메뉴 건너뛰기




Volumn 365, Issue 1-2, 2012, Pages 279-299

DNA-protein interactions: Methods for detection and analysis

Author keywords

Biophysical techniques; Chromatin immunoprecipitation assay; DNA protein interactions; Electrophoretic mobility shift assay; Footprinting; Phage display; Southwestern blotting; Yeast one hybrid assay

Indexed keywords

DNA ADENINE METHYLTRANSFERASE;

EID: 84862807218     PISSN: 03008177     EISSN: 15734919     Source Type: Journal    
DOI: 10.1007/s11010-012-1269-z     Document Type: Article
Times cited : (118)

References (170)
  • 1
    • 0033028741 scopus 로고    scopus 로고
    • Quantifying DNA-protein interactions by double-stranded DNA arrays
    • 10385322 1:CAS:528:DyaK1MXjs1Kns7s%3D 10.1038/9878
    • ML Bulyk E Gentalen DJ Lockhart GM Church 1999 Quantifying DNA-protein interactions by double-stranded DNA arrays Nat Biotechnol 17 573 577 10385322 1:CAS:528:DyaK1MXjs1Kns7s%3D 10.1038/9878
    • (1999) Nat Biotechnol , vol.17 , pp. 573-577
    • Bulyk, M.L.1    Gentalen, E.2    Lockhart, D.J.3    Church, G.M.4
  • 2
    • 33746829957 scopus 로고    scopus 로고
    • DNA microarray technologies for measuring protein-DNA interactions
    • 16839757 1:CAS:528:DC%2BD28XotFWlu78%3D 10.1016/j.copbio.2006.06.015
    • ML Bulyk 2006 DNA microarray technologies for measuring protein-DNA interactions Curr Opin Biotechnol 17 422 430 16839757 1:CAS:528: DC%2BD28XotFWlu78%3D 10.1016/j.copbio.2006.06.015
    • (2006) Curr Opin Biotechnol , vol.17 , pp. 422-430
    • Bulyk, M.L.1
  • 3
    • 0023189809 scopus 로고
    • The use of micrococcal nuclease as a probe for drug-binding sites on DNA
    • 3593730 1:CAS:528:DyaL2sXmtFWgtr8%3D
    • KR Fox MJ Waring 1987 The use of micrococcal nuclease as a probe for drug-binding sites on DNA Biochim Biophys Acta 909 145 155 3593730 1:CAS:528:DyaL2sXmtFWgtr8%3D
    • (1987) Biochim Biophys Acta , vol.909 , pp. 145-155
    • Fox, K.R.1    Waring, M.J.2
  • 4
    • 0020284236 scopus 로고
    • Footprinting with MPE.Fe(II)-complementary-strand analyses of distamycin-binding and actinomycin-binding sites on heterogeneous DNA
    • 10.1101/SQB.1983.047.01.040
    • MWV Dyke PB Dervan 1982 Footprinting with MPE.Fe(II)-complementary-strand analyses of distamycin-binding and actinomycin-binding sites on heterogeneous DNA Cold Spring Harb Symp Quant Biol 47 347 353 10.1101/SQB.1983.047.01.040
    • (1982) Cold Spring Harb Symp Quant Biol , vol.47 , pp. 347-353
    • Dyke, M.W.V.1    Dervan, P.B.2
  • 5
    • 0021112472 scopus 로고
    • Methidiumpropyl-EDTA-Fe(II) and DNase i footprinting report different small molecule binding site sizes on DNA
    • 6225070 10.1093/nar/11.16.5555
    • MWV Dyke PB Dervan 1983 Methidiumpropyl-EDTA-Fe(II) and DNase I footprinting report different small molecule binding site sizes on DNA Nucleic Acids Res 11 5555 5567 6225070 10.1093/nar/11.16.5555
    • (1983) Nucleic Acids Res , vol.11 , pp. 5555-5567
    • Dyke, M.W.V.1    Dervan, P.B.2
  • 6
    • 0022302440 scopus 로고
    • Nuclease activity of 1,10-phenanthroline-copper ion. Conformational analysis and footprinting of the lac operon
    • 4092055 1:CAS:528:DyaL28XivFem 10.1021/bi00348a032
    • A Spassky DS Sigman 1985 Nuclease activity of 1,10-phenanthroline-copper ion. Conformational analysis and footprinting of the lac operon Biochemistry 24 8050 8056 4092055 1:CAS:528:DyaL28XivFem 10.1021/bi00348a032
    • (1985) Biochemistry , vol.24 , pp. 8050-8056
    • Spassky, A.1    Sigman, D.S.2
  • 7
    • 0026721169 scopus 로고
    • DNA binding and photocleavage by uranyl(VI)(UO22+) salts
    • 1:CAS:528:DyaK38XktVegs7Y%3D 10.1021/ja00039a003
    • PE Nielsen C Hiort SH Sonnichsen O Buchardt O Dahl B Norden 1992 DNA binding and photocleavage by uranyl(VI)(UO22+) salts J Am Chem Soc 114 4967 4975 1:CAS:528:DyaK38XktVegs7Y%3D 10.1021/ja00039a003
    • (1992) J Am Chem Soc , vol.114 , pp. 4967-4975
    • Nielsen, P.E.1    Hiort, C.2    Sonnichsen, S.H.3    Buchardt, O.4    Dahl, O.5    Norden, B.6
  • 8
    • 0026629421 scopus 로고
    • Uranyl photofootprinting of triple helical DNA
    • 1614860 1:CAS:528:DyaK3sXitVOks7o%3D 10.1093/nar/20.11.2735
    • PE Nielsen 1992 Uranyl photofootprinting of triple helical DNA Nucleic Acids Res 20 2735 2739 1614860 1:CAS:528:DyaK3sXitVOks7o%3D 10.1093/nar/20.11. 2735
    • (1992) Nucleic Acids Res , vol.20 , pp. 2735-2739
    • Nielsen, P.E.1
  • 9
    • 0025340437 scopus 로고
    • Detection of drug binding to DNA by hydroxyl radical footprinting. Relationship of distamycin binding sites to DNA structure and positioned nucleosomes on 5S RNA genes of Xenopus
    • 1696501 1:CAS:528:DyaK3cXktFOmtbg%3D 10.1021/bi00477a023
    • MEA Churchill JJ Hayes TD Tullius 1990 Detection of drug binding to DNA by hydroxyl radical footprinting. Relationship of distamycin binding sites to DNA structure and positioned nucleosomes on 5S RNA genes of Xenopus Biochemistry 29 6043 6050 1696501 1:CAS:528:DyaK3cXktFOmtbg%3D 10.1021/bi00477a023
    • (1990) Biochemistry , vol.29 , pp. 6043-6050
    • Churchill, M.E.A.1    Hayes, J.J.2    Tullius, T.D.3
  • 10
    • 0024333887 scopus 로고
    • High resolution hydroxy radical footprinting of the binding of mithramydn and related antibiotics to DNA
    • 2548163 1:CAS:528:DyaL1MXlt1Kmt7c%3D 10.1093/nar/17.14.5447
    • BMG Cons KR Fox 1989 High resolution hydroxy radical footprinting of the binding of mithramydn and related antibiotics to DNA Nucleic Acids Res 17 5447 5460 2548163 1:CAS:528:DyaL1MXlt1Kmt7c%3D 10.1093/nar/17.14.5447
    • (1989) Nucleic Acids Res , vol.17 , pp. 5447-5460
    • Cons, B.M.G.1    Fox, K.R.2
  • 11
    • 44949172720 scopus 로고    scopus 로고
    • Footprinting protein-DNA complexes using the hydroxyl radical
    • 1:CAS:528:DC%2BD1cXmvVemt7Y%3D 10.1038/nprot.2008.72
    • SS Jain TD Tullius 2008 Footprinting protein-DNA complexes using the hydroxyl radical Nat Protocols 3 1092 1100 1:CAS:528:DC%2BD1cXmvVemt7Y%3D 10.1038/nprot.2008.72
    • (2008) Nat Protocols , vol.3 , pp. 1092-1100
    • Jain, S.S.1    Tullius, T.D.2
  • 12
    • 0024411573 scopus 로고
    • Use of the hydroxyl radical and gel electrophoresis to study DNA structure
    • 2504579 1:CAS:528:DyaK3cXhvVGjtQ%3D%3D 10.1002/elps.1150100518
    • GE Shafer MA Price TD Tullius 1989 Use of the hydroxyl radical and gel electrophoresis to study DNA structure Electrophoresis 10 397 404 2504579 1:CAS:528:DyaK3cXhvVGjtQ%3D%3D 10.1002/elps.1150100518
    • (1989) Electrophoresis , vol.10 , pp. 397-404
    • Shafer, G.E.1    Price, M.A.2    Tullius, T.D.3
  • 14
    • 0033230180 scopus 로고    scopus 로고
    • DNA cleavage by hydroxy-salicylidene-ethylendiamine-iron complexes
    • 10518606 1:CAS:528:DyaK1MXnt1Gktbo%3D 10.1093/nar/27.21.4160
    • S Routier H Vezin E Lamour JL Bernier JP Catteau C Bailly 1999 DNA cleavage by hydroxy-salicylidene-ethylendiamine-iron complexes Nucleic Acids Res 27 4160 4166 10518606 1:CAS:528:DyaK1MXnt1Gktbo%3D 10.1093/nar/27.21.4160
    • (1999) Nucleic Acids Res , vol.27 , pp. 4160-4166
    • Routier, S.1    Vezin, H.2    Lamour, E.3    Bernier, J.L.4    Catteau, J.P.5    Bailly, C.6
  • 15
    • 0025382508 scopus 로고
    • Chemical and photochemical probing of DNA complexes
    • 2191698 1:CAS:528:DyaK3cXitlWgtLw%3D 10.1002/jmr.300030102
    • PE Nielsen 1990 Chemical and photochemical probing of DNA complexes J Mol Recognit 3 1 25 2191698 1:CAS:528:DyaK3cXitlWgtLw%3D 10.1002/jmr.300030102
    • (1990) J Mol Recognit , vol.3 , pp. 1-25
    • Nielsen, P.E.1
  • 16
    • 0028899328 scopus 로고
    • Comparison of different footprinting methodologies for detecting binding sites for a small ligand on DNA
    • 7779305 1:CAS:528:DyaK2MXktF2rsr4%3D
    • C Bailly MJ Waring 1995 Comparison of different footprinting methodologies for detecting binding sites for a small ligand on DNA J Biomol Struct Dyn 12 869 898 7779305 1:CAS:528:DyaK2MXktF2rsr4%3D
    • (1995) J Biomol Struct Dyn , vol.12 , pp. 869-898
    • Bailly, C.1    Waring, M.J.2
  • 17
    • 0021724702 scopus 로고
    • Structural specificities of five commonly used DNA nucleases
    • 6086935 1:CAS:528:DyaL2cXlt1Gktr0%3D 10.1016/0022-2836(84)90176-1
    • HR Drew 1984 Structural specificities of five commonly used DNA nucleases J Mol Biol 176 535 557 6086935 1:CAS:528:DyaL2cXlt1Gktr0%3D 10.1016/0022-2836(84)90176-1
    • (1984) J Mol Biol , vol.176 , pp. 535-557
    • Drew, H.R.1
  • 18
    • 0034886199 scopus 로고    scopus 로고
    • High-resolution footprinting studies of drug-DNA complexes using chemical and enzymatic probes
    • J.B. Chaires (eds). Academic Press San Diego. 10.1016/S0076-6879(01) 40434-4
    • Fox KR, Waring MJ (2001) High-resolution footprinting studies of drug-DNA complexes using chemical and enzymatic probes. In: Chaires JB (ed) Drug-nucleic acid interactions. Academic Press, San Diego, pp 412-430
    • (2001) Drug-nucleic Acid Interactions , pp. 412-430
    • Fox, K.R.1    Waring, M.J.2
  • 19
    • 0018199224 scopus 로고
    • DNAse footprinting: A simple method for the detection of protein-DNA binding specificity
    • 212715 1:CAS:528:DyaE1MXislyj 10.1093/nar/5.9.3157
    • DJ Galas A Schmitz 1978 DNAse footprinting: a simple method for the detection of protein-DNA binding specificity Nucleic Acids Res 5 3157 3170 212715 1:CAS:528:DyaE1MXislyj 10.1093/nar/5.9.3157
    • (1978) Nucleic Acids Res , vol.5 , pp. 3157-3170
    • Galas, D.J.1    Schmitz, A.2
  • 20
    • 84862797545 scopus 로고    scopus 로고
    • DNAse i footprinting
    • R. Rapley (eds). 8 Humana Press Totowa, NJ
    • Leblanc B, Moss T (2000) DNAse I footprinting. In: Rapley R (ed) The nucleic acid protocols handbook, 8th edn. Humana Press, Totowa, NJ, pp 729-735
    • (2000) The Nucleic Acid Protocols Handbook , pp. 729-735
    • Leblanc, B.1    Moss, T.2
  • 22
    • 7944234228 scopus 로고    scopus 로고
    • DNase i footprinting of small molecule binding sites on DNA
    • J.M. Walker P. Herdewijn (eds). Humana Press Totowa
    • Bailly C, Kluza J, Martin C, Ellis T, Waring MJ (2005) DNase I footprinting of small molecule binding sites on DNA. In: Walker JM, Herdewijn P (eds) Oligonucleotide synthesis. Humana Press, Totowa, pp 319-342
    • (2005) Oligonucleotide Synthesis , pp. 319-342
    • Bailly, C.1    Kluza, J.2    Martin, C.3    Ellis, T.4    Waring, M.J.5
  • 23
    • 0034935287 scopus 로고    scopus 로고
    • Nonradiochemical DNase i footprinting by capillary electrophoresis
    • 11465496 1:CAS:528:DC%2BD3MXltFamsbg%3D 10.1002/1522-2683(200106)22: 10<1979::AID-ELPS1979>3.0.CO;2-A
    • DO Wilson P Johnson BR McCord 2001 Nonradiochemical DNase I footprinting by capillary electrophoresis Electrophoresis 22 1979 1986 11465496 1:CAS:528:DC%2BD3MXltFamsbg%3D 10.1002/1522-2683(200106)22:10<1979::AID- ELPS1979>3.0.CO;2-A
    • (2001) Electrophoresis , vol.22 , pp. 1979-1986
    • Wilson, D.O.1    Johnson, P.2    McCord, B.R.3
  • 24
    • 0033748094 scopus 로고    scopus 로고
    • Footprinting with an automated capillary DNA sequencer
    • 11084866 1:CAS:528:DC%2BD3cXotVyhtbk%3D
    • W Yindeeyoungyeon MA Schell 2000 Footprinting with an automated capillary DNA sequencer Biotechniques 29 1034 1036 11084866 1:CAS:528: DC%2BD3cXotVyhtbk%3D
    • (2000) Biotechniques , vol.29 , pp. 1034-1036
    • Yindeeyoungyeon, W.1    Schell, M.A.2
  • 25
    • 77956276383 scopus 로고    scopus 로고
    • DNase-seq: A high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells
    • 10.1101/pdb.prot5384
    • L Song GE Crawford 2010 DNase-seq: a high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells Cold Spring Harb Protoc 2010 1 11 10.1101/pdb.prot5384
    • (2010) Cold Spring Harb Protoc , vol.2010 , pp. 1-11
    • Song, L.1    Crawford, G.E.2
  • 26
    • 0030741021 scopus 로고    scopus 로고
    • Long-range and highly sensitive DNase i foot-printing by an automated infrared DNA sequencer
    • 9266087 1:CAS:528:DyaK2sXltlGgsrc%3D
    • M Machida H Kamio D Sorensen 1997 Long-range and highly sensitive DNase I foot-printing by an automated infrared DNA sequencer Biotechniques 23 300 303 9266087 1:CAS:528:DyaK2sXltlGgsrc%3D
    • (1997) Biotechniques , vol.23 , pp. 300-303
    • MacHida, M.1    Kamio, H.2    Sorensen, D.3
  • 27
    • 0028339905 scopus 로고
    • Solid phase DNase i footprinting: Quick and versatile
    • 8190649 1:CAS:528:DyaK2cXksFSqs7Y%3D 10.1093/nar/22.8.1511
    • R Sandaltzopoulos PB Becker 1994 Solid phase DNase I footprinting: quick and versatile Nucleic Acids Res 22 1511 1512 8190649 1:CAS:528: DyaK2cXksFSqs7Y%3D 10.1093/nar/22.8.1511
    • (1994) Nucleic Acids Res , vol.22 , pp. 1511-1512
    • Sandaltzopoulos, R.1    Becker, P.B.2
  • 28
    • 0022437260 scopus 로고
    • Quantitative DNase footprint titration: A method for studying protein-DNA interactions
    • C.H.W. Hirs S.N. Timasheff (eds). 9 Academic Press New York
    • Brenowitz M, Senear DF, Shea MA, Ackers GK (1986) Quantitative DNase footprint titration: a method for studying protein-DNA interactions. In: Hirs CHW, Timasheff SN (eds) Enzyme structure Part K, 9th edn. Academic Press, New York, pp 132-181
    • (1986) Enzyme Structure Part K , pp. 132-181
    • Brenowitz, M.1    Senear, D.F.2    Shea, M.A.3    Ackers, G.K.4
  • 29
    • 0029875301 scopus 로고    scopus 로고
    • Dissociation kinetics of actinomycin D from individual GpC sites in DNA
    • 8620870 1:CAS:528:DyaK28Xitlyju74%3D 10.1111/j.1432-1033.1996.0164n.x
    • MC Fletcher KR Fox 1996 Dissociation kinetics of actinomycin D from individual GpC sites in DNA Eur J Biochem 237 164 170 8620870 1:CAS:528:DyaK28Xitlyju74%3D 10.1111/j.1432-1033.1996.0164n.x
    • (1996) Eur J Biochem , vol.237 , pp. 164-170
    • Fletcher, M.C.1    Fox, K.R.2
  • 30
    • 77957080402 scopus 로고    scopus 로고
    • Equilibrium and kinetic quantitative DNase i footprinting
    • G.B. Jones (eds). 4 Elsevier New York
    • Dhavan GM, Mollah AKMM, Brenowitz M (2002) Equilibrium and kinetic quantitative DNase I footprinting. In: Jones GB (ed) Advances in DNA sequence-specific agents, 4th edn. Elsevier, New York, pp 139-155
    • (2002) Advances in DNA Sequence-specific Agents , pp. 139-155
    • Dhavan, G.M.1    Mollah, A.K.M.M.2    Brenowitz, M.3
  • 31
    • 0025735111 scopus 로고
    • Chromatin differences between active and inactive X chromosomes revealed by genomic footprinting of permealized cells using DNase i and ligation-mediated PCR
    • 2044957 1:CAS:528:DyaK3MXks1Kit7w%3D 10.1101/gad.5.6.1102
    • GP Pfeifer AD Riggs 1991 Chromatin differences between active and inactive X chromosomes revealed by genomic footprinting of permealized cells using DNase I and ligation-mediated PCR Genes Dev 5 1102 1113 2044957 1:CAS:528:DyaK3MXks1Kit7w%3D 10.1101/gad.5.6.1102
    • (1991) Genes Dev , vol.5 , pp. 1102-1113
    • Pfeifer, G.P.1    Riggs, A.D.2
  • 33
    • 0034890806 scopus 로고    scopus 로고
    • Drug-RNA footprinting
    • 11494862 1:CAS:528:DC%2BD3MXmslWksLs%3D 10.1016/S0076-6879(01)40435-6
    • MP McPike J Goodisman JC Dabrowiak 2001 Drug-RNA footprinting Methods Enzymol 340 431 449 11494862 1:CAS:528:DC%2BD3MXmslWksLs%3D 10.1016/S0076- 6879(01)40435-6
    • (2001) Methods Enzymol , vol.340 , pp. 431-449
    • McPike, M.P.1    Goodisman, J.2    Dabrowiak, J.C.3
  • 34
    • 33847628151 scopus 로고    scopus 로고
    • A nanoplasmonic molecular ruler for measuring nuclease activity and DNA footprinting
    • 18654141 1:CAS:528:DC%2BD28XhtFCisrrK 10.1038/nnano.2006.51
    • GL Liu Y Yin S Kunchakarra B Mukherjee, et al. 2006 A nanoplasmonic molecular ruler for measuring nuclease activity and DNA footprinting Nat Nanotechnol 1 47 52 18654141 1:CAS:528:DC%2BD28XhtFCisrrK 10.1038/nnano.2006.51
    • (2006) Nat Nanotechnol , vol.1 , pp. 47-52
    • Liu, G.L.1    Yin, Y.2    Kunchakarra, S.3    Mukherjee, B.4
  • 35
    • 34548169696 scopus 로고    scopus 로고
    • Electrophoretic mobility shift assay (EMSA) for detecting protein-nucleic acid interactions
    • 1:CAS:528:DC%2BD2sXhtFagtr3I 10.1038/nprot.2007.249
    • LM Hellman MG Fried 2007 Electrophoretic mobility shift assay (EMSA) for detecting protein-nucleic acid interactions Nat Protocols 2 1849 1861 1:CAS:528:DC%2BD2sXhtFagtr3I 10.1038/nprot.2007.249
    • (2007) Nat Protocols , vol.2 , pp. 1849-1861
    • Hellman, L.M.1    Fried, M.G.2
  • 36
    • 0019878376 scopus 로고
    • Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis
    • 6275366 1:CAS:528:DyaL38XmtlGgtA%3D%3D 10.1093/nar/9.23.6505
    • M Fried DM Crothers 1981 Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis Nucleic Acids Res 9 6505 6525 6275366 1:CAS:528:DyaL38XmtlGgtA%3D%3D 10.1093/nar/9.23.6505
    • (1981) Nucleic Acids Res , vol.9 , pp. 6505-6525
    • Fried, M.1    Crothers, D.M.2
  • 37
    • 0019877067 scopus 로고
    • A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: Application to components of the Escherichia coli lactose operon regulatory system
    • 6269071 1:CAS:528:DyaL3MXkvFelurY%3D 10.1093/nar/9.13.3047
    • MM Garner A Revzin 1981 A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: application to components of the Escherichia coli lactose operon regulatory system Nucleic Acids Res 9 3047 3060 6269071 1:CAS:528:DyaL3MXkvFelurY%3D 10.1093/nar/9.13.3047
    • (1981) Nucleic Acids Res , vol.9 , pp. 3047-3060
    • Garner, M.M.1    Revzin, A.2
  • 38
    • 67649112277 scopus 로고    scopus 로고
    • Filter-binding assays
    • B. Leblanc T. Moss J.M. Walker (eds). Humana Press Towota
    • Stockley PG (2009) Filter-binding assays. In: Leblanc B, Moss T, Walker JM (eds) DNA-protein interactions. Humana Press, Towota, pp 1-14
    • (2009) DNA-protein Interactions , pp. 1-14
    • Stockley, P.G.1
  • 39
    • 0021342434 scopus 로고
    • Kinetics and mechanism in the reaction of gene regulatory proteins with DNA
    • 6319716 1:CAS:528:DyaL2cXhtFGltLc%3D 10.1016/S0022-2836(84)80026-1
    • MG Fried DM Crothers 1984 Kinetics and mechanism in the reaction of gene regulatory proteins with DNA J Mol Biol 172 263 282 6319716 1:CAS:528: DyaL2cXhtFGltLc%3D 10.1016/S0022-2836(84)80026-1
    • (1984) J Mol Biol , vol.172 , pp. 263-282
    • Fried, M.G.1    Crothers, D.M.2
  • 40
    • 0032530598 scopus 로고    scopus 로고
    • A capillary electrophoresis mobility shift assay for protein-DNA binding affinities free in solution
    • 9722653 1:CAS:528:DyaK1cXmsVygu7k%3D 10.1093/nar/26.18.4304
    • GJ Foulds FA Etzkorn 1998 A capillary electrophoresis mobility shift assay for protein-DNA binding affinities free in solution Nucleic Acids Res 26 4304 4305 9722653 1:CAS:528:DyaK1cXmsVygu7k%3D 10.1093/nar/26.18.4304
    • (1998) Nucleic Acids Res , vol.26 , pp. 4304-4305
    • Foulds, G.J.1    Etzkorn, F.A.2
  • 41
    • 0030048676 scopus 로고    scopus 로고
    • DNA-protein binding assays from a single sea urchin egg: A high-sensitivity capillary electrophoresis method
    • 8552681 1:CAS:528:DyaK28XjslOqtA%3D%3D 10.1073/pnas.93.1.86
    • J Xian MG Harrington EH Davidson 1996 DNA-protein binding assays from a single sea urchin egg: a high-sensitivity capillary electrophoresis method Proc Natl Acad Sci 93 86 90 8552681 1:CAS:528:DyaK28XjslOqtA%3D%3D 10.1073/pnas.93.1.86
    • (1996) Proc Natl Acad Sci , vol.93 , pp. 86-90
    • Xian, J.1    Harrington, M.G.2    Davidson, E.H.3
  • 42
    • 0029118240 scopus 로고
    • Immunodepletion EMSA: A novel method to identify proteins in a protein-DNA complex
    • 7667113 1:CAS:528:DyaK2MXotVOitb0%3D
    • RB Dyer NK Herzog 1995 Immunodepletion EMSA: a novel method to identify proteins in a protein-DNA complex Nucleic Acids Res 23 3345 3346 7667113 1:CAS:528:DyaK2MXotVOitb0%3D
    • (1995) Nucleic Acids Res , vol.23 , pp. 3345-3346
    • Dyer, R.B.1    Herzog, N.K.2
  • 43
    • 0035223113 scopus 로고    scopus 로고
    • Identification of sequence-specific DNA-binding proteins by southwestern blotting
    • T. Moss J.M. Walker (eds). Humana Press Totowa
    • Labbé S, Stewart G, LaRochelle O, Séguin C, Poirier GG (2001) Identification of sequence-specific DNA-binding proteins by southwestern blotting. In: Moss T, Walker JM (eds) DNA-protein interactions. Humana Press, Totowa, pp 255-264
    • (2001) DNA-protein Interactions , pp. 255-264
    • Labbé, S.1    Stewart, G.2    Larochelle, O.3    Séguin, C.4    Poirier, G.G.5
  • 44
    • 0031205373 scopus 로고    scopus 로고
    • Methods for the analysis of DNA-protein interactions
    • 9327396 1:CAS:528:DyaK2sXmslCisLs%3D 10.1007/BF02762338
    • M Guille G Kneale 1997 Methods for the analysis of DNA-protein interactions Mol Biotechnol 8 35 52 9327396 1:CAS:528:DyaK2sXmslCisLs%3D 10.1007/BF02762338
    • (1997) Mol Biotechnol , vol.8 , pp. 35-52
    • Guille, M.1    Kneale, G.2
  • 45
    • 4444383012 scopus 로고    scopus 로고
    • An improved method for southwestern blotting
    • JS Handen HF Rosenberg 1997 An improved method for southwestern blotting Front Biosci 2 9 11
    • (1997) Front Biosci , vol.2 , pp. 9-11
    • Handen, J.S.1    Rosenberg, H.F.2
  • 46
    • 38149003098 scopus 로고    scopus 로고
    • Southwestern blotting in investigating transcriptional regulation
    • 1:CAS:528:DC%2BD1cXlsVOisA%3D%3D 10.1038/nprot.2007.492
    • FKY Siu LTO Lee BKC Chow 2008 Southwestern blotting in investigating transcriptional regulation Nat Protocols 3 51 58 1:CAS:528: DC%2BD1cXlsVOisA%3D%3D 10.1038/nprot.2007.492
    • (2008) Nat Protocols , vol.3 , pp. 51-58
    • Siu, F.K.Y.1    Lee, L.T.O.2    Chow, B.K.C.3
  • 47
    • 0018907009 scopus 로고
    • The detection of DNA-binding proteins by protein blotting
    • 6243775 1:CAS:528:DyaL3cXhtVKru70%3D 10.1093/nar/8.1.1
    • B Bowen J Steinberg UK Laemmli H Weintraub 1980 The detection of DNA-binding proteins by protein blotting Nucleic Acids Res 8 1 20 6243775 1:CAS:528:DyaL3cXhtVKru70%3D 10.1093/nar/8.1.1
    • (1980) Nucleic Acids Res , vol.8 , pp. 1-20
    • Bowen, B.1    Steinberg, J.2    Laemmli, U.K.3    Weintraub, H.4
  • 48
    • 20544459413 scopus 로고    scopus 로고
    • Heterogenous nuclear ribonucleoprotein F modulates angiotensinogen gene expression in rat kidney proximal tubular cells
    • 15659559 1:CAS:528:DC%2BD2MXis12gurY%3D 10.1681/ASN.2004080715
    • C-C Wei D-F Guo S-L Zhang JR Ingelfinger JSD Chan 2005 Heterogenous nuclear ribonucleoprotein F modulates angiotensinogen gene expression in rat kidney proximal tubular cells J Am Soc Nephrol 16 616 628 15659559 1:CAS:528:DC%2BD2MXis12gurY%3D 10.1681/ASN.2004080715
    • (2005) J Am Soc Nephrol , vol.16 , pp. 616-628
    • Wei, C.-C.1    Guo, D.-F.2    Zhang, S.-L.3    Ingelfinger, J.R.4    Chan, J.S.D.5
  • 49
    • 67650355018 scopus 로고    scopus 로고
    • Two-dimensional southwestern blotting and characterization of transcription factors on-blot
    • 19388704 1:CAS:528:DC%2BD1MXmtF2qtb4%3D 10.1021/pr900214p
    • D Jiang Y Jia Y Zhou HW Jarrett 2009 Two-dimensional southwestern blotting and characterization of transcription factors on-blot J Proteome Res 8 3693 3701 19388704 1:CAS:528:DC%2BD1MXmtF2qtb4%3D 10.1021/pr900214p
    • (2009) J Proteome Res , vol.8 , pp. 3693-3701
    • Jiang, D.1    Jia, Y.2    Zhou, Y.3    Jarrett, H.W.4
  • 50
    • 67649227836 scopus 로고    scopus 로고
    • Use of non-radioactive detection method for north- and south-western blot
    • B.T. Kurien R.H. Scofield (eds). Humana Press New York. 10.1007/978-1-59745-542-8-44
    • Franke C, Grafe D, Bartsch H, Bachmann M (2009) Use of non-radioactive detection method for north- and south-western blot. In: Kurien BT, Scofield RH (eds) Protein blotting and detection. Humana Press, New York, pp 441-449
    • (2009) Protein Blotting and Detection , pp. 441-449
    • Franke, C.1    Grafe, D.2    Bartsch, H.3    Bachmann, M.4
  • 51
    • 0026737233 scopus 로고
    • Non Radioactive southwestern analysis using chemiluminescence detection
    • 1476722 1:CAS:528:DyaK3sXhs1Gk
    • S Dooley C Walter N Blin 1992 Non Radioactive southwestern analysis using chemiluminescence detection Biotechniques 13 540 543 1476722 1:CAS:528:DyaK3sXhs1Gk
    • (1992) Biotechniques , vol.13 , pp. 540-543
    • Dooley, S.1    Walter, C.2    Blin, N.3
  • 52
    • 77957885232 scopus 로고    scopus 로고
    • Repeated probing of southwestern blots using alkaline phosphatase stripping
    • 20926088 1:CAS:528:DC%2BC3cXhtlSmurjN 10.1016/j.chroma.2010.09.033
    • Y Jia D Jiang HW Jarrett 2010 Repeated probing of southwestern blots using alkaline phosphatase stripping J Chromatogr A 1217 7177 7181 20926088 1:CAS:528:DC%2BC3cXhtlSmurjN 10.1016/j.chroma.2010.09.033
    • (2010) J Chromatogr A , vol.1217 , pp. 7177-7181
    • Jia, Y.1    Jiang, D.2    Jarrett, H.W.3
  • 53
    • 0035235823 scopus 로고    scopus 로고
    • Determination of a Transcription Factor Binding Site by Nuclease Protection Footprinting onto southwestern Blots
    • J.M. Walker T. Moss (eds). Humana Press Towota
    • Papavassiliou AG (2001) Determination of a Transcription Factor Binding Site by Nuclease Protection Footprinting onto southwestern Blots. In: Walker JM, Moss T (eds) DNA-protein interactions. Humana Press, Towota, pp 135-149
    • (2001) DNA-protein Interactions , pp. 135-149
    • Papavassiliou, A.G.1
  • 54
    • 0027163827 scopus 로고
    • Distinguishing specific from nonspecific complexes on southwestern blots by a rapid DMS protection assay
    • 8506156 1:CAS:528:DyaK3sXks1Krtbk%3D 10.1093/nar/21.10.2531
    • M Polycarpou-Schwarz AG Papavassiliou 1993 Distinguishing specific from nonspecific complexes on southwestern blots by a rapid DMS protection assay Nucleic Acids Res 21 2531 2532 8506156 1:CAS:528:DyaK3sXks1Krtbk%3D 10.1093/nar/21.10.2531
    • (1993) Nucleic Acids Res , vol.21 , pp. 2531-2532
    • Polycarpou-Schwarz, M.1    Papavassiliou, A.G.2
  • 55
    • 0025826186 scopus 로고
    • Selection of sequences recognized by a DNA binding protein using a preparative southwestern blot
    • 1891359 1:CAS:528:DyaK38XjsFKjsA%3D%3D 10.1093/nar/19.17.4675
    • AD Keller T Maniatis 1991 Selection of sequences recognized by a DNA binding protein using a preparative southwestern blot Nucleic Acids Res 19 4675 4680 1891359 1:CAS:528:DyaK38XjsFKjsA%3D%3D 10.1093/nar/19.17.4675
    • (1991) Nucleic Acids Res , vol.19 , pp. 4675-4680
    • Keller, A.D.1    Maniatis, T.2
  • 56
    • 0031049025 scopus 로고    scopus 로고
    • Caution is advised when cDNA expression libraries are screened by southwestern methodologies
    • 9043694 1:CAS:528:DyaK2sXhtFeku7Y%3D
    • KJ Stuempfle J Floros 1997 Caution is advised when cDNA expression libraries are screened by southwestern methodologies Biotechniques 22 260 264 9043694 1:CAS:528:DyaK2sXhtFeku7Y%3D
    • (1997) Biotechniques , vol.22 , pp. 260-264
    • Stuempfle, K.J.1    Floros, J.2
  • 57
    • 0031802464 scopus 로고    scopus 로고
    • Localization of xenobiotic-responsive element binding protein in rat hepatocyte nuclei after methylcholanthrene administration as revealed by in situ southwestern hybridization
    • 9632741 1:CAS:528:DyaK1cXkt1GrtL8%3D 10.1177/002215549804600705
    • Y Asaka J Watanabe S Kanamura 1998 Localization of xenobiotic-responsive element binding protein in rat hepatocyte nuclei after methylcholanthrene administration as revealed by in situ southwestern hybridization J Histochem Cytochem 46 825 832 9632741 1:CAS:528:DyaK1cXkt1GrtL8%3D 10.1177/ 002215549804600705
    • (1998) J Histochem Cytochem , vol.46 , pp. 825-832
    • Asaka, Y.1    Watanabe, J.2    Kanamura, S.3
  • 58
    • 0028101837 scopus 로고
    • Localization of cyclic adenosine 3,5′-monophosphate-responsive element (CRE)-binding proteins by southwestern histochemistry
    • 7930523 1:CAS:528:DyaK2cXmslGksb4%3D 10.1177/42.10.7930523
    • T Koji K Komuta M Nozawa S Yamada PK Nakane 1994 Localization of cyclic adenosine 3,5′-monophosphate-responsive element (CRE)-binding proteins by southwestern histochemistry J Histochem Cytochem 42 1399 1405 7930523 1:CAS:528:DyaK2cXmslGksb4%3D 10.1177/42.10.7930523
    • (1994) J Histochem Cytochem , vol.42 , pp. 1399-1405
    • Koji, T.1    Komuta, K.2    Nozawa, M.3    Yamada, S.4    Nakane, P.K.5
  • 59
    • 0036992744 scopus 로고    scopus 로고
    • Southwestern histochemistry as a molecular histochemical tool for analysis of expression of transcription factors: Application to paraffin-embedded tissue sections
    • 12658356 1:CAS:528:DC%2BD38XpsFOmt78%3D 10.1007/s007950200025
    • M Shin Y Hishikawa Izumi S-ichi T Koji M Shin Y Hishikawa S Izumi T Koji 2002 Southwestern histochemistry as a molecular histochemical tool for analysis of expression of transcription factors: application to paraffin-embedded tissue sections Med Electron Microsc 35 217 224 12658356 1:CAS:528:DC%2BD38XpsFOmt78%3D 10.1007/s007950200025
    • (2002) Med Electron Microsc , vol.35 , pp. 217-224
    • Shin, M.1    Hishikawa, Y.2    Izumi, S.3    Koji, T.4    Shin, M.5    Hishikawa, Y.6    Izumi, S.7    Koji, T.8
  • 60
    • 70249130836 scopus 로고    scopus 로고
    • Methods for proteomic analysis of transcription factors
    • 19726046 1:CAS:528:DC%2BD1MXhtFGqsb7N 10.1016/j.chroma.2009.08.044
    • D Jiang HW Jarrett WE Haskins 2009 Methods for proteomic analysis of transcription factors J Chromatogr A 1216 6881 6889 19726046 1:CAS:528:DC%2BD1MXhtFGqsb7N 10.1016/j.chroma.2009.08.044
    • (2009) J Chromatogr A , vol.1216 , pp. 6881-6889
    • Jiang, D.1    Jarrett, H.W.2    Haskins, W.E.3
  • 61
    • 0027213634 scopus 로고
    • Molecular cloning of the olfactory neuronal transcription factor Olf-1 by genetic selection in yeast
    • 8321284 1:CAS:528:DyaK3sXlsFaqsbs%3D 10.1038/364121a0
    • MM Wang RR Reed 1993 Molecular cloning of the olfactory neuronal transcription factor Olf-1 by genetic selection in yeast Nature 364 121 126 8321284 1:CAS:528:DyaK3sXlsFaqsbs%3D 10.1038/364121a0
    • (1993) Nature , vol.364 , pp. 121-126
    • Wang, M.M.1    Reed, R.R.2
  • 62
    • 0033557224 scopus 로고    scopus 로고
    • Yeast forward and reverse "n"-hybrid systems
    • 9927722 1:CAS:528:DyaK1MXhvVyisb8%3D 10.1093/nar/27.4.919
    • M Vidal P Legrain 1999 Yeast forward and reverse "n"-hybrid systems Nucleic Acids Res 27 919 929 9927722 1:CAS:528:DyaK1MXhvVyisb8%3D 10.1093/nar/27.4.919
    • (1999) Nucleic Acids Res , vol.27 , pp. 919-929
    • Vidal, M.1    Legrain, P.2
  • 63
    • 84862807756 scopus 로고
    • Matchmaker™ one-hybrid system. Clontech Accessed26August,2011
    • -(1995) In fusion cloning-infinite possibilities. Matchmaker™ one-hybrid system. Clontech. www.danyel.co.il/fileserver.php?file=168. Accessed 26 August, 2011
    • (1995) Fusion Cloning-infinite Possibilities
  • 64
    • 0035232321 scopus 로고    scopus 로고
    • One-hybrid systems for detecting protein-DNA interactions
    • 11530610 1:CAS:528:DC%2BD3MXkslKjtbg%3D
    • MK Alexander BD Bourns VA Zakian 2001 One-hybrid systems for detecting protein-DNA interactions Methods Mol Biol 177 241 259 11530610 1:CAS:528:DC%2BD3MXkslKjtbg%3D
    • (2001) Methods Mol Biol , vol.177 , pp. 241-259
    • Alexander, M.K.1    Bourns, B.D.2    Zakian, V.A.3
  • 65
    • 0029809862 scopus 로고    scopus 로고
    • Reverse two-hybrid and one-hybrid systems to detect dissociation of protein-protein and DNA-protein interaction
    • 8816797 1:CAS:528:DyaK28XlslGkur8%3D 10.1073/pnas.93.19.10315
    • M Vidal RK Brachmann A Fattaey E Harlow JD Boeke 1996 Reverse two-hybrid and one-hybrid systems to detect dissociation of protein-protein and DNA-protein interaction Proc Natl Acad Sci 93 10315 10320 8816797 1:CAS:528: DyaK28XlslGkur8%3D 10.1073/pnas.93.19.10315
    • (1996) Proc Natl Acad Sci , vol.93 , pp. 10315-10320
    • Vidal, M.1    Brachmann, R.K.2    Fattaey, A.3    Harlow, E.4    Boeke, J.D.5
  • 66
    • 0035222716 scopus 로고    scopus 로고
    • Engineering nucleic acid-binding proteins by phage display
    • 11357603 1:CAS:528:DC%2BD3MXivV2ns7Y%3D
    • M Isalan Y Choo 2001 Engineering nucleic acid-binding proteins by phage display Methods Mol Biol 148 417 429 11357603 1:CAS:528:DC%2BD3MXivV2ns7Y%3D
    • (2001) Methods Mol Biol , vol.148 , pp. 417-429
    • Isalan, M.1    Choo, Y.2
  • 67
    • 0346982051 scopus 로고    scopus 로고
    • Phage display
    • 11848876 1:CAS:528:DyaK2sXhslamtb8%3D 10.1021/cr960065d
    • GP Smith VA Petrenko 1997 Phage display Chem Rev 97 391 410 11848876 1:CAS:528:DyaK2sXhslamtb8%3D 10.1021/cr960065d
    • (1997) Chem Rev , vol.97 , pp. 391-410
    • Smith, G.P.1    Petrenko, V.A.2
  • 68
    • 0028328872 scopus 로고
    • Zinc finger phage: Affinity selection of fingers with new DNA-binding specificities
    • 8303274 1:CAS:528:DyaK2cXhsFOisr4%3D 10.1126/science.8303274
    • EJ Rebar CO Pabo 1994 Zinc finger phage: affinity selection of fingers with new DNA-binding specificities Science 263 671 673 8303274 1:CAS:528:DyaK2cXhsFOisr4%3D 10.1126/science.8303274
    • (1994) Science , vol.263 , pp. 671-673
    • Rebar, E.J.1    Pabo, C.O.2
  • 69
    • 0028227930 scopus 로고
    • In vitro selection of zinc fingers with altered DNA-binding specificity
    • 8180194 1:CAS:528:DyaK2cXktVagur4%3D 10.1021/bi00185a004
    • AC Jamieson S Kim JA Wells 1994 In vitro selection of zinc fingers with altered DNA-binding specificity Biochemistry 33 5689 5695 8180194 1:CAS:528:DyaK2cXktVagur4%3D 10.1021/bi00185a004
    • (1994) Biochemistry , vol.33 , pp. 5689-5695
    • Jamieson, A.C.1    Kim, S.2    Wells, J.A.3
  • 70
    • 0027994717 scopus 로고
    • Toward a code for the interactions of zinc fingers with DNA: Selection of randomized fingers displayed on phage
    • 7972027 1:CAS:528:DyaK2MXitV2rt7g%3D 10.1073/pnas.91.23.11163
    • Y Choo A Klug 1994 Toward a code for the interactions of zinc fingers with DNA: selection of randomized fingers displayed on phage Proc Natl Acad Sci 91 11163 11167 7972027 1:CAS:528:DyaK2MXitV2rt7g%3D 10.1073/pnas.91.23.11163
    • (1994) Proc Natl Acad Sci , vol.91 , pp. 11163-11167
    • Choo, Y.1    Klug, A.2
  • 71
    • 0028888530 scopus 로고
    • Building zinc fingers by selection: Toward a therapeutic application
    • 7831288 1:CAS:528:DyaK2MXjt12qs7g%3D 10.1073/pnas.92.2.344
    • H Wu WP Yang CF Barbas 1995 Building zinc fingers by selection: toward a therapeutic application Proc Natl Acad Sci 92 344 348 7831288 1:CAS:528:DyaK2MXjt12qs7g%3D 10.1073/pnas.92.2.344
    • (1995) Proc Natl Acad Sci , vol.92 , pp. 344-348
    • Wu, H.1    Yang, W.P.2    Barbas, C.F.3
  • 72
    • 0029942895 scopus 로고    scopus 로고
    • Phage display methods for selecting zinc finger proteins with novel DNA-binding specificities
    • J.N. Abelson (eds). 8 Academic Press San Diego
    • Rebar EJ, Greisman HA, Pabo CO (1996) Phage display methods for selecting zinc finger proteins with novel DNA-binding specificities. In: Abelson JN (ed) Combinatorial chemistry, 8th edn. Academic Press, San Diego, pp 129-149
    • (1996) Combinatorial Chemistry , pp. 129-149
    • Rebar, E.J.1    Greisman, H.A.2    Pabo, C.O.3
  • 73
    • 0029134134 scopus 로고
    • Designing DNA-binding proteins on the surface of filamentous phage
    • 1:CAS:528:DyaK2MXntlCiuro%3D 10.1016/0958-1669(95)80073-5
    • Y Choo A Klug 1995 Designing DNA-binding proteins on the surface of filamentous phage Cur Opin Biotechnol 6 431 436 1:CAS:528:DyaK2MXntlCiuro%3D 10.1016/0958-1669(95)80073-5
    • (1995) Cur Opin Biotechnol , vol.6 , pp. 431-436
    • Choo, Y.1    Klug, A.2
  • 74
    • 33847614301 scopus 로고    scopus 로고
    • In vitro analysis of DNA-protein interactions by proximity ligation
    • 17360610 1:CAS:528:DC%2BD2sXjtVWls7w%3D 10.1073/pnas.0611229104
    • SM Gustafsdottir J Schlingemann AR Iglesias Edith, et al. 2007 In vitro analysis of DNA-protein interactions by proximity ligation Proc Natl Acad Sci 104 3067 3072 17360610 1:CAS:528:DC%2BD2sXjtVWls7w%3D 10.1073/pnas.0611229104
    • (2007) Proc Natl Acad Sci , vol.104 , pp. 3067-3072
    • Gustafsdottir, S.M.1    Schlingemann, J.2    Iglesias, A.R.3    Edith4
  • 75
    • 34848917292 scopus 로고    scopus 로고
    • In situ detection of phosphorylated platelet-derived growth factor receptor beta using a generalized proximity ligation method
    • 17565975 1:CAS:528:DC%2BD2sXhtVGqsrzO 10.1074/mcp.M700166-MCP200
    • M Jarvius U Landegren O Söderberg, et al. 2007 In situ detection of phosphorylated platelet-derived growth factor receptor beta using a generalized proximity ligation method Mol Cell Proteomics 6 1500 1509 17565975 1:CAS:528:DC%2BD2sXhtVGqsrzO 10.1074/mcp.M700166-MCP200
    • (2007) Mol Cell Proteomics , vol.6 , pp. 1500-1509
    • Jarvius, M.1    Landegren, U.2    Söderberg, O.3
  • 76
    • 33751252292 scopus 로고    scopus 로고
    • Direct observation of individual endogenous protein complexes in situ by proximity ligation
    • 10.1038/nmeth947 1:CAS:528:DC%2BD28Xht1WqurfE
    • U SO Landegren, et al. 2006 Direct observation of individual endogenous protein complexes in situ by proximity ligation Nat Methods 3 995 1000 10.1038/nmeth947 1:CAS:528:DC%2BD28Xht1WqurfE
    • (2006) Nat Methods , vol.3 , pp. 995-1000
    • Landegren U, S.O.1
  • 77
    • 33646510364 scopus 로고    scopus 로고
    • Genome-wide analysis of protein-DNA interactions
    • 10.1146/annurev.genom.7.080505.115634 1:CAS:528:DC%2BD28Xht1WgsrzK
    • TH Kim B Ren 2006 Genome-wide analysis of protein-DNA interactions Annu Rev Genom Hum G 7 81 102 10.1146/annurev.genom.7.080505.115634 1:CAS:528:DC%2BD28Xht1WgsrzK
    • (2006) Annu Rev Genom Hum G , vol.7 , pp. 81-102
    • Kim, T.H.1    Ren, B.2
  • 78
    • 33749164424 scopus 로고    scopus 로고
    • Functional analysis of p53 binding under differential stresses
    • 16980608 1:CAS:528:DC%2BD28XhtVCltbnJ 10.1128/MCB.00322-06
    • AJ Krieg EM Hammond AJ Giaccia 2006 Functional analysis of p53 binding under differential stresses Mol Cell Biol 26 7030 7045 16980608 1:CAS:528:DC%2BD28XhtVCltbnJ 10.1128/MCB.00322-06
    • (2006) Mol Cell Biol , vol.26 , pp. 7030-7045
    • Krieg, A.J.1    Hammond, E.M.2    Giaccia, A.J.3
  • 79
    • 33747692275 scopus 로고    scopus 로고
    • Regulation of murine TGFβ2 by Pax3 during early embryonic development
    • 16787918 1:CAS:528:DC%2BD28Xot1eqtrk%3D 10.1074/jbc.M512449200
    • CS Mayanil A Pool H Nakazaki, et al. 2006 Regulation of murine TGFβ2 by Pax3 during early embryonic development J Biol Chem 281 24544 24552 16787918 1:CAS:528:DC%2BD28Xot1eqtrk%3D 10.1074/jbc.M512449200
    • (2006) J Biol Chem , vol.281 , pp. 24544-24552
    • Mayanil, C.S.1    Pool, A.2    Nakazaki, H.3
  • 80
    • 33749554134 scopus 로고    scopus 로고
    • Characterization of distant enhancers and promoters in the albumin-α-fetoprotein locus during active and silenced expression
    • 16893898 1:CAS:528:DC%2BD28XhtVahsbvN 10.1074/jbc.M603491200
    • Y Kajiyama J Tian J Locker 2006 Characterization of distant enhancers and promoters in the albumin-α-fetoprotein locus during active and silenced expression J Biol Chem 281 30122 30131 16893898 1:CAS:528:DC%2BD28XhtVahsbvN 10.1074/jbc.M603491200
    • (2006) J Biol Chem , vol.281 , pp. 30122-30131
    • Kajiyama, Y.1    Tian, J.2    Locker, J.3
  • 81
    • 8644232564 scopus 로고    scopus 로고
    • Progress and challenges in profiling the dynamics of chromatin and transcription factor binding with DNA microarrays
    • 15531167 1:CAS:528:DC%2BD2cXpsVOrtLg%3D 10.1016/j.gde.2004.09.008
    • SE Hanlon JD Lieb 2004 Progress and challenges in profiling the dynamics of chromatin and transcription factor binding with DNA microarrays Curr Opin Genet Dev 14 697 705 15531167 1:CAS:528:DC%2BD2cXpsVOrtLg%3D 10.1016/j.gde.2004.09.008
    • (2004) Curr Opin Genet Dev , vol.14 , pp. 697-705
    • Hanlon, S.E.1    Lieb, J.D.2
  • 82
    • 13444278955 scopus 로고    scopus 로고
    • Genomic studies of transcription factor-DNA interactions
    • 15701451 1:CAS:528:DC%2BD2MXhtV2ksro%3D 10.1016/j.cbpa.2004.12.008
    • D Sikder T Kodadek 2005 Genomic studies of transcription factor-DNA interactions Curr Opin Chem Biol 9 38 45 15701451 1:CAS:528:DC%2BD2MXhtV2ksro%3D 10.1016/j.cbpa.2004.12.008
    • (2005) Curr Opin Chem Biol , vol.9 , pp. 38-45
    • Sikder, D.1    Kodadek, T.2
  • 83
    • 33645381936 scopus 로고    scopus 로고
    • The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells
    • 16518401 1:CAS:528:DC%2BD28XivFSht7c%3D 10.1038/ng1760
    • YH Loh Q Wu JL Chew, et al. 2006 The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells Nat Genet 38 431 440 16518401 1:CAS:528:DC%2BD28XivFSht7c%3D 10.1038/ng1760
    • (2006) Nat Genet , vol.38 , pp. 431-440
    • Loh, Y.H.1    Wu, Q.2    Chew, J.L.3
  • 84
    • 34249026300 scopus 로고    scopus 로고
    • High-resolution profiling of histone methylations in the human genome
    • 17512414 1:CAS:528:DC%2BD2sXmtFKjsro%3D 10.1016/j.cell.2007.05.009
    • A Barski S Cuddapah K Cui TY Roh DE Schones Z Wang G Wei I Chepelev K Zhao 2007 High-resolution profiling of histone methylations in the human genome Cell 129 823 837 17512414 1:CAS:528:DC%2BD2sXmtFKjsro%3D 10.1016/j.cell.2007.05. 009
    • (2007) Cell , vol.129 , pp. 823-837
    • Barski, A.1    Cuddapah, S.2    Cui, K.3    Roh, T.Y.4    Schones, D.E.5    Wang, Z.6    Wei, G.7    Chepelev, I.8    Zhao, K.9
  • 85
    • 36248953882 scopus 로고    scopus 로고
    • Chromatin immunoprecipitation: Optimization, quantitative analysis and data normalization
    • 17892552 10.1186/1746-4811-3-11 1:CAS:528:DC%2BD2sXhtl2rs7nN
    • M Haring S Offermann T Danker I Horst C Peterhansel M Stam 2007 Chromatin immunoprecipitation: optimization, quantitative analysis and data normalization Plant methods 3 11 17892552 10.1186/1746-4811-3-11 1:CAS:528:DC%2BD2sXhtl2rs7nN
    • (2007) Plant Methods , vol.3 , pp. 11
    • Haring, M.1    Offermann, S.2    Danker, T.3    Horst, I.4    Peterhansel, C.5    Stam, M.6
  • 86
    • 0043171067 scopus 로고    scopus 로고
    • Chromatin immunoprecipitation: A tool for studying histone acetylation and transcription factor binding
    • 12893175 1:CAS:528:DC%2BD3sXlvVKjsL4%3D 10.1016/S1046-2023(03)00089-6
    • V Spencer 2003 Chromatin immunoprecipitation: a tool for studying histone acetylation and transcription factor binding Methods 31 67 75 12893175 1:CAS:528:DC%2BD3sXlvVKjsL4%3D 10.1016/S1046-2023(03)00089-6
    • (2003) Methods , vol.31 , pp. 67-75
    • Spencer, V.1
  • 87
    • 10044219622 scopus 로고    scopus 로고
    • Chromatin immunoprecipitation assay
    • DM Partha K Ramachandran 2004 Chromatin immunoprecipitation assay Biotechniques 37 961 969
    • (2004) Biotechniques , vol.37 , pp. 961-969
    • Partha, D.M.1    Ramachandran, K.2
  • 88
    • 34047198759 scopus 로고    scopus 로고
    • In vivo dual cross-linking for identification of indirect DNA-associated proteins by chromatin immunoprecipitation
    • 17191611 1:CAS:528:DC%2BD28XhtlGjur3K 10.2144/000112297
    • PY Zeng CR Vakoc ZC Chen GA Blobel SL Berger 2006 In vivo dual cross-linking for identification of indirect DNA-associated proteins by chromatin immunoprecipitation Biotechniques 41 694 698 17191611 1:CAS:528:DC%2BD28XhtlGjur3K 10.2144/000112297
    • (2006) Biotechniques , vol.41 , pp. 694-698
    • Zeng, P.Y.1    Vakoc, C.R.2    Chen, Z.C.3    Blobel, G.A.4    Berger, S.L.5
  • 89
    • 84862797536 scopus 로고    scopus 로고
    • Chromatin immunoprecipitation. Chapter 6: 20-23 Accessed26Aug2011
    • Promega Protein Interaction Guide (2011) Chromatin immunoprecipitation. Chapter 6: 20-23. http://www.promega.com/resources/product-guides-and-selectors/ protein-interaction-guide/. Accessed 26 Aug 2011
    • (2011) Promega Protein Interaction Guide
  • 90
    • 84862824967 scopus 로고    scopus 로고
    • Abcam Chromatin Team Accessed26Aug2011
    • Bannister A, Abcam Chromatin Team (2011) Chip tips. http://www.abcam.com/ index.html?rid=310. Accessed 26 Aug 2011
    • (2011) Chip Tips
    • Bannister, A.1
  • 91
    • 66149167455 scopus 로고    scopus 로고
    • ChIP-based methods for the identification of long-range chromatin interactions
    • 19247990 1:CAS:528:DC%2BD1MXlsFymtLo%3D 10.1002/jcb.22116
    • MJ Fullwood Y Ruan 2009 ChIP-based methods for the identification of long-range chromatin interactions J Cell Biochem 107 30 39 19247990 1:CAS:528:DC%2BD1MXlsFymtLo%3D 10.1002/jcb.22116
    • (2009) J Cell Biochem , vol.107 , pp. 30-39
    • Fullwood, M.J.1    Ruan, Y.2
  • 92
    • 0041668072 scopus 로고    scopus 로고
    • Immunoprecipitation of native chromatin: NChIP
    • 10.1016/S1046-2023(03)00090-2 1:CAS:528:DC%2BD3sXlvVKjsL8%3D
    • LP Neill BM Turner 2003 Immunoprecipitation of native chromatin: NChIP Methods 31 76 82 10.1016/S1046-2023(03)00090-2 1:CAS:528:DC%2BD3sXlvVKjsL8%3D
    • (2003) Methods , vol.31 , pp. 76-82
    • Neill, L.P.1    Turner, B.M.2
  • 93
    • 31544463601 scopus 로고    scopus 로고
    • Fast chromatin immunoprecipitation assay
    • 16397291 10.1093/nar/gnj004 1:CAS:528:DC%2BD28Xmsl2ktw%3D%3D
    • JD Nelson O Denisenko P Sova K Bomsztyk 2006 Fast chromatin immunoprecipitation assay Nucleic Acids Res 34 e2 16397291 10.1093/nar/gnj004 1:CAS:528:DC%2BD28Xmsl2ktw%3D%3D
    • (2006) Nucleic Acids Res , vol.34 , pp. 2
    • Nelson, J.D.1    Denisenko, O.2    Sova, P.3    Bomsztyk, K.4
  • 94
    • 33745549658 scopus 로고    scopus 로고
    • Epigenetic characterization of the early embryo with a chromatin immunoprecipitation protocol applicable to small cell populations
    • 10.1038/ng1820 1:CAS:528:DC%2BD28XmtFyru70%3D
    • LP Neill MD VerMilyea BM Turner 2006 Epigenetic characterization of the early embryo with a chromatin immunoprecipitation protocol applicable to small cell populations Nat Genet 38 835 841 10.1038/ng1820 1:CAS:528: DC%2BD28XmtFyru70%3D
    • (2006) Nat Genet , vol.38 , pp. 835-841
    • Neill, L.P.1    Vermilyea, M.D.2    Turner, B.M.3
  • 95
    • 39449114225 scopus 로고    scopus 로고
    • Microplate-based chromatin immunoprecipitation method, Matrix ChIP: A platform to study signaling of complex genomic events
    • 18203739 10.1093/nar/gkn001 1:CAS:528:DC%2BD1cXitVKksLw%3D
    • S Flanagin JD Nelson DG Castner O Denisenko K Bomsztyk 2008 Microplate-based chromatin immunoprecipitation method, Matrix ChIP: a platform to study signaling of complex genomic events Nucleic Acids Res 36 e17 18203739 10.1093/nar/gkn001 1:CAS:528:DC%2BD1cXitVKksLw%3D
    • (2008) Nucleic Acids Res , vol.36 , pp. 17
    • Flanagin, S.1    Nelson, J.D.2    Castner, D.G.3    Denisenko, O.4    Bomsztyk, K.5
  • 96
    • 0037439369 scopus 로고    scopus 로고
    • Optimizing anti-body immobilization strategies for the construction of protein microarrays
    • 12531195 1:CAS:528:DC%2BD3sXislyqtQ%3D%3D 10.1016/S0003-2697(02)00442-6
    • P Peluso DS Wilson D Do H Tran, et al. 2003 Optimizing anti-body immobilization strategies for the construction of protein microarrays Anal Biochem 312 113 124 12531195 1:CAS:528:DC%2BD3sXislyqtQ%3D%3D 10.1016/S0003-2697(02)00442-6
    • (2003) Anal Biochem , vol.312 , pp. 113-124
    • Peluso, P.1    Wilson, D.S.2    Do, D.3    Tran, H.4
  • 97
    • 34548396885 scopus 로고    scopus 로고
    • ChIP-chip: Data, model, and analysis
    • 17825010 1:CAS:528:DC%2BD2sXhtV2iurbK 10.1111/j.1541-0420.2007.00768.x
    • M Zheng LO Barrera B Ren YN Wu 2007 ChIP-chip: data, model, and analysis Biometrics 63 787 796 17825010 1:CAS:528:DC%2BD2sXhtV2iurbK 10.1111/j.1541-0420. 2007.00768.x
    • (2007) Biometrics , vol.63 , pp. 787-796
    • Zheng, M.1    Barrera, L.O.2    Ren, B.3    Wu, Y.N.4
  • 98
    • 55749094855 scopus 로고    scopus 로고
    • An integrated software system for analyzing ChIP-chip and ChIP-seq data
    • 18978777 1:CAS:528:DC%2BD1cXhtlCktrjM 10.1038/nbt.1505
    • H Ji H Jiang W Ma DS Johnson RM Myers WH Wong 2008 An integrated software system for analyzing ChIP-chip and ChIP-seq data Nat Biotechnol 26 1293 1300 18978777 1:CAS:528:DC%2BD1cXhtlCktrjM 10.1038/nbt.1505
    • (2008) Nat Biotechnol , vol.26 , pp. 1293-1300
    • Ji, H.1    Jiang, H.2    Ma, W.3    Johnson, D.S.4    Myers, R.M.5    Wong, W.H.6
  • 99
    • 33747587864 scopus 로고    scopus 로고
    • Model-based analysis of tiling-arrays for ChIP-chip
    • 16895995 1:CAS:528:DC%2BD28Xos1Kku7s%3D 10.1073/pnas.0601180103
    • WE Johnson W Li CA Meyer R Gottard JS Carroll M Brown XS Liu 2006 Model-based analysis of tiling-arrays for ChIP-chip Proc Natl Acad Sci 103 12457 12462 16895995 1:CAS:528:DC%2BD28Xos1Kku7s%3D 10.1073/pnas.0601180103
    • (2006) Proc Natl Acad Sci , vol.103 , pp. 12457-12462
    • Johnson, W.E.1    Li, W.2    Meyer, C.A.3    Gottard, R.4    Carroll, J.S.5    Brown, M.6    Liu, X.S.7
  • 100
    • 67849122301 scopus 로고    scopus 로고
    • Using ChIP-chip and ChIP-seq to study the regulation of gene expression: Genome-wide localization studies reveal widespread regulation of transcription elongation
    • 19275938 1:CAS:528:DC%2BD1MXpt1Kisrk%3D 10.1016/j.ymeth.2009.02.024
    • DA Gilchrist DC Fargo K Adelman 2009 Using ChIP-chip and ChIP-seq to study the regulation of gene expression: genome-wide localization studies reveal widespread regulation of transcription elongation Methods 48 398 408 19275938 1:CAS:528:DC%2BD1MXpt1Kisrk%3D 10.1016/j.ymeth.2009.02.024
    • (2009) Methods , vol.48 , pp. 398-408
    • Gilchrist, D.A.1    Fargo, D.C.2    Adelman, K.3
  • 101
    • 15544375816 scopus 로고    scopus 로고
    • DIP-chip: Rapid and accurate determination of DNA-binding specificity
    • 15710749 1:CAS:528:DC%2BD2MXitVWksbw%3D 10.1101/gr.3256505
    • X Liu DM Noll JD Lieb ND Clarke 2005 DIP-chip: rapid and accurate determination of DNA-binding specificity Genome Res 15 421 427 15710749 1:CAS:528:DC%2BD2MXitVWksbw%3D 10.1101/gr.3256505
    • (2005) Genome Res , vol.15 , pp. 421-427
    • Liu, X.1    Noll, D.M.2    Lieb, J.D.3    Clarke, N.D.4
  • 102
    • 53849146020 scopus 로고    scopus 로고
    • Model-based analysis of ChIP-seq (MACS)
    • 18798982 10.1186/gb-2008-9-9-r137 1:CAS:528:DC%2BD1cXhtl2ksrjE
    • Y Zhang T Liu CA Meyer J Eeckhoute, et al. 2008 Model-based analysis of ChIP-seq (MACS) Genome Biol 9 R137 18798982 10.1186/gb-2008-9-9-r137 1:CAS:528:DC%2BD1cXhtl2ksrjE
    • (2008) Genome Biol , vol.9 , pp. 137
    • Zhang, Y.1    Liu, T.2    Meyer, C.A.3    Eeckhoute, J.4
  • 103
    • 66149186985 scopus 로고    scopus 로고
    • Genomic location analysis by ChIP-seq
    • 19173299 1:CAS:528:DC%2BD1MXlsFymtLw%3D 10.1002/jcb.22077
    • A Barski K Zhao 2009 Genomic location analysis by ChIP-seq J Cell Biochem 107 11 18 19173299 1:CAS:528:DC%2BD1MXlsFymtLw%3D 10.1002/jcb.22077
    • (2009) J Cell Biochem , vol.107 , pp. 11-18
    • Barski, A.1    Zhao, K.2
  • 104
    • 77953348282 scopus 로고    scopus 로고
    • Q&A: ChIP-seq technologies and the study of gene regulation
    • 20529237 1:CAS:528:DC%2BC3cXmsFGjsLc%3D 10.1186/1741-7007-8-56
    • ET Liu S Pott M Huss 2010 Q&A: ChIP-seq technologies and the study of gene regulation BMC Biol 8 56 20529237 1:CAS:528:DC%2BC3cXmsFGjsLc%3D 10.1186/1741-7007-8-56
    • (2010) BMC Biol , vol.8 , pp. 56
    • Liu, E.T.1    Pott, S.2    Huss, M.3
  • 105
    • 3142745129 scopus 로고    scopus 로고
    • ChIP display: Novel method for identification of genomic targets of transcription factors
    • 10.1093/nar/gnh097 1:CAS:528:DC%2BD2cXlsl2ru70%3D
    • A Barski B Frenkel 2004 ChIP display: novel method for identification of genomic targets of transcription factors Nucleic Acids Res 32 12 10.1093/nar/gnh097 1:CAS:528:DC%2BD2cXlsl2ru70%3D
    • (2004) Nucleic Acids Res , vol.32 , pp. 12
    • Barski, A.1    Frenkel, B.2
  • 106
    • 44949138461 scopus 로고    scopus 로고
    • A rapid micro chromatin immunoprecipitation assay (microChIP)
    • 18536650 1:CAS:528:DC%2BD1cXmvVemt7o%3D 10.1038/nprot.2008.68
    • JA Dahl P Collas 2008 A rapid micro chromatin immunoprecipitation assay (microChIP) Nat Protoc 3 1032 1045 18536650 1:CAS:528:DC%2BD1cXmvVemt7o%3D 10.1038/nprot.2008.68
    • (2008) Nat Protoc , vol.3 , pp. 1032-1045
    • Dahl, J.A.1    Collas, P.2
  • 107
    • 34147171123 scopus 로고    scopus 로고
    • Q2ChIP, a quick and quantitative chromatin immunoprecipitation assay, unravels epigenetic dynamics of developmentally regulated genes in human carcinoma cells
    • 17272500 1:CAS:528:DC%2BD2sXls1Kmt7Y%3D 10.1634/stemcells.2006-0430
    • JA Dahl P Collas 2007 Q2ChIP, a quick and quantitative chromatin immunoprecipitation assay, unravels epigenetic dynamics of developmentally regulated genes in human carcinoma cells Stem cells 25 1037 1046 17272500 1:CAS:528:DC%2BD2sXls1Kmt7Y%3D 10.1634/stemcells.2006-0430
    • (2007) Stem Cells , vol.25 , pp. 1037-1046
    • Dahl, J.A.1    Collas, P.2
  • 108
    • 33747831899 scopus 로고    scopus 로고
    • DamID: Mapping of in vivo protein-genome interactions using tethered DNA adenine methyltransferase
    • 1:CAS:528:DC%2BD2sXmtV2ms78%3D 10.1016/S0076-6879(06)10016-6
    • F Greil C Moorman BV Steensel 2006 DamID: mapping of in vivo protein-genome interactions using tethered DNA adenine methyltransferase Method Enzymol 410 342 359 1:CAS:528:DC%2BD2sXmtV2ms78%3D 10.1016/S0076-6879(06)10016-6
    • (2006) Method Enzymol , vol.410 , pp. 342-359
    • Greil, F.1    Moorman, C.2    Steensel, B.V.3
  • 109
    • 73949138445 scopus 로고    scopus 로고
    • DamID: A methylation-based chromatin profiling approach chromatin immunoprecipitation assays
    • 19588092 1:CAS:528:DC%2BC3cXhvFWkt74%3D 10.1007/978-1-60327-414-2-11
    • M Abed D Kenyagin-Karsenti O Boico A Orian 2009 DamID: a methylation-based chromatin profiling approach chromatin immunoprecipitation assays Methods Mol Biol 567 155 169 19588092 1:CAS:528:DC%2BC3cXhvFWkt74%3D 10.1007/978-1-60327-414-2-11
    • (2009) Methods Mol Biol , vol.567 , pp. 155-169
    • Abed, M.1    Kenyagin-Karsenti, D.2    Boico, O.3    Orian, A.4
  • 110
    • 33644860335 scopus 로고    scopus 로고
    • Chromatin profiling, DamID and the emerging landscape of gene expression
    • 16503134 1:CAS:528:DC%2BD28Xis1eht78%3D 10.1016/j.gde.2006.02.008
    • A Orian 2006 Chromatin profiling, DamID and the emerging landscape of gene expression Curr Opin Genet Dev 16 157 164 16503134 1:CAS:528: DC%2BD28Xis1eht78%3D 10.1016/j.gde.2006.02.008
    • (2006) Curr Opin Genet Dev , vol.16 , pp. 157-164
    • Orian, A.1
  • 111
    • 73949133990 scopus 로고    scopus 로고
    • Chromosome conformation capture (from 3C to 5C) and Its ChIP-based modification chromatin immunoprecipitation assays
    • 19588093 1:CAS:528:DC%2BC3cXhvFWkt7w%3D 10.1007/978-1-60327-414-2-12
    • A Gavrilov E Eivazova I Pirozhkova M Lipinski S Razin Y Vassetzky 2009 Chromosome conformation capture (from 3C to 5C) and Its ChIP-based modification chromatin immunoprecipitation assays Methods Mol Biol 567 171 188 19588093 1:CAS:528:DC%2BC3cXhvFWkt7w%3D 10.1007/978-1-60327-414-2-12
    • (2009) Methods Mol Biol , vol.567 , pp. 171-188
    • Gavrilov, A.1    Eivazova, E.2    Pirozhkova, I.3    Lipinski, M.4    Razin, S.5    Vassetzky, Y.6
  • 112
    • 11244328520 scopus 로고    scopus 로고
    • Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome
    • 15608638 1:CAS:528:DC%2BD2MXksFeisb4%3D 10.1038/ng1570
    • S Horike S Cai M Miyano JF Cheng T Kohwi-Shigematsu 2005 Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome Nat Genet 37 31 40 15608638 1:CAS:528:DC%2BD2MXksFeisb4%3D 10.1038/ng1570
    • (2005) Nat Genet , vol.37 , pp. 31-40
    • Horike, S.1    Cai, S.2    Miyano, M.3    Cheng, J.F.4    Kohwi-Shigematsu, T.5
  • 113
    • 35748956435 scopus 로고    scopus 로고
    • An evaluation of 3C-based methods to capture DNA interactions
    • 17971780 1:CAS:528:DC%2BD2sXht1aqtbbK 10.1038/nmeth1114
    • M Simonis J Kooren WD Laat 2007 An evaluation of 3C-based methods to capture DNA interactions Nat Methods 4 895 17971780 1:CAS:528:DC%2BD2sXht1aqtbbK 10.1038/nmeth1114
    • (2007) Nat Methods , vol.4 , pp. 895
    • Simonis, M.1    Kooren, J.2    Laat, W.D.3
  • 114
    • 0037208166 scopus 로고    scopus 로고
    • TRANSFAC: Transcriptional regulation, from patterns to profiles
    • 12520026 1:CAS:528:DC%2BD3sXhvFSmtLY%3D 10.1093/nar/gkg108
    • V Matys E Fricke R Geffers E Göling, et al. 2003 TRANSFAC: transcriptional regulation, from patterns to profiles Nucleic Acids Res 31 374 378 12520026 1:CAS:528:DC%2BD3sXhvFSmtLY%3D 10.1093/nar/gkg108
    • (2003) Nucleic Acids Res , vol.31 , pp. 374-378
    • Matys, V.1    Fricke, E.2    Geffers, R.3    Göling, E.4
  • 115
    • 0035172256 scopus 로고    scopus 로고
    • The TRANSFAC system on gene expression regulation
    • 11125113 1:CAS:528:DC%2BD3MXjtlWmtL4%3D 10.1093/nar/29.1.281
    • E Wingender X Chen E Fricke R Geffers, et al. 2001 The TRANSFAC system on gene expression regulation Nucleic Acids Res 29 281 283 11125113 1:CAS:528:DC%2BD3MXjtlWmtL4%3D 10.1093/nar/29.1.281
    • (2001) Nucleic Acids Res , vol.29 , pp. 281-283
    • Wingender, E.1    Chen, X.2    Fricke, E.3    Geffers, R.4
  • 116
    • 77949596765 scopus 로고    scopus 로고
    • IDBPs: A web server for the identification of DNA binding proteins
    • 20089514 1:CAS:528:DC%2BC3cXis1Wnu78%3D 10.1093/bioinformatics/btq019
    • G Nimrod M Schushan A Szilágyi C Leslie N Ben-Tal 2010 iDBPs: a web server for the identification of DNA binding proteins Bioinformatics 26 692 693 20089514 1:CAS:528:DC%2BC3cXis1Wnu78%3D 10.1093/bioinformatics/btq019
    • (2010) Bioinformatics , vol.26 , pp. 692-693
    • Nimrod, G.1    Schushan, M.2    Szilágyi, A.3    Leslie, C.4    Ben-Tal, N.5
  • 117
    • 33846803179 scopus 로고    scopus 로고
    • DISPLAR: An accurate method for predicting DNA-binding sites on protein surfaces
    • 17284455 1:CAS:528:DC%2BD2sXktlSqur8%3D 10.1093/nar/gkm008
    • H Tjong H-X Zhou 2007 DISPLAR: an accurate method for predicting DNA-binding sites on protein surfaces Nucleic Acids Res 35 1465 1477 17284455 1:CAS:528:DC%2BD2sXktlSqur8%3D 10.1093/nar/gkm008
    • (2007) Nucleic Acids Res , vol.35 , pp. 1465-1477
    • Tjong, H.1    Zhou, H.-X.2
  • 118
    • 78651321628 scopus 로고    scopus 로고
    • FlyFactorSurvey: A database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system
    • 21097781 10.1093/nar/gkq858
    • LJ Zhu RG Christensen M Kazemian, et al. 2011 FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system Nucleic Acids Res 39 D111 D117 21097781 10.1093/nar/gkq858
    • (2011) Nucleic Acids Res , vol.39
    • Zhu, L.J.1    Christensen, R.G.2    Kazemian, M.3
  • 120
    • 25444517056 scopus 로고    scopus 로고
    • MAPPER: A search engine for the computational identification of putative transcription factor binding sites in multiple genomes
    • 15799782 10.1186/1471-2105-6-79 1:CAS:528:DC%2BD2MXksF2itLk%3D
    • VD Marinescu IS Kohane A Riva 2005 MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes BMC Bioinformatics 6 79 15799782 10.1186/1471-2105-6-79 1:CAS:528:DC%2BD2MXksF2itLk%3D
    • (2005) BMC Bioinformatics , vol.6 , pp. 79
    • Marinescu, V.D.1    Kohane, I.S.2    Riva, A.3
  • 121
    • 41149121985 scopus 로고    scopus 로고
    • ZIFIBI: Prediction of DNA binding sites for zinc finger proteins
    • 18325330 1:CAS:528:DC%2BD1cXktFeksLc%3D 10.1016/j.bbrc.2008.02.106
    • SY Cho M Chung M Park S Park YS Lee 2008 ZIFIBI: prediction of DNA binding sites for zinc finger proteins Biochem Biophys Res Commun 369 845 848 18325330 1:CAS:528:DC%2BD1cXktFeksLc%3D 10.1016/j.bbrc.2008.02.106
    • (2008) Biochem Biophys Res Commun , vol.369 , pp. 845-848
    • Cho, S.Y.1    Chung, M.2    Park, M.3    Park, S.4    Lee, Y.S.5
  • 122
    • 0035228215 scopus 로고    scopus 로고
    • Bioprospector: Discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes
    • X Liu DL Brutlag JS Liu 2001 Bioprospector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes Pac Symp Biocomput 6 127 138
    • (2001) Pac Symp Biocomput , vol.6 , pp. 127-138
    • Liu, X.1    Brutlag, D.L.2    Liu, J.S.3
  • 123
    • 33747828217 scopus 로고    scopus 로고
    • BindN: A web-based tool for efficient prediction of DNA and RNA binding sites in amino acid sequences
    • 16845003 1:CAS:528:DC%2BD28Xps1yht78%3D 10.1093/nar/gkl298
    • L Wang SJ Brown 2006 BindN: a web-based tool for efficient prediction of DNA and RNA binding sites in amino acid sequences Nucleic Acids Res 34 W243 W248 16845003 1:CAS:528:DC%2BD28Xps1yht78%3D 10.1093/nar/gkl298
    • (2006) Nucleic Acids Res , vol.34
    • Wang, L.1    Brown, S.J.2
  • 124
    • 77953886400 scopus 로고    scopus 로고
    • BindN+ for accurate prediction of DNA and RNA-binding residues from protein sequence features
    • 20522253 10.1186/1752-0509-4-S1-S3 1:CAS:528:DC%2BC3cXnt1Smsbc%3D
    • L Wang C Huang MQ Yang JY Yang 2010 BindN+ for accurate prediction of DNA and RNA-binding residues from protein sequence features BMC Syst Biol 4 S3 20522253 10.1186/1752-0509-4-S1-S3 1:CAS:528:DC%2BC3cXnt1Smsbc%3D
    • (2010) BMC Syst Biol , vol.4 , pp. 3
    • Wang, L.1    Huang, C.2    Yang, M.Q.3    Yang, J.Y.4
  • 125
    • 34047094501 scopus 로고    scopus 로고
    • DP-Bind: A web server for sequence-based prediction of DNA-binding residues in DNA-binding proteins
    • 17237068 1:CAS:528:DC%2BD2sXkt1GhsLk%3D 10.1093/bioinformatics/btl672
    • S Hwang Z Gou IB Kuznetsov 2007 DP-Bind: a web server for sequence-based prediction of DNA-binding residues in DNA-binding proteins Bioinformatics 23 634 636 17237068 1:CAS:528:DC%2BD2sXkt1GhsLk%3D 10.1093/bioinformatics/btl672
    • (2007) Bioinformatics , vol.23 , pp. 634-636
    • Hwang, S.1    Gou, Z.2    Kuznetsov, I.B.3
  • 126
    • 17444373556 scopus 로고    scopus 로고
    • PreDs: A server for predicting dsDNA-binding site on protein molecular surfaces
    • 15613393 10.1093/bioinformatics/bti232 1:CAS:528:DC%2BD2MXjtlGgsrw%3D
    • Y Tsuchiya K Kinoshita H Nakamura 2004 PreDs: a server for predicting dsDNA-binding site on protein molecular surfaces Bioinformatics 21 1721 1723 15613393 10.1093/bioinformatics/bti232 1:CAS:528:DC%2BD2MXjtlGgsrw%3D
    • (2004) Bioinformatics , vol.21 , pp. 1721-1723
    • Tsuchiya, Y.1    Kinoshita, K.2    Nakamura, H.3
  • 127
    • 0035176895 scopus 로고    scopus 로고
    • Thermodynamic database for protein-nucleic acid interactions (ProNIT)
    • 11724731 1:CAS:528:DC%2BD38XisFKqtA%3D%3D 10.1093/bioinformatics/17.11. 1027
    • P Prabakaran J An MM Gromiha S Selvaraj H Uedaira H Kono A Sarai 2001 Thermodynamic database for protein-nucleic acid interactions (ProNIT) Bioinformatics 17 1027 1034 11724731 1:CAS:528:DC%2BD38XisFKqtA%3D%3D 10.1093/bioinformatics/17.11.1027
    • (2001) Bioinformatics , vol.17 , pp. 1027-1034
    • Prabakaran, P.1    An, J.2    Gromiha, M.M.3    Selvaraj, S.4    Uedaira, H.5    Kono, H.6    Sarai, A.7
  • 128
    • 38549152777 scopus 로고    scopus 로고
    • DB-PABP: A database of polyanion-binding proteins
    • 17916573 1:CAS:528:DC%2BD1cXhtVWjsbk%3D 10.1093/nar/gkm784
    • J Fang Y Dong N Salamat-Miller CR Middaugh 2008 DB-PABP: a database of polyanion-binding proteins Nucleic Acids Res 36 D303 D306 17916573 1:CAS:528:DC%2BD1cXhtVWjsbk%3D 10.1093/nar/gkm784
    • (2008) Nucleic Acids Res , vol.36
    • Fang, J.1    Dong, Y.2    Salamat-Miller, N.3    Middaugh, C.R.4
  • 129
    • 67249090413 scopus 로고    scopus 로고
    • DNA-Prot: Identification of DNA binding proteins from protein sequence information using random forest
    • 19385697 1:CAS:528:DC%2BD1MXms1Gqt74%3D
    • KK Kumar G Pugalenthi PN Suganthan 2009 DNA-Prot: identification of DNA binding proteins from protein sequence information using random forest J Biomol Struct Dyn 26 679 686 19385697 1:CAS:528:DC%2BD1MXms1Gqt74%3D
    • (2009) J Biomol Struct Dyn , vol.26 , pp. 679-686
    • Kumar, K.K.1    Pugalenthi, G.2    Suganthan, P.N.3
  • 131
    • 0031196016 scopus 로고    scopus 로고
    • Simultaneous two-photon activation of type-I photodynamic therapy agents
    • 9277135 1:CAS:528:DyaK2sXlsVKktbY%3D 10.1111/j.1751-1097.1997.tb08636.x
    • WG Fisher WP Partridge Jr C Dees EA Wachter 1997 Simultaneous two-photon activation of type-I photodynamic therapy agents Photochem Photobiol 66 141 155 9277135 1:CAS:528:DyaK2sXlsVKktbY%3D 10.1111/j.1751-1097.1997.tb08636.x
    • (1997) Photochem Photobiol , vol.66 , pp. 141-155
    • Fisher, W.G.1    Partridge Jr., W.P.2    Dees, C.3    Wachter, E.A.4
  • 132
    • 0033598837 scopus 로고    scopus 로고
    • Fluorescence-intensity distribution analysis and its application in biomolecular detection technology
    • 10570145 1:CAS:528:DyaK1MXns1Oqtrg%3D 10.1073/pnas.96.24.13756
    • P Kask K Palo D Ullmann K Gall 1999 Fluorescence-intensity distribution analysis and its application in biomolecular detection technology Proc Natl Acad Sci 96 13756 13761 10570145 1:CAS:528:DyaK1MXns1Oqtrg%3D 10.1073/pnas.96.24. 13756
    • (1999) Proc Natl Acad Sci , vol.96 , pp. 13756-13761
    • Kask, P.1    Palo, K.2    Ullmann, D.3    Gall, K.4
  • 133
    • 54149116729 scopus 로고    scopus 로고
    • Capillary electrophoresis for the characterization of quantum dots after non-selective or selective bioconjugation with antibodies for immunoassay
    • 10.1186/1477-3155-6-10 1:CAS:528:DC%2BD1cXht1yhu7fI
    • M Pereira EPC Lai 2008 Capillary electrophoresis for the characterization of quantum dots after non-selective or selective bioconjugation with antibodies for immunoassay J Nanobiotechnol 6 10 10.1186/1477-3155-6-10 1:CAS:528:DC%2BD1cXht1yhu7fI
    • (2008) J Nanobiotechnol , vol.6 , pp. 10
    • Pereira, M.1    Lai, E.P.C.2
  • 134
    • 0036815766 scopus 로고    scopus 로고
    • Recent advances in fluorescence correlation spectroscopy
    • 12464316 10.1016/S0959-440X(02)00368-8
    • NL Thompson AM Lieto NW Allen 2002 Recent advances in fluorescence correlation spectroscopy Curr Opin Struct Biol 12 634 641 12464316 10.1016/S0959-440X(02)00368-8
    • (2002) Curr Opin Struct Biol , vol.12 , pp. 634-641
    • Thompson, N.L.1    Lieto, A.M.2    Allen, N.W.3
  • 135
    • 0033214286 scopus 로고    scopus 로고
    • Fluorescence polarization studies of affinity interactions in capillary electrophoresis
    • 10517142 1:CAS:528:DyaK1MXls1ajsbw%3D 10.1021/ac9902796
    • QH Wan XC Le 1999 Fluorescence polarization studies of affinity interactions in capillary electrophoresis Anal Chem 71 4183 4189 10517142 1:CAS:528:DyaK1MXls1ajsbw%3D 10.1021/ac9902796
    • (1999) Anal Chem , vol.71 , pp. 4183-4189
    • Wan, Q.H.1    Le, X.C.2
  • 136
    • 72449207021 scopus 로고    scopus 로고
    • Quantum dots enhanced ultrasensitive detection of DNA adducts
    • 19925008 1:CAS:528:DC%2BD1MXhsVClurjL 10.1021/ac9021105
    • Z Wang M Lu X Wang R Yin Y Song XC Le H Wang 2009 Quantum dots enhanced ultrasensitive detection of DNA adducts Anal Chem 81 10285 10289 19925008 1:CAS:528:DC%2BD1MXhsVClurjL 10.1021/ac9021105
    • (2009) Anal Chem , vol.81 , pp. 10285-10289
    • Wang, Z.1    Lu, M.2    Wang, X.3    Yin, R.4    Song, Y.5    Le, X.C.6    Wang, H.7
  • 137
    • 0032810181 scopus 로고    scopus 로고
    • Capillary electrophoresis coupled with laser-induced fluorescence polarization as a hybrid approach to ultrasensitive immunoassays
    • 10486766 1:CAS:528:DyaK1MXmtFeiu7s%3D 10.1016/S0021-9673(99)00711-6
    • QH Wan XC Le 1999 Capillary electrophoresis coupled with laser-induced fluorescence polarization as a hybrid approach to ultrasensitive immunoassays J Chromatogr A 853 555 562 10486766 1:CAS:528:DyaK1MXmtFeiu7s%3D 10.1016/S0021-9673(99)00711-6
    • (1999) J Chromatogr A , vol.853 , pp. 555-562
    • Wan, Q.H.1    Le, X.C.2
  • 138
    • 0021454425 scopus 로고
    • Analysis of time-resolved fluorescence anisotropy decays
    • 6743756 1:CAS:528:DyaL2cXltVSlsr4%3D 10.1016/S0006-3495(84)83997-1
    • AJ Cross GR Fleming 1984 Analysis of time-resolved fluorescence anisotropy decays Biophys J 46 45 56 6743756 1:CAS:528:DyaL2cXltVSlsr4%3D 10.1016/S0006-3495(84)83997-1
    • (1984) Biophys J , vol.46 , pp. 45-56
    • Cross, A.J.1    Fleming, G.R.2
  • 139
    • 6444224645 scopus 로고
    • Flexibility of enzymes suspended in organic solvents probed by time-resolved fluorescence anisotropy. Evidence that enzyme activity and enantioselectivity are directly related to enzyme flex
    • 1:CAS:528:DyaK2MXpslChtL8%3D 10.1021/ja00156a001
    • J Broos AJWG Visser JFJ Engbersen W Verboom A Vanhoek DN Reinhoudt 1995 Flexibility of enzymes suspended in organic solvents probed by time-resolved fluorescence anisotropy. Evidence that enzyme activity and enantioselectivity are directly related to enzyme flex J Am Chem Soc 117 12657 12663 1:CAS:528:DyaK2MXpslChtL8%3D 10.1021/ja00156a001
    • (1995) J Am Chem Soc , vol.117 , pp. 12657-12663
    • Broos, J.1    Visser, A.J.W.G.2    Engbersen, J.F.J.3    Verboom, W.4    Vanhoek, A.5    Reinhoudt, D.N.6
  • 140
    • 0025086962 scopus 로고
    • Detection of protein-DNA complex formation by time-resolved fluorescence depolarization of bound ethidium bromide
    • 2291477 1:CAS:528:DyaK3MXhs1Sit7w%3D 10.1016/0003-2697(90)90204-M
    • J Cook G Holtom 1990 Detection of protein-DNA complex formation by time-resolved fluorescence depolarization of bound ethidium bromide Anal Biochem 190 331 339 2291477 1:CAS:528:DyaK3MXhs1Sit7w%3D 10.1016/0003-2697(90)90204-M
    • (1990) Anal Biochem , vol.190 , pp. 331-339
    • Cook, J.1    Holtom, G.2
  • 141
    • 0025883062 scopus 로고
    • Gel electrophoresis using a fluorescence agent for analysis and purification of non-labeled synthetic DNA fragments
    • 1861994 1:CAS:528:DyaK3MXltlWitLo%3D 10.1093/nar/19.14.4003
    • I Hirao S Yoshizawa K Miura 1991 Gel electrophoresis using a fluorescence agent for analysis and purification of non-labeled synthetic DNA fragments Nucleic Acids Res 19 4003 1861994 1:CAS:528:DyaK3MXltlWitLo%3D 10.1093/nar/19.14.4003
    • (1991) Nucleic Acids Res , vol.19 , pp. 4003
    • Hirao, I.1    Yoshizawa, S.2    Miura, K.3
  • 142
    • 33748352955 scopus 로고    scopus 로고
    • Quantitative analysis of DNA-protein interactions using double-labeled native gel electrophoresis and fluorescence-based imaging
    • 16915571 1:CAS:528:DC%2BD28XptlSgtrs%3D 10.1002/elps.200500872
    • JK Forwood DA Jans 2006 Quantitative analysis of DNA-protein interactions using double-labeled native gel electrophoresis and fluorescence-based imaging Electrophoresis 27 3166 3170 16915571 1:CAS:528:DC%2BD28XptlSgtrs%3D 10.1002/elps.200500872
    • (2006) Electrophoresis , vol.27 , pp. 3166-3170
    • Forwood, J.K.1    Jans, D.A.2
  • 143
    • 73149086622 scopus 로고    scopus 로고
    • A highly sensitive near-infrared fluorescent detection method to analyze signalling pathways by reverse-phase protein array
    • 19834902 1:CAS:528:DC%2BD1MXhsF2isb%2FE 10.1002/pmic.200900209
    • L Dupuy C Gauthier G Durand A Musnier D Heitzler A Herledan V Sakanyan P Crépieux E Reiter 2009 A highly sensitive near-infrared fluorescent detection method to analyze signalling pathways by reverse-phase protein array Proteomics 9 5446 5454 19834902 1:CAS:528:DC%2BD1MXhsF2isb%2FE 10.1002/pmic.200900209
    • (2009) Proteomics , vol.9 , pp. 5446-5454
    • Dupuy, L.1    Gauthier, C.2    Durand, G.3    Musnier, A.4    Heitzler, D.5    Herledan, A.6    Sakanyan, V.7    Crépieux, P.8    Reiter, E.9
  • 144
    • 0037879150 scopus 로고    scopus 로고
    • Dissecting DNA-protein and protein-protein interactions involved in bacterial transcriptional regulation by a sensitive protein array method combining a near-infrared fluorescence detection
    • 12748944 1:CAS:528:DC%2BD3sXjvFGisLo%3D 10.1002/pmic.200300390
    • M Snapyan M Lecocq L Guével MC Arnaud A Ghochikyan V Sakanyan 2003 Dissecting DNA-protein and protein-protein interactions involved in bacterial transcriptional regulation by a sensitive protein array method combining a near-infrared fluorescence detection Proteomics 3 647 657 12748944 1:CAS:528:DC%2BD3sXjvFGisLo%3D 10.1002/pmic.200300390
    • (2003) Proteomics , vol.3 , pp. 647-657
    • Snapyan, M.1    Lecocq, M.2    Guével, L.3    Arnaud, M.C.4    Ghochikyan, A.5    Sakanyan, V.6
  • 145
    • 0037416207 scopus 로고    scopus 로고
    • Fluorescence resonance energy transfer (FRET) microscopy imaging of live cell protein localizations
    • 12615908 1:CAS:528:DC%2BD3sXhvFWlsr8%3D 10.1083/jcb.200210140
    • RB Sekar A Periasamy 2003 Fluorescence resonance energy transfer (FRET) microscopy imaging of live cell protein localizations J Cell Biol 160 629 633 12615908 1:CAS:528:DC%2BD3sXhvFWlsr8%3D 10.1083/jcb.200210140
    • (2003) J Cell Biol , vol.160 , pp. 629-633
    • Sekar, R.B.1    Periasamy, A.2
  • 146
    • 67649107394 scopus 로고    scopus 로고
    • Functional studies of DNA-protein interactions using FRET techniques
    • 19378182 1:CAS:528:DC%2BD1MXmvVSrtb0%3D 10.1007/978-1-60327-015-1-28
    • S Blouin TD Craggs DA Lafontaine JC Penedo 2009 Functional studies of DNA-protein interactions using FRET techniques Methods Mol Biol 543 475 502 19378182 1:CAS:528:DC%2BD1MXmvVSrtb0%3D 10.1007/978-1-60327-015-1-28
    • (2009) Methods Mol Biol , vol.543 , pp. 475-502
    • Blouin, S.1    Craggs, T.D.2    Lafontaine, D.A.3    Penedo, J.C.4
  • 147
    • 0032922213 scopus 로고    scopus 로고
    • Intercellular trafficking of VP22-GFP fusion proteins
    • 10341888 1:CAS:528:DyaK1MXltFWksA%3D%3D 10.1038/sj.gt.3300850
    • G Elliott P O'Hare 1999 Intercellular trafficking of VP22-GFP fusion proteins Gene Ther 6 149 151 10341888 1:CAS:528:DyaK1MXltFWksA%3D%3D 10.1038/sj.gt.3300850
    • (1999) Gene Ther , vol.6 , pp. 149-151
    • Elliott, G.1    O'Hare, P.2
  • 148
    • 34248512078 scopus 로고    scopus 로고
    • Fluorescence lifetime imaging microscopy
    • 17519182 1:CAS:528:DC%2BD1cXhsVektLY%3D 10.1016/S0091-679X(06)81024-1
    • CW Chang D Sud MA Mycek 2007 Fluorescence lifetime imaging microscopy Methods Cell Biol 81 495 524 17519182 1:CAS:528:DC%2BD1cXhsVektLY%3D 10.1016/S0091-679X(06)81024-1
    • (2007) Methods Cell Biol , vol.81 , pp. 495-524
    • Chang, C.W.1    Sud, D.2    Mycek, M.A.3
  • 149
    • 24944591864 scopus 로고    scopus 로고
    • Imaging in situ protein-DNA interactions in the cell nucleus using FRET-FLIM
    • 16040027 1:CAS:528:DC%2BD2MXhtVWnsbfN 10.1016/j.yexcr.2005.06.007
    • FGE Cremazy EMM Manders PIH Bastiaens, et al. 2005 Imaging in situ protein-DNA interactions in the cell nucleus using FRET-FLIM Exp Cell Res 309 390 396 16040027 1:CAS:528:DC%2BD2MXhtVWnsbfN 10.1016/j.yexcr.2005.06.007
    • (2005) Exp Cell Res , vol.309 , pp. 390-396
    • Cremazy, F.G.E.1    Manders, E.M.M.2    Bastiaens, P.I.H.3
  • 150
    • 0026128946 scopus 로고
    • Studying DNA-protein interactions using NMR
    • 1367095 1:CAS:528:DyaK3MXmtVaitLo%3D 10.1016/0167-7799(91)90032-D
    • IM Russu 1991 Studying DNA-protein interactions using NMR Trends Biotechnol 9 96 104 1367095 1:CAS:528:DyaK3MXmtVaitLo%3D 10.1016/0167-7799(91) 90032-D
    • (1991) Trends Biotechnol , vol.9 , pp. 96-104
    • Russu, I.M.1
  • 151
    • 79960109313 scopus 로고    scopus 로고
    • Nuclear magnetic resonance analysis of protein-DNA interactions
    • 1:CAS:528:DC%2BC3MXhtVynsbfK 10.1098/rsif.2010.0543
    • S Campagne V Gervais A Milon 2011 Nuclear magnetic resonance analysis of protein-DNA interactions J R Soc Interf 8 1065 1078 1:CAS:528:DC%2BC3MXhtVynsbfK 10.1098/rsif.2010.0543
    • (2011) J R Soc Interf , vol.8 , pp. 1065-1078
    • Campagne, S.1    Gervais, V.2    Milon, A.3
  • 152
    • 0033027096 scopus 로고    scopus 로고
    • Identification of the DNA binding surface of H-NS protein from Escherichia coli by heteronuclear NMR spectroscopy
    • 10.1016/S0014-5793(99)00862-5
    • H Shindoa A Ohnukia H Ginbaa E Katohb C Ueguchic T Mizunoc T Yamazakib 1999 Identification of the DNA binding surface of H-NS protein from Escherichia coli by heteronuclear NMR spectroscopy FEBS Lett 455 63 69 10.1016/S0014- 5793(99)00862-5
    • (1999) FEBS Lett , vol.455 , pp. 63-69
    • Shindoa, H.1    Ohnukia, A.2    Ginbaa, H.3    Katohb, E.4    Ueguchic, C.5    Mizunoc, T.6    Yamazakib, T.7
  • 153
    • 0034767343 scopus 로고    scopus 로고
    • Determining binding sites in protein-nucleic acid complexes by cross-saturation
    • 11727976 1:CAS:528:DC%2BD3MXosV2hur4%3D 10.1023/A:1012486527215
    • AN Lane G Kelly A Ramos TA Frenkiel 2001 Determining binding sites in protein-nucleic acid complexes by cross-saturation J Biomol NMR 21 127 139 11727976 1:CAS:528:DC%2BD3MXosV2hur4%3D 10.1023/A:1012486527215
    • (2001) J Biomol NMR , vol.21 , pp. 127-139
    • Lane, A.N.1    Kelly, G.2    Ramos, A.3    Frenkiel, T.A.4
  • 154
    • 0028959773 scopus 로고
    • Circular dichroism
    • 7538625 1:CAS:528:DyaK2MXmt1Kmsrw%3D 10.1016/0076-6879(95)46006-3
    • RW Woody 1995 Circular dichroism Methods Enzymol 246 34 71 7538625 1:CAS:528:DyaK2MXmt1Kmsrw%3D 10.1016/0076-6879(95)46006-3
    • (1995) Methods Enzymol , vol.246 , pp. 34-71
    • Woody, R.W.1
  • 155
    • 0034584873 scopus 로고    scopus 로고
    • The use of circular dichroism in the investigation of protein structure and function
    • 12369905 1:CAS:528:DC%2BD3MXns1ehtw%3D%3D 10.2174/1389203003381315
    • SM Kelly NC Price 2000 The use of circular dichroism in the investigation of protein structure and function Curr Protein Pept Sci 1 349 384 12369905 1:CAS:528:DC%2BD3MXns1ehtw%3D%3D 10.2174/1389203003381315
    • (2000) Curr Protein Pept Sci , vol.1 , pp. 349-384
    • Kelly, S.M.1    Price, N.C.2
  • 156
    • 44249127271 scopus 로고    scopus 로고
    • Characterization of DNA structures by circular dichroism
    • P. Herdewijn A. Matusda Y.S. Sanghvi M. Egli (eds). Wiley-Liss Inc. New York
    • Bishop GR, Chaires JB (2003) Characterization of DNA structures by circular dichroism. In: Herdewijn P, Matusda A, Sanghvi YS, Egli M (eds) Current protocols in nucleic acid chemistry. Wiley-Liss Inc., New York
    • (2003) Current Protocols in Nucleic Acid Chemistry
    • Bishop, G.R.1    Chaires, J.B.2
  • 157
    • 35448957157 scopus 로고    scopus 로고
    • Circular dichroism and its application to the study of biomolecules
    • 17964935 1:CAS:528:DC%2BD1cXht1amtLk%3D 10.1016/S0091-679X(07)84010-6
    • SR Martin MJ Schilstra 2008 Circular dichroism and its application to the study of biomolecules Methods Cell Biol 84 263 293 17964935 1:CAS:528:DC%2BD1cXht1amtLk%3D 10.1016/S0091-679X(07)84010-6
    • (2008) Methods Cell Biol , vol.84 , pp. 263-293
    • Martin, S.R.1    Schilstra, M.J.2
  • 158
    • 0025878525 scopus 로고
    • Structural properties of long- and short-chain alcohol dehydrogenases. Contribution of NAD+ to stability
    • LRD Pouplana S Atrian RG Duarte LAF Gilmore SM Kelly NC Price 1991 Structural properties of long- and short-chain alcohol dehydrogenases. Contribution of NAD+ to stability Biochem J 276 433 438
    • (1991) Biochem J , vol.276 , pp. 433-438
    • Pouplana, L.R.D.1    Atrian, S.2    Duarte, R.G.3    Gilmore, L.A.F.4    Kelly, S.M.5    Price, N.C.6
  • 159
    • 0012618901 scopus 로고
    • Atomic force microscope
    • 10.1103/PhysRevLett.56.930
    • G Binnig CF Quate 1986 Atomic force microscope Phys Rev Lett 6 930 933 10.1103/PhysRevLett.56.930
    • (1986) Phys Rev Lett , vol.6 , pp. 930-933
    • Binnig, G.1    Quate, C.F.2
  • 160
    • 77449089083 scopus 로고    scopus 로고
    • Atomic force microscopy comes of age
    • 1:CAS:528:DC%2BC3cXhvFWntA%3D%3D
    • LW Francis PD Lewis CJ Wright RS Conlan 2010 Atomic force microscopy comes of age Biol Cell 102 133 143 1:CAS:528:DC%2BC3cXhvFWntA%3D%3D
    • (2010) Biol Cell , vol.102 , pp. 133-143
    • Francis, L.W.1    Lewis, P.D.2    Wright, C.J.3    Conlan, R.S.4
  • 161
    • 67649099651 scopus 로고    scopus 로고
    • Atomic force microscopy imaging and probing of DNA, proteins, and protein DNA complexes: Silatrane surface chemistry
    • 19378175 1:CAS:528:DC%2BD1MXmvVSrtLg%3D 10.1007/978-1-60327-015-1-21
    • YL Lyubchenko LS Shlyakhtenko AA Gall 2009 Atomic force microscopy imaging and probing of DNA, proteins, and protein DNA complexes: silatrane surface chemistry Methods Mol Biol 543 337 351 19378175 1:CAS:528: DC%2BD1MXmvVSrtLg%3D 10.1007/978-1-60327-015-1-21
    • (2009) Methods Mol Biol , vol.543 , pp. 337-351
    • Lyubchenko, Y.L.1    Shlyakhtenko, L.S.2    Gall, A.A.3
  • 162
    • 0033052687 scopus 로고    scopus 로고
    • Atomic force microscopy imaging of DNA covalently immobilized on a functionalized mica substrate
    • 10388781 1:CAS:528:DyaK1MXkt1yrs7o%3D 10.1016/S0006-3495(99)76913-4
    • LS Shlyakhtenko AA Gall JJ Weimer DD Hawn YL Lyubchenko 1999 Atomic force microscopy imaging of DNA covalently immobilized on a functionalized mica substrate Biophys J 77 568 576 10388781 1:CAS:528:DyaK1MXkt1yrs7o%3D 10.1016/S0006-3495(99)76913-4
    • (1999) Biophys J , vol.77 , pp. 568-576
    • Shlyakhtenko, L.S.1    Gall, A.A.2    Weimer, J.J.3    Hawn, D.D.4    Lyubchenko, Y.L.5
  • 163
    • 0037096780 scopus 로고    scopus 로고
    • UV light-damaged DNA and its interaction with human replication protein A: An atomic force microscopy study
    • 12060686 1:CAS:528:DC%2BD38XltF2lsb8%3D 10.1093/nar/gkf378
    • M Lysetska A Knoll D Boehringer T Hey G Krauss G Krausch 2002 UV light-damaged DNA and its interaction with human replication protein A: an atomic force microscopy study Nucleic Acids Res 30 2686 2691 12060686 1:CAS:528:DC%2BD38XltF2lsb8%3D 10.1093/nar/gkf378
    • (2002) Nucleic Acids Res , vol.30 , pp. 2686-2691
    • Lysetska, M.1    Knoll, A.2    Boehringer, D.3    Hey, T.4    Krauss, G.5    Krausch, G.6
  • 164
    • 34047179944 scopus 로고    scopus 로고
    • Analysis of protein-DNA interactions using surface plasmon resonance
    • 17290817 1:CAS:528:DC%2BD2sXktFels7s%3D
    • J Majka C Speck 2007 Analysis of protein-DNA interactions using surface plasmon resonance Adv Biochem Eng Biotechnol 104 13 36 17290817 1:CAS:528:DC%2BD2sXktFels7s%3D
    • (2007) Adv Biochem Eng Biotechnol , vol.104 , pp. 13-36
    • Majka, J.1    Speck, C.2
  • 165
    • 34247533690 scopus 로고    scopus 로고
    • Biosensor-surface plasmon resonance: Quantitative analysis of small molecule-nucleic acid interactions
    • 17472897 1:CAS:528:DC%2BD2sXkslCntrs%3D 10.1016/j.ymeth.2006.09.009
    • B Nguyen FA Tanious WD Wilson 2007 Biosensor-surface plasmon resonance: quantitative analysis of small molecule-nucleic acid interactions Methods 42 150 161 17472897 1:CAS:528:DC%2BD2sXkslCntrs%3D 10.1016/j.ymeth.2006.09.009
    • (2007) Methods , vol.42 , pp. 150-161
    • Nguyen, B.1    Tanious, F.A.2    Wilson, W.D.3
  • 166
    • 0033536472 scopus 로고    scopus 로고
    • A multistep chemical modification procedure to create DNA arrays on gold surfaces for the study of protein-DNA interactions with surface plasmon resonance imaging
    • 1:CAS:528:DyaK1MXlt1Wisr4%3D 10.1021/ja991608e
    • JM Brockman AG Frutos RM Corn 1999 A multistep chemical modification procedure to create DNA arrays on gold surfaces for the study of protein-DNA interactions with surface plasmon resonance imaging J American Chem Soc 121 8044 8051 1:CAS:528:DyaK1MXlt1Wisr4%3D 10.1021/ja991608e
    • (1999) J American Chem Soc , vol.121 , pp. 8044-8051
    • Brockman, J.M.1    Frutos, A.G.2    Corn, R.M.3
  • 167
    • 0036364804 scopus 로고    scopus 로고
    • Differential scanning calorimetry
    • 11859754 1:CAS:528:DC%2BD38XhsVWns7o%3D
    • MM Lopez GI Makhatadze 2002 Differential scanning calorimetry Methods Mol Biol 173 113 119 11859754 1:CAS:528:DC%2BD38XhsVWns7o%3D
    • (2002) Methods Mol Biol , vol.173 , pp. 113-119
    • Lopez, M.M.1    Makhatadze, G.I.2
  • 168
    • 0035442411 scopus 로고    scopus 로고
    • Direct measurement of protein binding energetics by isothermal titration calorimetry
    • 11785756 1:CAS:528:DC%2BD3MXntlyis7k%3D 10.1016/S0959-440X(00)00248-7
    • S Leavitt E Freire 2001 Direct measurement of protein binding energetics by isothermal titration calorimetry Curr Opin Struct Biol 11 560 566 11785756 1:CAS:528:DC%2BD3MXntlyis7k%3D 10.1016/S0959-440X(00)00248-7
    • (2001) Curr Opin Struct Biol , vol.11 , pp. 560-566
    • Leavitt, S.1    Freire, E.2
  • 169
    • 33846527387 scopus 로고    scopus 로고
    • Survey of the year 2005: Literature on applications of isothermal titration calorimetry
    • 17006876 1:CAS:528:DC%2BD2sXhs1Wqsbw%3D 10.1002/jmr.803
    • A Ababou JE Ladbury 2007 Survey of the year 2005: literature on applications of isothermal titration calorimetry J Mol Recognit 20 4 14 17006876 1:CAS:528:DC%2BD2sXhs1Wqsbw%3D 10.1002/jmr.803
    • (2007) J Mol Recognit , vol.20 , pp. 4-14
    • Ababou, A.1    Ladbury, J.E.2
  • 170
    • 0032901515 scopus 로고    scopus 로고
    • Isothermal titration calorimetry and differential scanning calorimetry as complementary tools to investigate the energetics of biomolecular recognition
    • 10398392 1:CAS:528:DyaK1MXit1CjsrY%3D 10.1002/(SICI)1099-1352(199901/02) 12:1<3::AID-JMR441>3.0.CO;2-6
    • I Jelesarov HR Bosshard 1999 Isothermal titration calorimetry and differential scanning calorimetry as complementary tools to investigate the energetics of biomolecular recognition J Mol Recognit 12 3 18 10398392 1:CAS:528:DyaK1MXit1CjsrY%3D 10.1002/(SICI)1099-1352(199901/02)12:1<3::AID- JMR441>3.0.CO;2-6
    • (1999) J Mol Recognit , vol.12 , pp. 3-18
    • Jelesarov, I.1    Bosshard, H.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.