-
1
-
-
3042784274
-
Generating mutant libraries using error-prone PCR
-
Cirino PC, Mayer KM, Umeno D, (2003) Generating mutant libraries using error-prone PCR. Methods Mol Biol 231: 3-9.
-
(2003)
Methods Mol Biol
, vol.231
, pp. 3-9
-
-
Cirino, P.C.1
Mayer, K.M.2
Umeno, D.3
-
2
-
-
0018967477
-
Evolution of a new enzymatic function by recombination within a gene
-
Hall BG, Zuzel T, (1980) Evolution of a new enzymatic function by recombination within a gene. Proc Natl Acad Sci USA 77: 3529-3533.
-
(1980)
Proc Natl Acad Sci USA
, vol.77
, pp. 3529-3533
-
-
Hall, B.G.1
Zuzel, T.2
-
3
-
-
0028050350
-
Rapid evolution of a protein in vitro by DNA shuffling
-
Stemmer WP, (1994) Rapid evolution of a protein in vitro by DNA shuffling. Nature 370: 389-391.
-
(1994)
Nature
, vol.370
, pp. 389-391
-
-
Stemmer, W.P.1
-
4
-
-
0031909113
-
Molecular evolution by staggered extension process (StEP) in vitro recombination
-
Zhao H, Giver L, Shao Z, A holter JA, Arnold FH, (1998) Molecular evolution by staggered extension process (StEP) in vitro recombination. Nat Biotechnol 16: 258-261.
-
(1998)
Nat Biotechnol
, vol.16
, pp. 258-261
-
-
Zhao, H.1
Giver, L.2
Shao, Z.3
Aholter, J.A.4
Arnold, F.H.5
-
5
-
-
0035014185
-
Directed evolution of proteins by exon shuffling
-
Kolkman JA, Stemmer WP, (2001) Directed evolution of proteins by exon shuffling. Nat Biotechnol 19: 423-428.
-
(2001)
Nat Biotechnol
, vol.19
, pp. 423-428
-
-
Kolkman, J.A.1
Stemmer, W.P.2
-
6
-
-
65849183178
-
Golden gate shuffling: a one-pot DNA shuffling method based on type IIs restriction enzymes
-
Engler C, Gruetzner R, Kandzia R, Marillonnet S, (2009) Golden gate shuffling: a one-pot DNA shuffling method based on type IIs restriction enzymes. PLoS ONE 4: e5553.
-
(2009)
PLoS ONE
, vol.4
-
-
Engler, C.1
Gruetzner, R.2
Kandzia, R.3
Marillonnet, S.4
-
7
-
-
79955534060
-
A system for the continuous directed evolution of biomolecules
-
Esvelt KM, Carlson JC, Liu DR, (2011) A system for the continuous directed evolution of biomolecules. Nature 472: 499-503.
-
(2011)
Nature
, vol.472
, pp. 499-503
-
-
Esvelt, K.M.1
Carlson, J.C.2
Liu, D.R.3
-
8
-
-
24744453533
-
The promise and peril of continuous in vitro evolution
-
Johns GC, Joyce GF, (2005) The promise and peril of continuous in vitro evolution. J Mol Evol 61: 253-263.
-
(2005)
J Mol Evol
, vol.61
, pp. 253-263
-
-
Johns, G.C.1
Joyce, G.F.2
-
9
-
-
0029859408
-
Random circular permutation of genes and expressed polypeptide chains: application of the method to the catalytic chains of aspartate transcarbamoylase
-
Graf R, Schachman HK, (1996) Random circular permutation of genes and expressed polypeptide chains: application of the method to the catalytic chains of aspartate transcarbamoylase. Proc Natl Acad Sci USA 93: 11591-11596.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 11591-11596
-
-
Graf, R.1
Schachman, H.K.2
-
10
-
-
84859833076
-
Circular Permutation in the Ω-Loop of TEM-1 β-lactamase Results in Improved Activity and Altered Substrate Specificity
-
Guntas G, Kanwar M, Ostermeier M, (2012) Circular Permutation in the Ω-Loop of TEM-1 β-lactamase Results in Improved Activity and Altered Substrate Specificity. PLoS ONE 7: e35998.
-
(2012)
PLoS ONE
, vol.7
-
-
Guntas, G.1
Kanwar, M.2
Ostermeier, M.3
-
11
-
-
3543116602
-
Enzyme assays for high-throughput screening
-
Goddard JP, Reymond JL, (2004) Enzyme assays for high-throughput screening. Curr Opin Biotechnol 15: 314-322.
-
(2004)
Curr Opin Biotechnol
, vol.15
, pp. 314-322
-
-
Goddard, J.P.1
Reymond, J.L.2
-
12
-
-
78650121749
-
Development of an in vitro compartmentalization screen for high-throughput directed evolution of [FeFe] hydrogenases
-
Stapleton JA, Swartz JR, (2010) Development of an in vitro compartmentalization screen for high-throughput directed evolution of [FeFe] hydrogenases. PLoS ONE 5: e15275.
-
(2010)
PLoS ONE
, vol.5
-
-
Stapleton, J.A.1
Swartz, J.R.2
-
13
-
-
0035807809
-
Enzyme-like proteins by computational design
-
Bolon DN, Mayo SL, (2001) Enzyme-like proteins by computational design. Proc Natl Acad Sci USA 98: 14274-14279.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 14274-14279
-
-
Bolon, D.N.1
Mayo, S.L.2
-
14
-
-
40449116114
-
De novo computational design of retro-aldol enzymes
-
Jiang L, Altho EA, Clemente FR, Doyle L, Rothlisberger D, et al. (2008) De novo computational design of retro-aldol enzymes. Science 319: 1387-1391.
-
(2008)
Science
, vol.319
, pp. 1387-1391
-
-
Jiang, L.1
Altho, E.A.2
Clemente, F.R.3
Doyle, L.4
Rothlisberger, D.5
-
15
-
-
73549117481
-
An artificial di-iron oxo-protein with phenol oxidase activity
-
Faiella M, Andreozzi C, de Rosales RT, Pavone V, Maglio O, et al. (2009) An artificial di-iron oxo-protein with phenol oxidase activity. Nat Chem Biol 5: 882-884.
-
(2009)
Nat Chem Biol
, vol.5
, pp. 882-884
-
-
Faiella, M.1
Andreozzi, C.2
de Rosales, R.T.3
Pavone, V.4
Maglio, O.5
-
16
-
-
77954811495
-
Computational design of an enzyme catalyst for a stereoselective bimolecular Diels-Alder reaction
-
Siegel JB, Zanghellini A, Lovick HM, Kiss G, Lambert AR, et al. (2010) Computational design of an enzyme catalyst for a stereoselective bimolecular Diels-Alder reaction. Science 329: 309-313.
-
(2010)
Science
, vol.329
, pp. 309-313
-
-
Siegel, J.B.1
Zanghellini, A.2
Lovick, H.M.3
Kiss, G.4
Lambert, A.R.5
-
17
-
-
43449098518
-
Kemp elimination catalysts by computational enzyme design
-
Rothlisberger D, Khersonsky O, Wollacott AM, Jiang L, DeChancie J, et al. (2008) Kemp elimination catalysts by computational enzyme design. Nature 453: 190-195.
-
(2008)
Nature
, vol.453
, pp. 190-195
-
-
Rothlisberger, D.1
Khersonsky, O.2
Wollacott, A.M.3
Jiang, L.4
DeChancie, J.5
-
18
-
-
34248567845
-
Iterative saturation mutagenesis (ISM) for rapid directed evolution of functional enzymes
-
Reetz MT, Carballeira JD, (2007) Iterative saturation mutagenesis (ISM) for rapid directed evolution of functional enzymes. Nat Protoc 2: 891-903.
-
(2007)
Nat Protoc
, vol.2
, pp. 891-903
-
-
Reetz, M.T.1
Carballeira, J.D.2
-
19
-
-
0025146741
-
Saturation site-directed mutagenesis of thymidylate synthase
-
Climie S, Ruiz-Perez L, Gonzalez-Pacanowska D, Prapunwattana P, Cho SW, et al. (1990) Saturation site-directed mutagenesis of thymidylate synthase. J Biol Chem 265: 18776-18779.
-
(1990)
J Biol Chem
, vol.265
, pp. 18776-18779
-
-
Climie, S.1
Ruiz-Perez, L.2
Gonzalez-Pacanowska, D.3
Prapunwattana, P.4
Cho, S.W.5
-
20
-
-
33747234745
-
Expanding the substrate scope of enzymes: combining mutations obtained by CASTing
-
Reetz MT, Carballeira JD, Peyralans J, Hobenreich H, Maichele A, et al. (2006) Expanding the substrate scope of enzymes: combining mutations obtained by CASTing. Chemistry 12: 6031-6038.
-
(2006)
Chemistry
, vol.12
, pp. 6031-6038
-
-
Reetz, M.T.1
Carballeira, J.D.2
Peyralans, J.3
Hobenreich, H.4
Maichele, A.5
-
22
-
-
36749042777
-
Latent evolutionary potentials under the neutral mutational drift of an enzyme
-
Amitai G, Gupta RD, Taw k DS, (2007) Latent evolutionary potentials under the neutral mutational drift of an enzyme. HFSP J 1: 67-78.
-
(2007)
HFSP J
, vol.1
, pp. 67-78
-
-
Amitai, G.1
Gupta, R.D.2
Taw k, D.S.3
-
23
-
-
41649116075
-
A structural model of latent evolutionary potentials underlying neutral networks in proteins
-
Wroe R, Chan HS, Bornberg-Bauer E, (2007) A structural model of latent evolutionary potentials underlying neutral networks in proteins. HFSP J 1: 79-87.
-
(2007)
HFSP J
, vol.1
, pp. 79-87
-
-
Wroe, R.1
Chan, H.S.2
Bornberg-Bauer, E.3
-
24
-
-
33751525692
-
New algorithms and an in silico benchmark for computational enzyme design
-
Zanghellini A, Jiang L, Wollacott AM, Cheng G, Meiler J, et al. (2006) New algorithms and an in silico benchmark for computational enzyme design. Protein Sci 15: 2785-2794.
-
(2006)
Protein Sci
, vol.15
, pp. 2785-2794
-
-
Zanghellini, A.1
Jiang, L.2
Wollacott, A.M.3
Cheng, G.4
Meiler, J.5
-
25
-
-
0030793767
-
De novo protein design: fully automated sequence selection
-
Dahiyat BI, Mayo SL, (1997) De novo protein design: fully automated sequence selection. Science 278: 82-87.
-
(1997)
Science
, vol.278
, pp. 82-87
-
-
Dahiyat, B.I.1
Mayo, S.L.2
-
26
-
-
70349330137
-
Automated scaffold selection for enzyme design
-
Malisi C, Kohlbacher O, Hocker B, (2009) Automated scaffold selection for enzyme design. Proteins 77: 74-83.
-
(2009)
Proteins
, vol.77
, pp. 74-83
-
-
Malisi, C.1
Kohlbacher, O.2
Hocker, B.3
-
27
-
-
46449106372
-
The minimized dead-end elimination criterion and its appli-cation to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles
-
Georgiev I, Lilien RH, Donald BR, (2008) The minimized dead-end elimination criterion and its appli-cation to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles. J Comput Chem 29: 1527-1542.
-
(2008)
J Comput Chem
, vol.29
, pp. 1527-1542
-
-
Georgiev, I.1
Lilien, R.H.2
Donald, B.R.3
-
28
-
-
0034663722
-
The penultimate rotamer library
-
Lovell SC, Word JM, Richardson JS, Richardson DC, (2000) The penultimate rotamer library. Proteins 40: 389-408.
-
(2000)
Proteins
, vol.40
, pp. 389-408
-
-
Lovell, S.C.1
Word, J.M.2
Richardson, J.S.3
Richardson, D.C.4
-
29
-
-
82955246714
-
Active site detection by spatial conformity and electrostatic analysis-unravelling a proteolytic function in shrimp alkaline phosphatase
-
Chakraborty S, Minda R, Salaye L, Bhattacharjee SK, Rao BJ, (2011) Active site detection by spatial conformity and electrostatic analysis-unravelling a proteolytic function in shrimp alkaline phosphatase. PLoS ONE 6: e28470.
-
(2011)
PLoS ONE
, vol.6
-
-
Chakraborty, S.1
Minda, R.2
Salaye, L.3
Bhattacharjee, S.K.4
Rao, B.J.5
-
30
-
-
0029944652
-
The catalytic mechanism of beta-lactamases: NMR titration of an active-site lysine residue of the TEM-1 enzyme
-
Damblon C, Raquet X, Lian LY, Lamotte-Brasseur J, Fonze E, et al. (1996) The catalytic mechanism of beta-lactamases: NMR titration of an active-site lysine residue of the TEM-1 enzyme. Proc Natl Acad Sci USA 93: 1747-1752.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 1747-1752
-
-
Damblon, C.1
Raquet, X.2
Lian, L.Y.3
Lamotte-Brasseur, J.4
Fonze, E.5
-
31
-
-
84862682287
-
Enumerating pathways of proton abstraction based on a spatial and electrostatic analysis of residues in the catalytic site
-
Chakraborty S, (2012) Enumerating pathways of proton abstraction based on a spatial and electrostatic analysis of residues in the catalytic site. PLoS ONE, In Press.
-
(2012)
PLoS ONE, In Press
-
-
Chakraborty, S.1
-
32
-
-
84857124305
-
A measure of the promiscuity of proteins and characteristics of residues in the vicinity of the catalytic site that regulate promiscuity
-
Chakraborty S, Rao BJ, (2012) A measure of the promiscuity of proteins and characteristics of residues in the vicinity of the catalytic site that regulate promiscuity. PLoS ONE 7: e32011.
-
(2012)
PLoS ONE
, vol.7
-
-
Chakraborty, S.1
Rao, B.J.2
-
33
-
-
0017272554
-
Enzyme recruitment in evolution of new function
-
Jensen RA, (1976) Enzyme recruitment in evolution of new function. Annu Rev Microbiol 30: 409-425.
-
(1976)
Annu Rev Microbiol
, vol.30
, pp. 409-425
-
-
Jensen, R.A.1
-
35
-
-
77956925998
-
Messy biology and the origins of evolutionary innovations
-
Taw k DS, (2010) Messy biology and the origins of evolutionary innovations. Nat Chem Biol 6: 692-696.
-
(2010)
Nat Chem Biol
, vol.6
, pp. 692-696
-
-
Taw k, D.S.1
-
36
-
-
79953326533
-
Exploiting models of molecular evolution to efficiently direct protein engineering
-
Cole MF, Gaucher EA, (2011) Exploiting models of molecular evolution to efficiently direct protein engineering. J Mol Evol 72: 193-203.
-
(2011)
J Mol Evol
, vol.72
, pp. 193-203
-
-
Cole, M.F.1
Gaucher, E.A.2
-
37
-
-
0026049801
-
Serine beta-lactamases and penicillin-binding proteins
-
Ghuysen JM, (1991) Serine beta-lactamases and penicillin-binding proteins. Annu Rev Microbiol 45: 37-67.
-
(1991)
Annu Rev Microbiol
, vol.45
, pp. 37-67
-
-
Ghuysen, J.M.1
-
38
-
-
2942562249
-
Evolution of the serine beta-lactamases: past, present and future
-
Hall BG, Barlow M, (2004) Evolution of the serine beta-lactamases: past, present and future. Drug Resist Updat 7: 111-123.
-
(2004)
Drug Resist Updat
, vol.7
, pp. 111-123
-
-
Hall, B.G.1
Barlow, M.2
-
39
-
-
0033082703
-
The beta-lactamase cycle: a tale of selective pressure and bacterial ingenuity
-
Matagne A, Dubus A, Galleni M, Frere JM, (1999) The beta-lactamase cycle: a tale of selective pressure and bacterial ingenuity. Nat Prod Rep 16: 1-19.
-
(1999)
Nat Prod Rep
, vol.16
, pp. 1-19
-
-
Matagne, A.1
Dubus, A.2
Galleni, M.3
Frere, J.M.4
-
40
-
-
0032985224
-
Escherichia coli mutants lacking all possible combinations of eight penicillin binding proteins: viability, characteristics, and implications for peptidoglycan synthesis
-
Denome SA, Elf PK, Henderson TA, Nelson DE, Young KD, (1999) Escherichia coli mutants lacking all possible combinations of eight penicillin binding proteins: viability, characteristics, and implications for peptidoglycan synthesis. J Bacteriol 181: 3981-3993.
-
(1999)
J Bacteriol
, vol.181
, pp. 3981-3993
-
-
Denome, S.A.1
Elf, P.K.2
Henderson, T.A.3
Nelson, D.E.4
Young, K.D.5
-
41
-
-
84859574738
-
Antibiotic resistance is prevalent in an isolated cave microbiome
-
Bhullar K, Waglechner N, Pawlowski A, Koteva K, Banks ED, et al. (2012) Antibiotic resistance is prevalent in an isolated cave microbiome. PLoS ONE 7: e34953.
-
(2012)
PLoS ONE
, vol.7
-
-
Bhullar, K.1
Waglechner, N.2
Pawlowski, A.3
Koteva, K.4
Banks, E.D.5
-
42
-
-
0036227417
-
Increase of the deacylation rate of PBP2x from Streptococcus pneumoniae by single point mutations mimicking the class A beta-lactamases
-
Chesnel L, Zapun A, Mouz N, Dideberg O, Vernet T, (2002) Increase of the deacylation rate of PBP2x from Streptococcus pneumoniae by single point mutations mimicking the class A beta-lactamases. Eur J Biochem 269: 1678-1683.
-
(2002)
Eur J Biochem
, vol.269
, pp. 1678-1683
-
-
Chesnel, L.1
Zapun, A.2
Mouz, N.3
Dideberg, O.4
Vernet, T.5
-
43
-
-
58549119937
-
Structure of PBP-A from Ther-mosynechococcus elongatus, a penicillin-binding protein closely related to class A beta-lactamases
-
Urbach C, Evrard C, Pudzaitis V, Fastrez J, Soumillion P, et al. (2009) Structure of PBP-A from Ther-mosynechococcus elongatus, a penicillin-binding protein closely related to class A beta-lactamases. J Mol Biol 386: 109-120.
-
(2009)
J Mol Biol
, vol.386
, pp. 109-120
-
-
Urbach, C.1
Evrard, C.2
Pudzaitis, V.3
Fastrez, J.4
Soumillion, P.5
-
44
-
-
0032032930
-
Catalytic properties of class A beta-lactamases: efficiency and diversity
-
Matagne A, Lamotte-Brasseur J, Frere JM, (1998) Catalytic properties of class A beta-lactamases: efficiency and diversity. Biochem J 330 (Pt 2): 581-598.
-
(1998)
Biochem J
, vol.330
, Issue.2
, pp. 581-598
-
-
Matagne, A.1
Lamotte-Brasseur, J.2
Frere, J.M.3
-
45
-
-
0347362788
-
Crystal structure of wild-type penicillin-binding protein 5 from Escherichia coli: implications for deacylation of the acyl-enzyme complex
-
Nicholas RA, Krings S, Tomberg J, Nicola G, Davies C, (2003) Crystal structure of wild-type penicillin-binding protein 5 from Escherichia coli: implications for deacylation of the acyl-enzyme complex. J Biol Chem 278: 52826-52833.
-
(2003)
J Biol Chem
, vol.278
, pp. 52826-52833
-
-
Nicholas, R.A.1
Krings, S.2
Tomberg, J.3
Nicola, G.4
Davies, C.5
-
46
-
-
0032502332
-
Role of the omega-loop in the activity, substrate specificity, and structure of class A beta-lactamase
-
Banerjee S, Pieper U, Kapadia G, Pannell LK, Herzberg O, (1998) Role of the omega-loop in the activity, substrate specificity, and structure of class A beta-lactamase. Biochemistry 37: 3286-3296.
-
(1998)
Biochemistry
, vol.37
, pp. 3286-3296
-
-
Banerjee, S.1
Pieper, U.2
Kapadia, G.3
Pannell, L.K.4
Herzberg, O.5
-
47
-
-
77954797329
-
Biocatalytic asymmetric synthesis of chiral amines from ketones applied to sitagliptin manufacture
-
Savile CK, Janey JM, Mundor EC, Moore JC, Tam S, et al. (2010) Biocatalytic asymmetric synthesis of chiral amines from ketones applied to sitagliptin manufacture. Science 329: 305-309.
-
(2010)
Science
, vol.329
, pp. 305-309
-
-
Savile, C.K.1
Janey, J.M.2
Mundor, E.C.3
Moore, J.C.4
Tam, S.5
-
48
-
-
62649153772
-
Computational structure-based redesign of enzyme activity
-
Chen CY, Georgiev I, Anderson AC, Donald BR, (2009) Computational structure-based redesign of enzyme activity. Proc Natl Acad Sci USA 106: 3764-3769.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 3764-3769
-
-
Chen, C.Y.1
Georgiev, I.2
Anderson, A.C.3
Donald, B.R.4
-
49
-
-
84856021987
-
Combinatorial reshaping of the Candida antarctica lipase A substrate pocket for enantioselectivity using an extremely condensed library
-
Sandstrom AG, Wikmark Y, Engstrom K, Nyhlen J, Backvall JE, (2012) Combinatorial reshaping of the Candida antarctica lipase A substrate pocket for enantioselectivity using an extremely condensed library. Proc Natl Acad Sci USA 109: 78-83.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 78-83
-
-
Sandstrom, A.G.1
Wikmark, Y.2
Engstrom, K.3
Nyhlen, J.4
Backvall, J.E.5
-
50
-
-
0037194629
-
Discovery of further pyrrolidine trans-lactams as inhibitors of human neutrophil elastase (HNE) with potential as development candidates and the crystal structure of HNE complexed with an inhibitor (GW475151)
-
Macdonald SJ, Dowle MD, Harrison LA, Clarke GD, Inglis GG, et al. (2002) Discovery of further pyrrolidine trans-lactams as inhibitors of human neutrophil elastase (HNE) with potential as development candidates and the crystal structure of HNE complexed with an inhibitor (GW475151). J Med Chem 45: 3878-3890.
-
(2002)
J Med Chem
, vol.45
, pp. 3878-3890
-
-
Macdonald, S.J.1
Dowle, M.D.2
Harrison, L.A.3
Clarke, G.D.4
Inglis, G.G.5
-
51
-
-
84857926420
-
An engineered innate immune defense protects grapevines from Pierce disease
-
Dandekar AM, Gouran H, Ibanez AM, Uratsu SL, Aguero CB, et al. (2012) An engineered innate immune defense protects grapevines from Pierce disease. Proc Natl Acad Sci USA 109: 3721-3725.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 3721-3725
-
-
Dandekar, A.M.1
Gouran, H.2
Ibanez, A.M.3
Uratsu, S.L.4
Aguero, C.B.5
-
52
-
-
0031588722
-
NMR solution structure of the pathogenesis-related protein P14a
-
Fernandez C, Szyperski T, Bruyere T, Ramage P, Mosinger E, et al. (1997) NMR solution structure of the pathogenesis-related protein P14a. J Mol Biol 266: 576-593.
-
(1997)
J Mol Biol
, vol.266
, pp. 576-593
-
-
Fernandez, C.1
Szyperski, T.2
Bruyere, T.3
Ramage, P.4
Mosinger, E.5
-
53
-
-
0027490930
-
Plant 'pathogenesis-related' proteins and their role in defense against pathogens
-
Stintzi A, Heitz T, Prasad V, Wiedemann-Merdinoglu S, Kau mann S, et al. (1993) Plant 'pathogenesis-related' proteins and their role in defense against pathogens. Biochimie 75: 687-706.
-
(1993)
Biochimie
, vol.75
, pp. 687-706
-
-
Stintzi, A.1
Heitz, T.2
Prasad, V.3
Wiedemann-Merdinoglu, S.4
Kau mann, S.5
-
54
-
-
0017280367
-
Distribution of elastase-like enzyme activity among snake venoms
-
Bernick JJ, Simpson W, (1976) Distribution of elastase-like enzyme activity among snake venoms. Comp Biochem Physiol, B 54: 51-54.
-
(1976)
Comp Biochem Physiol, B
, vol.54
, pp. 51-54
-
-
Bernick, J.J.1
Simpson, W.2
-
55
-
-
0041731780
-
Isolation and characterization of a cone snail protease with homology to CRISP proteins of the pathogenesis-related protein superfamily
-
Milne TJ, Abbenante G, Tyndall JD, Halliday J, Lewis RJ, (2003) Isolation and characterization of a cone snail protease with homology to CRISP proteins of the pathogenesis-related protein superfamily. J Biol Chem 278: 31105-31110.
-
(2003)
J Biol Chem
, vol.278
, pp. 31105-31110
-
-
Milne, T.J.1
Abbenante, G.2
Tyndall, J.D.3
Halliday, J.4
Lewis, R.J.5
-
56
-
-
38849143983
-
Neutrophil elastase, proteinase 3 and cathepsin G: physic-ochemical properties, activity and physiopathological functions
-
Korkmaz B, Moreau T, Gauthier F, (2008) Neutrophil elastase, proteinase 3 and cathepsin G: physic-ochemical properties, activity and physiopathological functions. Biochimie 90: 227-242.
-
(2008)
Biochimie
, vol.90
, pp. 227-242
-
-
Korkmaz, B.1
Moreau, T.2
Gauthier, F.3
-
57
-
-
38049065141
-
Rapid clearance of bacteria and their toxins: development of therapeutic proteins
-
Kunkel M, Vuyisich M, Gnanakaran G, Bruening GE, Dandekar AM, et al. (2007) Rapid clearance of bacteria and their toxins: development of therapeutic proteins. Crit Rev Immunol 27: 233-245.
-
(2007)
Crit Rev Immunol
, vol.27
, pp. 233-245
-
-
Kunkel, M.1
Vuyisich, M.2
Gnanakaran, G.3
Bruening, G.E.4
Dandekar, A.M.5
-
58
-
-
0027428548
-
Evolution of an enzyme activity: crystallographic structure at 2-A resolution of cephalosporinase from the ampC gene of Enterobacter cloacae P99 and comparison with a class A penicillinase
-
Lobkovsky E, Moews PC, Liu H, Zhao H, Frere JM, et al. (1993) Evolution of an enzyme activity: crystallographic structure at 2-A resolution of cephalosporinase from the ampC gene of Enterobacter cloacae P99 and comparison with a class A penicillinase. Proc Natl Acad Sci USA 90: 11257-11261.
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 11257-11261
-
-
Lobkovsky, E.1
Moews, P.C.2
Liu, H.3
Zhao, H.4
Frere, J.M.5
-
59
-
-
56749154097
-
Unconventional serine proteases: variations on the catalytic Ser/His/Asp triad configuration
-
Ekici OD, Paetzel M, Dalbey RE, (2008) Unconventional serine proteases: variations on the catalytic Ser/His/Asp triad configuration. Protein Sci 17: 2023-2037.
-
(2008)
Protein Sci
, vol.17
, pp. 2023-2037
-
-
Ekici, O.D.1
Paetzel, M.2
Dalbey, R.E.3
-
60
-
-
0035808477
-
Crystal structure of a deacylation-defective mutant of penicillin-binding protein 5 at 2.3-A resolution
-
Davies C, White SW, Nicholas RA, (2001) Crystal structure of a deacylation-defective mutant of penicillin-binding protein 5 at 2.3-A resolution. J Biol Chem 276: 616-623.
-
(2001)
J Biol Chem
, vol.276
, pp. 616-623
-
-
Davies, C.1
White, S.W.2
Nicholas, R.A.3
-
61
-
-
49149090311
-
Directed evolution generates a novel oncolytic virus for the treatment of colon cancer
-
Kuhn I, Harden P, Bauzon M, Chartier C, Nye J, et al. (2008) Directed evolution generates a novel oncolytic virus for the treatment of colon cancer. PLoS ONE 3: e2409.
-
(2008)
PLoS ONE
, vol.3
-
-
Kuhn, I.1
Harden, P.2
Bauzon, M.3
Chartier, C.4
Nye, J.5
-
62
-
-
79958708794
-
Assessing directed evolution methods for the generation of biosynthetic enzymes with potential in drug biosynthesis
-
Nannemann DP, Birmingham WR, Scism RA, Bachmann BO, (2011) Assessing directed evolution methods for the generation of biosynthetic enzymes with potential in drug biosynthesis. Future Med Chem 3: 809-819.
-
(2011)
Future Med Chem
, vol.3
, pp. 809-819
-
-
Nannemann, D.P.1
Birmingham, W.R.2
Scism, R.A.3
Bachmann, B.O.4
-
63
-
-
80052102623
-
Strategy and success for the directed evolution of enzymes
-
Dalby PA, (2011) Strategy and success for the directed evolution of enzymes. Curr Opin Struct Biol 21: 473-480.
-
(2011)
Curr Opin Struct Biol
, vol.21
, pp. 473-480
-
-
Dalby, P.A.1
-
64
-
-
78349313517
-
Beyond directed evolution-semi-rational protein engineering and design
-
Lutz S, (2010) Beyond directed evolution-semi-rational protein engineering and design. Curr Opin Biotechnol 21: 734-743.
-
(2010)
Curr Opin Biotechnol
, vol.21
, pp. 734-743
-
-
Lutz, S.1
-
65
-
-
15244340939
-
Altering protein specificity: techniques and applications
-
Antikainen NM, Martin SF, (2005) Altering protein specificity: techniques and applications. Bioorg Med Chem 13: 2701-2716.
-
(2005)
Bioorg Med Chem
, vol.13
, pp. 2701-2716
-
-
Antikainen, N.M.1
Martin, S.F.2
-
66
-
-
0038148710
-
Conformational diversity and protein evolution-a 60-year-old hypothesis revisited
-
James LC, Taw k DS, (2003) Conformational diversity and protein evolution-a 60-year-old hypothesis revisited. Trends Biochem Sci 28: 361-368.
-
(2003)
Trends Biochem Sci
, vol.28
, pp. 361-368
-
-
James, L.C.1
Taw k, D.S.2
-
67
-
-
49349085897
-
The subtle benefits of being promiscuous: adaptive evolution potentiated by enzyme promiscuity
-
Depristo MA, (2007) The subtle benefits of being promiscuous: adaptive evolution potentiated by enzyme promiscuity. HFSP J 1: 94-98.
-
(2007)
HFSP J
, vol.1
, pp. 94-98
-
-
Depristo, M.A.1
-
68
-
-
84855440297
-
Functional evolution of dupli-cated odorant-binding protein genes, Obp57d and Obp57e, in Drosophila
-
Harada E, Nakagawa J, Asano T, Taoka M, Sorimachi H, et al. (2012) Functional evolution of dupli-cated odorant-binding protein genes, Obp57d and Obp57e, in Drosophila. PLoS ONE 7: e29710.
-
(2012)
PLoS ONE
, vol.7
-
-
Harada, E.1
Nakagawa, J.2
Asano, T.3
Taoka, M.4
Sorimachi, H.5
-
69
-
-
37049099038
-
Studies on the oxidase activity of copper(ii) carboxypeptidase a
-
Yamamura K, Kaiser ET, (1976) Studies on the oxidase activity of copper(ii) carboxypeptidase a. J Chem Soc, Chem Commun pp. 830-831.
-
(1976)
J Chem Soc, Chem Commun
, pp. 830-831
-
-
Yamamura, K.1
Kaiser, E.T.2
-
70
-
-
84860234014
-
Many pathways in laboratory evolution can lead to improved enzymes: how to escape from local minima
-
Gumulya Y, Sanchis J, Reetz MT, (2012) Many pathways in laboratory evolution can lead to improved enzymes: how to escape from local minima. Chembiochem 13: 1060-1066.
-
(2012)
Chembiochem
, vol.13
, pp. 1060-1066
-
-
Gumulya, Y.1
Sanchis, J.2
Reetz, M.T.3
-
71
-
-
33746891446
-
Penicillin binding proteins: key players in bacterial cell cycle and drug resistance processes
-
Macheboeuf P, Contreras-Martel C, Job V, Dideberg O, Dessen A, (2006) Penicillin binding proteins: key players in bacterial cell cycle and drug resistance processes. FEMS Microbiol Rev 30: 673-691.
-
(2006)
FEMS Microbiol Rev
, vol.30
, pp. 673-691
-
-
Macheboeuf, P.1
Contreras-Martel, C.2
Job, V.3
Dideberg, O.4
Dessen, A.5
-
72
-
-
77149165713
-
Updated functional classification of beta-lactamases
-
Bush K, Jacoby GA, (2010) Updated functional classification of beta-lactamases. Antimicrob Agents Chemother 54: 969-976.
-
(2010)
Antimicrob Agents Chemother
, vol.54
, pp. 969-976
-
-
Bush, K.1
Jacoby, G.A.2
-
73
-
-
57749084589
-
A new family of cyanobacterial penicillin-binding proteins. A missing link in the evolution of class A beta-lactamases
-
Urbach C, Fastrez J, Soumillion P, (2008) A new family of cyanobacterial penicillin-binding proteins. A missing link in the evolution of class A beta-lactamases. J Biol Chem 283: 32516-32526.
-
(2008)
J Biol Chem
, vol.283
, pp. 32516-32526
-
-
Urbach, C.1
Fastrez, J.2
Soumillion, P.3
-
74
-
-
0037378572
-
Sequences near the active site in chimeric penicillin binding proteins 5 and 6 a ect uniform morphology of Escherichia coli
-
Ghosh AS, Young KD, (2003) Sequences near the active site in chimeric penicillin binding proteins 5 and 6 a ect uniform morphology of Escherichia coli. J Bacteriol 185: 2178-2186.
-
(2003)
J Bacteriol
, vol.185
, pp. 2178-2186
-
-
Ghosh, A.S.1
Young, K.D.2
-
75
-
-
80052356047
-
PBP5, PBP6 and DacD play different roles in intrinsic β-lactam resistance of Escherichia coli
-
Sarkar SK, Dutta M, Chowdhury C, Kumar A, Ghosh AS, (2011) PBP5, PBP6 and DacD play different roles in intrinsic β-lactam resistance of Escherichia coli. Microbiology (Reading, Engl) 157: 2702-2707.
-
(2011)
Microbiology (Reading, Engl)
, vol.157
, pp. 2702-2707
-
-
Sarkar, S.K.1
Dutta, M.2
Chowdhury, C.3
Kumar, A.4
Ghosh, A.S.5
-
76
-
-
46249130782
-
Physiological functions of D-alanine carboxypeptidases in Escherichia coli
-
Ghosh AS, Chowdhury C, Nelson DE, (2008) Physiological functions of D-alanine carboxypeptidases in Escherichia coli. Trends Microbiol 16: 309{317.
-
(2008)
Trends Microbiol
, vol.16
, pp. 309-317
-
-
Ghosh, A.S.1
Chowdhury, C.2
Nelson, D.E.3
-
77
-
-
0035964342
-
Electrostatics of nanosystems: appli-cation to microtubules and the ribosome
-
Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA, (2001) Electrostatics of nanosystems: appli-cation to microtubules and the ribosome. Proc Natl Acad Sci USA 98: 10037-10041.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
McCammon, J.A.5
-
78
-
-
3242886771
-
PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations
-
Dolinsky TJ, Nielsen JE, McCammon JA, Baker NA, (2004) PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations. Nucleic Acids Res 32: W665-667.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Dolinsky, T.J.1
Nielsen, J.E.2
McCammon, J.A.3
Baker, N.A.4
-
79
-
-
18644368714
-
The bioperl toolkit: Perl modules for the life sciences
-
Stajich JE, Block D, Boulez K, Brenner SE, Chervitz SA, et al. (2002) The bioperl toolkit: Perl modules for the life sciences. Genome research 12: 1611-1618.
-
(2002)
Genome Research
, vol.12
, pp. 1611-1618
-
-
Stajich, J.E.1
Block, D.2
Boulez, K.3
Brenner, S.E.4
Chervitz, S.A.5
-
80
-
-
0034201441
-
EMBOSS: the European Molecular Biology Open Software Suite
-
Rice P, Longden I, Bleasby A, (2000) EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 16: 276-277.
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
81
-
-
38849092210
-
A note on difficult structure alignment problems
-
Sippl MJ, Wiederstein M, (2008) A note on difficult structure alignment problems. Bioinformatics 24: 426-427.
-
(2008)
Bioinformatics
, vol.24
, pp. 426-427
-
-
Sippl, M.J.1
Wiederstein, M.2
|