specificity is determined by a post-DNA-binding mechanism. Proc Natl Acad Sci 95: 13887-13892.
    • (1998) Proc Natl Acad Sci , vol.95 , pp. 13887-13892
    • Boyd, K.E.1    Wells, J.2    Gutman, J.3    Bartley, S.M.4    Farnham, P.J.5
  • 8
    • 0038111991 scopus 로고    scopus 로고
    • C/EBPb regulation in lipo-poly-sac-charide-stimulated macrophages
    • Bradley MN, Zhou L, Smale ST. 2003. C/EBPb regulation in lipo-poly-sac-charide-stimulated macrophages. Mol Cell Biol 23: 4841-4858.
    • (2003) Mol Cell Biol , vol.23 , pp. 4841-4858
    • Bradley, M.N.1    Zhou, L.2    Smale, S.T.3
  • 9
    • 0032004967 scopus 로고    scopus 로고
    • A good antisense molecule is hard to find
    • Branch AD. 1998. A good antisense molecule is hard to find. Trends Biochem Sci 23: 45-50.
    • (1998) Trends Biochem Sci , vol.23 , pp. 45-50
    • Branch, A.D.1
  • 10
    • 0027192267 scopus 로고
    • Transcriptional silencing in yeast is associated with reduced nucleosome acety-lation
    • Braunstein M, Rose AB, Holmes SG, Allis CD, Broach JR. 1993. Transcriptional silencing in yeast is associated with reduced nucleosome acety-lation. Genes Dev 7: 592-604.
    • (1993) Genes Dev , vol.7 , pp. 592-604
    • Braunstein, M.1    Rose, A.B.2    Holmes, S.G.3    Allis, C.D.4    Broach, J.R.5
  • 11
    • 0037134020 scopus 로고    scopus 로고
    • A system for stable expression of short interfering RNAs in mammalian cells
    • Brummelkamp TR, Bernards R, Agami R. 2002. A system for stable expression of short interfering RNAs in mammalian cells. Science 296: 550-553.
    • (2002) Science , vol.296 , pp. 550-553
    • Brummelkamp, T.R.1    Bernards, R.2    Agami, R.3
  • 12
    • 0024328536 scopus 로고
    • Altering the genome by homologous recombination
    • Capecchi MR. 1989. Altering the genome by homologous recombination. Science 244: 1288-1292.
    • (1989) Science , vol.244 , pp. 1288-1292
    • Capecchi, M.R.1
  • 13
    • 19544371373 scopus 로고    scopus 로고
    • Gene targeting in mice: Functional analysis of the mammalian genome for the twenty-first century
    • Capecchi MR. 2005. Gene targeting in mice: Functional analysis of the mammalian genome for the twenty-first century. Nat Rev Genet 6: 507-512.
    • (2005) Nat Rev Genet , vol.6 , pp. 507-512
    • Capecchi, M.R.1
  • 14
    • 0029954710 scopus 로고    scopus 로고
    • Transcriptional control of lymphoid development: Lessons from gene targeting
    • Clevers HC, Grosschedl R. 1996. Transcriptional control of lymphoid development: Lessons from gene targeting. Immunol Today 17: 336-343.
    • (1996) Immunol Today , vol.17 , pp. 336-343
    • Clevers, H.C.1    Grosschedl, R.2
  • 15
    • 33747799289 scopus 로고    scopus 로고
    • Enhancing and confirming the specificity of RNAi experiments
    • Cullen BR. 2006. Enhancing and confirming the specificity of RNAi experiments. Nat Methods 3: 677-681.
    • (2006) Nat Methods , vol.3 , pp. 677-681
    • Cullen, B.R.1
  • 16
    • 0025936177 scopus 로고
    • A liver-enriched transcriptional activator protein, LAP, and a transcriptional inhibitory protein, LIP, are translated from the same mRNA
    • Descombes P, Schibler U. 1991. A liver-enriched transcriptional activator protein, LAP, and a transcriptional inhibitory protein, LIP, are translated from the same mRNA. Cell 67: 569-579.
    • (1991) Cell , vol.67 , pp. 569-579
    • Descombes, P.1    Schibler, U.2
  • 17
    • 43249114058 scopus 로고    scopus 로고
    • Repression of gene expression by unphosphorylated NF-B p65 through epigenetic mechanisms
    • Dong J, Jimi E, Zhong H, Hayden MS, Ghosh S. 2008. Repression of gene expression by unphosphorylated NF-B p65 through epigenetic mechanisms. Genes Dev 22: 1159-1173.
    • (2008) Genes Dev , vol.22 , pp. 1159-1173
    • Dong, J.1    Jimi, E.2    Zhong, H.3    Hayden, M.S.4    Ghosh, S.5
  • 18
    • 0020529697 scopus 로고
    • Isolation of transcription factors that discrim- inate between different promoters recognized by RNA polymerase II
    • Dynan WS, Tjian R. 1983a. Isolation of transcription factors that discrim- inate between different promoters recognized by RNA polymerase II. Cell 32: 669-680.
    • (1983) Cell , vol.32 , pp. 669-680
    • Dynan, W.S.1    Tjian, R.2
  • 19
    • 0021058853 scopus 로고
    • The promoter-specific transcription factor Sp1 binds to upstream sequences in the SV40 early promoter
    • Dynan WS, Tjian R. 1983b. The promoter-specific transcription factor Sp1 binds to upstream sequences in the SV40 early promoter. Cell 35: 79-87.
    • (1983) Cell , vol.35 , pp. 79-87
    • Dynan, W.S.1    Tjian, R.2
  • 20
    • 0029073345 scopus 로고
    • Pip, a novel IRF family member, is a lymphoid-specific, PU.1-dependent transcriptional activator
    • Eisenbeis CF, Singh H, Storb U. 1995. Pip, a novel IRF family member, is a lymphoid-specific, PU.1-dependent transcriptional activator. Genes Dev 9: 1377-1387.
    • (1995) Genes Dev , vol.9 , pp. 1377-1387
    • Eisenbeis, C.F.1    Singh, H.2    Storb, U.3
  • 21
    • 0035863097 scopus 로고    scopus 로고
    • RNA interference is mediated by 21- and 22-nucleotide RNAs
    • Elbashir SM, Lendeckel W, Tuschl T. 2001a. RNA interference is mediated by 21- and 22-nucleotide RNAs. Genes Dev 15: 188-200.
    • (2001) Genes Dev , vol.15 , pp. 188-200
    • Elbashir, S.M.1    Lendeckel, W.2    Tuschl, T.3
  • 22
    • 0035942736 scopus 로고    scopus 로고
    • Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells
    • Elbashir SM, Harborth J, Lendeckel W, Yalcin A, Weber K, Tuschl T. 2001b. Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells. Nature 411: 494-498.
    • (2001) Nature , vol.411 , pp. 494-498
    • Elbashir, S.M.1    Harborth, J.2    Lendeckel, W.3    Yalcin, A.4    Weber, K.5    Tuschl, T.6
  • 23
    • 0036351317 scopus 로고    scopus 로고
    • Analysis of gene function in somatic mammalian cells using small interfering RNAs
    • Elbashir SM, Harborth J, Weber K, Tuschl T. 2002. Analysis of gene function in somatic mammalian cells using small interfering RNAs. Methods 26: 199-213.
    • (2002) Methods , vol.26 , pp. 199-213
    • Elbashir, S.M.1    Harborth, J.2    Weber, K.3    Tuschl, T.4
  • 24
    • 0027230072 scopus 로고
    • Both LyF-1 and an Ets protein interact with a critical promoter element in the murine terminal transferase gene
    • Ernst P, Hahm K, Smale ST. 1993. Both LyF-1 and an Ets protein interact with a critical promoter element in the murine terminal transferase gene. Mol Cell Biol 13: 2982-2992.
    • (1993) Mol Cell Biol , vol.13 , pp. 2982-2992
    • Ernst, P.1    Hahm, K.2    Smale, S.T.3
  • 26
    • 0025084605 scopus 로고
    • Single cell assay of a transcription factor reveals a threshold in transcription activated by signals emanating from the T-cell antigen receptor
    • Fiering S, Northrop JP, Nolan GP, Mattila PS, Crabtree GR, Herzenberg LA. 1990. Single cell assay of a transcription factor reveals a threshold in transcription activated by signals emanating from the T-cell antigen receptor. Genes Dev 4: 1823-1834.
    • (1990) Genes Dev , vol.4 , pp. 1823-1834
    • Fiering, S.1    Northrop, J.P.2    Nolan, G.P.3    Mattila, P.S.4    Crabtree, G.R.5    Herzenberg, L.A.6
  • 27
    • 0032545933 scopus 로고    scopus 로고
    • Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
    • Fire A, Xu S, Montgomery MK, Kostas SA, Driver SE, Mello CC. 1998. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391: 806-811.
    • (1998) Nature , vol.391 , pp. 806-811
    • Fire, A.1    Xu, S.2    Montgomery, M.K.3    Kostas, S.A.4    Driver, S.E.5    Mello, C.C.6
  • 29
    • 0026451087 scopus 로고
    • Ikaros, an early lymphoid- specific transcription factor and a putative mediator for T cell commitment
    • Georgopoulos K, Moore DD, Derfler B. 1992. Ikaros, an early lymphoid- specific transcription factor and a putative mediator for T cell commitment. Science 258: 808-812.
    • (1992) Science , vol.258 , pp. 808-812
    • Georgopoulos, K.1    Moore, D.D.2    Derfler, B.3
  • 30
    • 0032530169 scopus 로고    scopus 로고
    • Altered DNA-binding specificity mutants of EKLF and Sp1 show that EKLF is an activator of the -globin locus control region in vivo
    • Gillemans N, Tewari R, Lindeboom F, Rottier R, de Wit T, Wijgerde M, Grosveld F, Philipsen S. 1998. Altered DNA-binding specificity mutants of EKLF and Sp1 show that EKLF is an activator of the -globin locus control region in vivo. Genes Dev 12: 2863-2873.
    • (1998) Genes Dev , vol.12 , pp. 2863-2873
    • Gillemans, N.1    Tewari, R.2    Lindeboom, F.3    Rottier, R.4    de Wit, T.5    Wijgerde, M.6    Grosveld, F.7    Philipsen, S.8
  • 31
    • 1042272180 scopus 로고
    • Detecting protein-DNA interactions in vivo: Distribution of RNA polymerase on specific bacterial genes
    • Gilmour DS, Lis JT. 1984. Detecting protein-DNA interactions in vivo: Distribution of RNA polymerase on specific bacterial genes. Proc Natl Acad Sci 81: 4275-4279.
    • (1984) Proc Natl Acad Sci , vol.81 , pp. 4275-4279
    • Gilmour, D.S.1    Lis, J.T.2
  • 32
    • 0021831222 scopus 로고
    • In vivo interactions of RNA polymerase II with genes of Drosophila melanogaster
    • Gilmour DS, Lis JT. 1985. In vivo interactions of RNA polymerase II with genes of Drosophila melanogaster. Mol Cell Biol 5: 2009-2018.
    • (1985) Mol Cell Biol , vol.5 , pp. 2009-2018
    • Gilmour, D.S.1    Lis, J.T.2
  • 33
    • 0022817308 scopus 로고
    • RNA polymerase II interacts with the promoter region of the noninduced hsp70 gene in Drosophila melanogaster cells
    • Gilmour DS, Lis JT. 1986. RNA polymerase II interacts with the promoter region of the noninduced hsp70 gene in Drosophila melanogaster cells. Mol Cell Biol 6: 3984-3989.
    • (1986) Mol Cell Biol , vol.6 , pp. 3984-3989
    • Gilmour, D.S.1    Lis, J.T.2
  • 34
    • 0028059099 scopus 로고
    • Deletion of a DNA polymerase B gene segment in T cells using cell type-specific gene targeting
    • Gu H, Marth JD, Orban PC, Mossmann H, Rajewsky K. 1994. Deletion of a DNA polymerase B gene segment in T cells using cell type-specific gene targeting. Science 265: 103-106.
    • (1994) Science , vol.265 , pp. 103-106
    • Gu, H.1    Marth, J.D.2    Orban, P.C.3    Mossmann, H.4    Rajewsky, K.5
  • 35
    • 0028152483 scopus 로고
    • The lymphoid transcription factor LyF-1 is encoded by specific, alternatively-spliced mRNAs derived from the Ikaros gene
    • Hahm K, Ernst P, Lo K, Kim GS, Turck C, Smale ST. 1994. The lymphoid transcription factor LyF-1 is encoded by specific, alternatively-spliced mRNAs derived from the Ikaros gene. Mol Cell Biol 14: 7111-7123.
    • (1994) Mol Cell Biol , vol.14 , pp. 7111-7123
    • Hahm, K.1    Ernst, P.2    Lo, K.3    Kim, G.S.4    Turck, C.5    Smale, S.T.6
  • 36
    • 3042767202 scopus 로고    scopus 로고
    • MicroRNSa: Small RNAs with a big role in generegulation
    • He L, Hannon GJ. 2004. MicroRNSa: Small RNAs with a big role in generegulation. Nat Rev Genet 5: 522-531.
    • (2004) Nat Rev Genet , vol.5 , pp. 522-531
    • He, L.1    Hannon, G.J.2
  • 37
    • 0033064319 scopus 로고    scopus 로고
    • Mapping DNA interaction sites of chromo- somal proteins using immunoprecipitation and polymerase chain reaction
    • Hecht A, Grunstein M. 1999. Mapping DNA interaction sites of chromo- somal proteins using immunoprecipitation and polymerase chain reaction. Methods Enzymol 304: 399-414.
    • (1999) Methods Enzymol , vol.304 , pp. 399-414
    • Hecht, A.1    Grunstein, M.2
  • 38
    • 0029817763 scopus 로고    scopus 로고
    • Spreading of transcription- al repressor SIR3 from telomeric heterochromatin
    • Hecht A, Strahl-Bolsinger S, Grunstein M. 1996. Spreading of transcription- al repressor SIR3 from telomeric heterochromatin. Nature 383: 92-96.
    • (1996) Nature , vol.383 , pp. 92-96
    • Hecht, A.1    Strahl-Bolsinger, S.2    Grunstein, M.3
  • 39
    • 7444252292 scopus 로고    scopus 로고
    • Expression profiles frame the promoter specificity dilemma of the ETS family of transcription factors
    • Hollenhorst PC, Jones DA, Graves BJ. 2004. Expression profiles frame the promoter specificity dilemma of the ETS family of transcription factors. Nucleic Acids Res 32: 5693-5702.
    • (2004) Nucleic Acids Res , vol.32 , pp. 5693-5702
    • Hollenhorst, P.C.1    Jones, D.A.2    Graves, B.J.3
  • 40
    • 34547641224 scopus 로고    scopus 로고
    • Genome-wide analyses reveal properties of redundant and specific promoter occupancy within the ETS gene family
    • Hollenhorst PC, Shah AA, Hopkins C, Graves BJ. 2007. Genome-wide analyses reveal properties of redundant and specific promoter occupancy within the ETS gene family. Genes Dev 21: 1882-1894.
    • (2007) Genes Dev , vol.21 , pp. 1882-1894
    • Hollenhorst, P.C.1    Shah, A.A.2    Hopkins, C.3    Graves, B.J.4
  • 41
    • 0029958777 scopus 로고    scopus 로고
    • Characterization of the cooperative function of inhibitory sequences in Ets-1
    • Jonsen MD, Petersen JM, Xu QP, Graves BJ. 1996. Characterization of the cooperative function of inhibitory sequences in Ets-1. Mol Cell Biol 16: 2065-2073.
    • (1996) Mol Cell Biol , vol.16 , pp. 2065-2073
    • Jonsen, M.D.1    Petersen, J.M.2    Xu, Q.P.3    Graves, B.J.4
  • 42
    • 0023663884 scopus 로고
    • Isolation of cDNA encoding transcription factor Sp1 and functional analysis of the DNA binding domain
    • Kadonaga JT, Carner KR, Masiarz FR, Tjian R. 1987. Isolation of cDNA encoding transcription factor Sp1 and functional analysis of the DNA binding domain. Cell 51: 1079-1090.
    • (1987) Cell , vol.51 , pp. 1079-1090
    • Kadonaga, J.T.1    Carner, K.R.2    Masiarz, F.R.3    Tjian, R.4
  • 43
    • 0031310825 scopus 로고    scopus 로고
    • The mechanism of transcriptional synergy of an in vitro assembled interferon- enhanceosome
    • Kim TK, Maniatis M. 1997. The mechanism of transcriptional synergy of an in vitro assembled interferon- enhanceosome. Mol Cell 1: 119-129.
    • (1997) Mol Cell , vol.1 , pp. 119-129
    • Kim, T.K.1    Maniatis, M.2
  • 44
    • 33847036990 scopus 로고    scopus 로고
    • Strategies for silencing human disease using RNA interference
    • Kim DH, Rossi JJ. 2007. Strategies for silencing human disease using RNA interference. Nat Rev Genet 8: 173-184.
    • (2007) Nat Rev Genet , vol.8 , pp. 173-184
    • Kim, D.H.1    Rossi, J.J.2
  • 46
    • 0030754089 scopus 로고    scopus 로고
    • Differential interactions of Id proteins with basic helix-loop-helix transcription factors
    • Langlands K, Yin X, Anand G, Prochownik EV. 1997. Differential interactions of Id proteins with basic helix-loop-helix transcription factors. J Biol Chem 272: 19785-19793.
    • (1997) J Biol Chem , vol.272 , pp. 19785-19793
    • Langlands, K.1    Yin, X.2    Anand, G.3    Prochownik, E.V.4
  • 47
    • 4243754537 scopus 로고    scopus 로고
    • Confirming specificity of RNAi in mammalian cells
    • Lassus P, Rodriguez J, Lazebnik Y. 2002. Confirming specificity of RNAi in mammalian cells. Sci STKE 147: PL13.
    • (2002) Sci STKE , vol.147
    • Lassus, P.1    Rodriguez, J.2    Lazebnik, Y.3
  • 48
    • 0032958092 scopus 로고    scopus 로고
    • Distinct factors regulate the murine RAG-2 promoter in B and T cell lines
    • Lauring J, Schlissel MS. 1999. Distinct factors regulate the murine RAG-2 promoter in B and T cell lines. Mol Cell Biol 19: 2601-2612.
    • (1999) Mol Cell Biol , vol.19 , pp. 2601-2612
    • Lauring, J.1    Schlissel, M.S.2
  • 50
    • 0032580207 scopus 로고    scopus 로고
    • Allosteric effects of DNA on transcriptional regulators
    • Lefstin JA, Yamamoto KR. 1998. Allosteric effects of DNA on transcriptional regulators. Nature 392: 885-888.
    • (1998) Nature , vol.392 , pp. 885-888
    • Lefstin, J.A.1    Yamamoto, K.R.2
  • 51
    • 0031975840 scopus 로고    scopus 로고
    • Compensatory energetic relationships between upstream activators and the RNA polymerase II general transcription machinery
    • Lehman AM, Ellwood KB, Middleton BE, Carey M. 1998. Compensatory energetic relationships between upstream activators and the RNA polymerase II general transcription machinery. J Biol Chem 273: 932-939.
    • (1998) J Biol Chem , vol.273 , pp. 932-939
    • Lehman, A.M.1    Ellwood, K.B.2    Middleton, B.E.3    Carey, M.4
  • 52
    • 0035099393 scopus 로고    scopus 로고
    • Are all DNA binding and transcription regulation by an activator physiologically relevant?
    • Li Q, Johnston SA. 2001. Are all DNA binding and transcription regulation by an activator physiologically relevant? Mol Cell Biol 21: 2467-2474.
    • (2001) Mol Cell Biol , vol.21 , pp. 2467-2474
    • Li, Q.1    Johnston, S.A.2
  • 53
    • 0024852591 scopus 로고
    • Transcriptional activity of the human thyme-dine kinase gene determined by a method using the polymerase chain reaction and an intron-specific probe
    • Lipston KE, Baserga R. 1989. Transcriptional activity of the human thyme-dine kinase gene determined by a method using the polymerase chain reaction and an intron-specific probe. Proc Natl Acad Sci 86: 9774-9777.
    • (1989) Proc Natl Acad Sci , vol.86 , pp. 9774-9777
    • Lipston, K.E.1    Baserga, R.2
  • 54
    • 0025943384 scopus 로고
    • LyF-1, a transcriptional regulator that interacts with a novel class of promoters for lymphocyte-specific genes
    • Lo K, Landau NR, Smale ST. 1991. LyF-1, a transcriptional regulator that interacts with a novel class of promoters for lymphocyte-specific genes. Mol Cell Biol 11: 5229-5243.
    • (1991) Mol Cell Biol , vol.11 , pp. 5229-5243
    • Lo, K.1    Landau, N.R.2    Smale, S.T.3
  • 57
    • 0026011312 scopus 로고
    • Comparison of constitutive and inducible transcriptional enhancement mediated by B-related sequences: Modulation of activity in B cells by human T-cell leukemia virus type I tax gene
    • Mauxion F, Jamieson C, Yoshida M, Arai K, Sen R. 1991. Comparison of constitutive and inducible transcriptional enhancement mediated by B-related sequences: Modulation of activity in B cells by human T-cell leukemia virus type I tax gene. Proc Natl Acad Sci 88: 2141-2145.
    • (1991) Proc Natl Acad Sci , vol.88 , pp. 2141-2145
    • Mauxion, F.1    Jamieson, C.2    Yoshida, M.3    Arai, K.4    Sen, R.5
  • 58
    • 0036245628 scopus 로고    scopus 로고
    • ′ overhangs efficiently suppress targeted gene expression in mammalian cells
    • ′ overhangs efficiently suppress targeted gene expression in mammalian cells. Nat Biotechnol 20: 497-500.
    • (2002) Nat Biotechnol , vol.20 , pp. 497-500
    • Miyagishi, M.1    Taira, K.2
  • 59
    • 0031883962 scopus 로고    scopus 로고
    • Redundant regulation of T cell differentiation and TCR gene expression by the transcription factors LEF-1 and TCF-1
    • Okamura RM, Sigvardsson M, Galceran J, Verbeek S, Clevers H, Grosschedl R. 1998. Redundant regulation of T cell differentiation and TCR gene expression by the transcription factors LEF-1 and TCF-1. Immu- nity 8: 11-20.
    • (1998) Immu- Nity , vol.8 , pp. 11-20
    • Okamura, R.M.1    Sigvardsson, M.2    Galceran, J.3    Verbeek, S.4    Clevers, H.5    Grosschedl, R.6
  • 60
    • 0030058221 scopus 로고    scopus 로고
    • Design of a C/ EBP-specific, dominant-negative bZIP protein with both inhibitory and gain-of-function properties
    • Olive M, Williams SC, Dezan C, Johnson PF, Vinson C. 1996. Design of a C/ EBP-specific, dominant-negative bZIP protein with both inhibitory and gain-of-function properties. J Biol Chem 271: 2040-2047.
    • (1996) J Biol Chem , vol.271 , pp. 2040-2047
    • Olive, M.1    Williams, S.C.2    Dezan, C.3    Johnson, P.F.4    Vinson, C.5
  • 61
    • 0027139910 scopus 로고
    • Mapping Polycomb-repressed domains in the bithorax complex using in vivo formaldehyde cross-linked chromatin
    • Orlando V, Paro R. 1993. Mapping Polycomb-repressed domains in the bithorax complex using in vivo formaldehyde cross-linked chromatin. Cell 75: 1187-1198.
    • (1993) Cell , vol.75 , pp. 1187-1198
    • Orlando, V.1    Paro, R.2
  • 62
    • 0031080378 scopus 로고    scopus 로고
    • Analysis of chromatin structure by in vivo formaldehyde cross-linking
    • Orlando V, Strutt H, Paro R. 1997. Analysis of chromatin structure by in vivo formaldehyde cross-linking. Methods 11: 205-214.
    • (1997) Methods , vol.11 , pp. 205-214
    • Orlando, V.1    Strutt, H.2    Paro, R.3
  • 63
    • 40649125064 scopus 로고    scopus 로고
    • RNA interference in mammalian cell systems
    • Paddison PJ. 2008. RNA interference in mammalian cell systems. Curr Top Microbiol Immunol 320: 1-19.
    • (2008) Curr Top Microbiol Immunol , vol.320 , pp. 1-19
    • Paddison, P.J.1
  • 64
    • 0037089589 scopus 로고    scopus 로고
    • Short hairpin RNAs (shRNAs) induce sequence-specific silencing in mammalian cells
    • Paddison PJ, Caudy AA, Bernstein E, Hannon GJ, Conklin DS. 2002. Short hairpin RNAs (shRNAs) induce sequence-specific silencing in mammalian cells. Genes Dev 16: 948-958.
    • (2002) Genes Dev , vol.16 , pp. 948-958
    • Paddison, P.J.1    Caudy, A.A.2    Bernstein, E.3    Hannon, G.J.4    Conklin, D.S.5
  • 65
    • 34250017968 scopus 로고    scopus 로고
    • An atomic model of the interferon- enhanceosome
    • Panne D, Maniatis T, Harrison SC. 2007. An atomic model of the interferon- enhanceosome. Cell 129: 1111-1123.
    • (2007) Cell , vol.129 , pp. 1111-1123
    • Panne, D.1    Maniatis, T.2    Harrison, S.C.3
  • 66
    • 0032971444 scopus 로고    scopus 로고
    • Virus infection leads to localized hyperacety- lation of histones H3 and H4 at the IFN- promoter
    • Parekh BS, Maniatis T. 1999. Virus infection leads to localized hyperacety- lation of histones H3 and H4 at the IFN- promoter. Mol Cell 3: 125-129.
    • (1999) Mol Cell , vol.3 , pp. 125-129
    • Parekh, B.S.1    Maniatis, T.2
  • 67
    • 0036251639 scopus 로고    scopus 로고
    • Effective expression of small interfering RNA in human cells
    • Paul CP, Good PD, Winer I, Engelke DR. 2002. Effective expression of small interfering RNA in human cells. Nat Biotechnol 20: 505-508.
    • (2002) Nat Biotechnol , vol.20 , pp. 505-508
    • Paul, C.P.1    Good, P.D.2    Winer, I.3    Engelke, D.R.4
  • 68
    • 33747761923 scopus 로고    scopus 로고
    • On the art of identifying effective and specific siRNAs
    • Pei Y, Tuschl T. 2006. On the art of identifying effective and specific siRNAs. Nat Methods 3: 670-676.
    • (2006) Nat Methods , vol.3 , pp. 670-676
    • Pei, Y.1    Tuschl, T.2
  • 70
    • 0030872393 scopus 로고    scopus 로고
    • Multiple control elements mediate activation of the murine and human IL-12 p40 promoters: Evidence of functional synergy between C/EBP and Rel pro- teins
    • Plevy SE, Gemberling J, Hsu S, Dorner AJ, Smale ST. 1997. Multiple control elements mediate activation of the murine and human IL-12 p40 promoters: Evidence of functional synergy between C/EBP and Rel pro- teins. Mol Cell Biol 17: 4572-4588.
    • (1997) Mol Cell Biol , vol.17 , pp. 4572-4588
    • Plevy, S.E.1    Gemberling, J.2    Hsu, S.3    Dorner, A.J.4    Smale, S.T.5
  • 73
    • 0027980201 scopus 로고
    • TGF- inhibits both endotoxin-induced prostaglandin synthesis and expression of the TIS10/prostaglandin synthase 2 gene in murine macrophag- es
    • Reddy ST, Gilbert RS, Xie W, Luner S, Herschman HR. 1994. TGF- inhibits both endotoxin-induced prostaglandin synthesis and expression of the TIS10/prostaglandin synthase 2 gene in murine macrophag- es. J Leukoc Biol 55: 192-200.
    • (1994) J Leukoc Biol , vol.55 , pp. 192-200
    • Reddy, S.T.1    Gilbert, R.S.2    Xie, W.3    Luner, S.4    Herschman, H.R.5
  • 74
    • 0346750970 scopus 로고    scopus 로고
    • Dominant-negative mutants of helix-loop-helix proteins: Transcriptional inhibition
    • Rishi V, Vinson C. 2003. Dominant-negative mutants of helix-loop-helix proteins: Transcriptional inhibition. Methods Enzymol 370: 454-466.
    • (2003) Methods Enzymol , vol.370 , pp. 454-466
    • Rishi, V.1    Vinson, C.2
  • 75
    • 0032560117 scopus 로고    scopus 로고
    • Tran- scriptional repression by UME6 involves deacetylation of lysine 5 of histone H4 by RPD3
    • Rundlett SE, Carmen AA, Suka N, Turner BM, Grunstein M. 1998. Tran- scriptional repression by UME6 involves deacetylation of lysine 5 of histone H4 by RPD3. Nature 392: 831-835.
    • (1998) Nature , vol.392 , pp. 831-835
    • Rundlett, S.E.1    Carmen, A.A.2    Suka, N.3    Turner, B.M.4    Grunstein, M.5
  • 76
    • 33746556993 scopus 로고    scopus 로고
    • A brief history of RNAi: The silence of the genes
    • Sen GL, Blau HM. 2006. A brief history of RNAi: The silence of the genes. FASEB J 20: 1293-1299.
    • (2006) FASEB J , vol.20 , pp. 1293-1299
    • Sen, G.L.1    Blau, H.M.2
  • 77
    • 0030710206 scopus 로고    scopus 로고
    • Using altered specificity Oct-1 and Oct-2 mutants to analyze the regulation of immunoglobulin gene transcription
    • Shah PC, Bertolino E, Singh H. 1997. Using altered specificity Oct-1 and Oct-2 mutants to analyze the regulation of immunoglobulin gene transcription. EMBO J 16: 7105-7117.
    • (1997) EMBO J , vol.16 , pp. 7105-7117
    • Shah, P.C.1    Bertolino, E.2    Singh, H.3
  • 78
    • 0022389290 scopus 로고
    • Insertion of DNA sequences into the human chromosomal -globin locus by homologous recombination
    • Smithies O, Gregg RG, Boggs SS, Koralewski MA, Kucherlapati RS. 1985. Insertion of DNA sequences into the human chromosomal -globin locus by homologous recombination. Nature 317: 230-234.
    • (1985) Nature , vol.317 , pp. 230-234
    • Smithies, O.1    Gregg, R.G.2    Boggs, S.S.3    Koralewski, M.A.4    Kucherlapati, R.S.5
  • 79
    • 33747779678 scopus 로고    scopus 로고
    • Expressing short hairpin RNAs in vivo
    • Snøve O Jr, Rossi JJ. 2006. Expressing short hairpin RNAs in vivo. Nat Methods 3: 689-695.
    • (2006) Nat Methods , vol.3 , pp. 689-695
    • Snøve Jr., O.1    Rossi, J.J.2
  • 80
    • 0001473216 scopus 로고
    • Formaldehyde-mediated DNA-protein crosslinking: A probe for in vivo chromatin structures
    • Solomon MJ, Varshavsky A. 1985. Formaldehyde-mediated DNA-protein crosslinking: A probe for in vivo chromatin structures. Proc Natl Acad Sci 82: 6470-6474.
    • (1985) Proc Natl Acad Sci , vol.82 , pp. 6470-6474
    • Solomon, M.J.1    Varshavsky, A.2
  • 81
    • 0023948705 scopus 로고
    • Mapping protein-DNA inter- actions in vivo with formaldehyde: Evidence that histone H4 is retained on a highly transcribed gene
    • Solomon MJ, Larsen PL, Varshavsky A. 1988. Mapping protein-DNA inter- actions in vivo with formaldehyde: Evidence that histone H4 is retained on a highly transcribed gene. Cell 53: 937-947.
    • (1988) Cell , vol.53 , pp. 937-947
    • Solomon, M.J.1    Larsen, P.L.2    Varshavsky, A.3
  • 82
    • 0031923263 scopus 로고    scopus 로고
    • How to design an antisense oligodeoxynucleotide experi- ment: A consensus approach
    • Stein CA. 1998. How to design an antisense oligodeoxynucleotide experi- ment: A consensus approach. Antisense Nucleic Acid Drug Dev 8: 129-132.
    • (1998) Antisense Nucleic Acid Drug Dev , vol.8 , pp. 129-132
    • Stein, C.A.1
  • 83
    • 34250618419 scopus 로고    scopus 로고
    • Off-targeting and other non-specific effects of RNAi ex- periments in mammalian cells
    • Svoboda P. 2007. Off-targeting and other non-specific effects of RNAi ex- periments in mammalian cells. Curr Opin Mol Ther 9: 248-257.
    • (2007) Curr Opin Mol Ther , vol.9 , pp. 248-257
    • Svoboda, P.1
  • 84
    • 0029617947 scopus 로고
    • Virus induction of human IFN gene-expression requires the assembly of an enhanceosome
    • Thanos D, Maniatis T. 1995a. Virus induction of human IFN gene-expression requires the assembly of an enhanceosome. Cell 83: 1091-1100.
    • (1995) Cell , vol.83 , pp. 1091-1100
    • Thanos, D.1    Maniatis, T.2
  • 85
    • 0028986193 scopus 로고
    • NF-B: A lesson in family values
    • Thanos D, Maniatis T. 1995b. NF-B: A lesson in family values. Cell 80: 529-532.
    • (1995) Cell , vol.80 , pp. 529-532
    • Thanos, D.1    Maniatis, T.2
  • 86
    • 0023646810 scopus 로고
    • Site-directed mutagenesis by gene targeting in mouse embryo-derived stem cells
    • Thomas KR, Capecchi MR. 1987. Site-directed mutagenesis by gene targeting in mouse embryo-derived stem cells. Cell 51: 503-512.
    • (1987) Cell , vol.51 , pp. 503-512
    • Thomas, K.R.1    Capecchi, M.R.2
  • 87
    • 0027945654 scopus 로고
    • Development of several organs that require induc- tive epithelial-mesenchymal interactions is impaired in LEF-1-deficient mice
    • van Genderen C, Okamura RM, Farinas I, Quo RG, Parslow TG, Bruhn L, Grosschedl R. 1994. Development of several organs that require induc- tive epithelial-mesenchymal interactions is impaired in LEF-1-deficient mice. Genes Dev 8: 2691-2703.
    • (1994) Genes Dev , vol.8 , pp. 2691-2703
    • van Genderen, C.1    Okamura, R.M.2    Farinas, I.3    Quo, R.G.4    Parslow, T.G.5    Bruhn, L.6    Grosschedl, R.7
  • 89
    • 0027982060 scopus 로고
    • Two homeo domain proteins bind with similar specificity to a wide range of DNA sites in Drosophila embryos
    • Walter J, Dever CA, Biggin MD. 1994. Two homeo domain proteins bind with similar specificity to a wide range of DNA sites in Drosophila embryos. Genes Dev 8: 1678-1692.
    • (1994) Genes Dev , vol.8 , pp. 1678-1692
    • Walter, J.1    Dever, C.A.2    Biggin, M.D.3
  • 90
    • 0032015647 scopus 로고    scopus 로고
    • Virus infection induces the assembly of coordinately activated transcription factors on the IFN- enhancer in vivo
    • Wathelet MG, Lin CH, Parekh BS, Ronco LV, Howley PM, Maniatis T. 1998. Virus infection induces the assembly of coordinately activated transcription factors on the IFN- enhancer in vivo. Mol Cell 1: 507-518.
    • (1998) Mol Cell , vol.1 , pp. 507-518
    • Wathelet, M.G.1    Lin, C.H.2    Parekh, B.S.3    Ronco, L.V.4    Howley, P.M.5    Maniatis, T.6
  • 91
    • 33747778686 scopus 로고    scopus 로고
    • Tuning silence: Conditional systems for RNA interference
    • Wiznerowicz M, Szulc J, Trono D. 2006. Tuning silence: Conditional systems for RNA interference. Nat Methods 3: 682-688.
    • (2006) Nat Methods , vol.3 , pp. 682-688
    • Wiznerowicz, M.1    Szulc, J.2    Trono, D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.