-
1
-
-
0029294716
-
From carpet bombing to cruise missiles: 'second-order' mechanisms of transcription factor-DNA binding in vivo
-
T. Kodadek From carpet bombing to cruise missiles: 'second-order' mechanisms of transcription factor-DNA binding in vivo Chem Biol 2 1995 267 279
-
(1995)
Chem Biol
, vol.2
, pp. 267-279
-
-
Kodadek, T.1
-
2
-
-
0035839136
-
Translating the histone code
-
T. Jenuwein, and C.D. Allis Translating the histone code Science 293 2001 1074 1080
-
(2001)
Science
, vol.293
, pp. 1074-1080
-
-
Jenuwein, T.1
Allis, C.D.2
-
3
-
-
0027982060
-
Two homeo domain proteins with similar specificity bind to a wide range of DNA sites in Drosophila embryos
-
J. Walter, C.A. Dever, and M.D. Biggin Two homeo domain proteins with similar specificity bind to a wide range of DNA sites in Drosophila embryos Genes Dev 8 1994 1678 1692
-
(1994)
Genes Dev
, vol.8
, pp. 1678-1692
-
-
Walter, J.1
Dever, C.A.2
Biggin, M.D.3
-
4
-
-
0025188837
-
Crystal structure of an engrailed homeodomain-DNA complex at 2.8 Å resolution: A framework for understanding homeodomain-DNA interactions
-
C.R. Kissinger, B. Liu, E. Martin-Blanco, T.B. Kornberg, and C.O. Pabo Crystal structure of an engrailed homeodomain-DNA complex at 2.8 Å resolution: a framework for understanding homeodomain-DNA interactions Cell 63 1990 579 590
-
(1990)
Cell
, vol.63
, pp. 579-590
-
-
Kissinger, C.R.1
Liu, B.2
Martin-Blanco, E.3
Kornberg, T.B.4
Pabo, C.O.5
-
5
-
-
0027331505
-
6 proteins distinguish between similar upstream activation sites? Comparison of the in vivo and in vitro DNA-binding specificities of the GAL4 protein
-
6 proteins distinguish between similar upstream activation sites? Comparison of the in vivo and in vitro DNA-binding specificities of the GAL4 protein J Biol Chem 268 1993 24699 24706
-
(1993)
J Biol Chem
, vol.268
, pp. 24699-24706
-
-
Vashee, S.1
Xu, H.2
Johnston, S.A.3
Kodadek, T.4
-
6
-
-
0028856072
-
The activation domain of GAL4 protein mediates cooperative promoter binding with general transcription factors in vivo
-
S. Vashee, and T. Kodadek The activation domain of GAL4 protein mediates cooperative promoter binding with general transcription factors in vivo Proc Natl Acad Sci USA 92 1995 10683 10687
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 10683-10687
-
-
Vashee, S.1
Kodadek, T.2
-
7
-
-
0035099393
-
Are all DNA binding and transcription regulation by an activator physiologically relevant?
-
Q. Li, and S.A. Johnston Are all DNA binding and transcription regulation by an activator physiologically relevant? Mol Cell Biol 21 2001 2467 2474
-
(2001)
Mol Cell Biol
, vol.21
, pp. 2467-2474
-
-
Li, Q.1
Johnston, S.A.2
-
8
-
-
0041668053
-
In vivo protein-protein and protein-DNA crosslinking for genomewide binding microarray
-
S.K. Kurdistani, and M. Grunstein In vivo protein-protein and protein-DNA crosslinking for genomewide binding microarray Methods 31 2003 90 95
-
(2003)
Methods
, vol.31
, pp. 90-95
-
-
Kurdistani, S.K.1
Grunstein, M.2
-
9
-
-
0036270889
-
ChIP-chip: A genomic approach for identifying transcription factor binding sites
-
C.E. Horak, and M. Snyder ChIP-chip: a genomic approach for identifying transcription factor binding sites Methods Enzymol 350 2002 469 483
-
(2002)
Methods Enzymol
, vol.350
, pp. 469-483
-
-
Horak, C.E.1
Snyder, M.2
-
10
-
-
0034704248
-
Genome-wide location and function of DNA-binding proteins
-
B. Ren, F. Robert, J.J. Wyrick, O. Aparicio, E.G. Jennings, I. Simon, J. Zeitlinger, J. Schreiber, N. Hannett, and E. Kanin Genome-wide location and function of DNA-binding proteins Science 290 2000 2306 2309
-
(2000)
Science
, vol.290
, pp. 2306-2309
-
-
Ren, B.1
Robert, F.2
Wyrick, J.J.3
Aparicio, O.4
Jennings, E.G.5
Simon, I.6
Zeitlinger, J.7
Schreiber, J.8
Hannett, N.9
Kanin, E.10
-
11
-
-
0035989659
-
Amine-modified random primers to label probes for DNA microarrays
-
C.C. Xiang, O.A. Kozhich, M. Chen, J.M. Inman, Q.N. Phan, Y. Chen, and M.J. Brownstein Amine-modified random primers to label probes for DNA microarrays Nat Biotechnol 20 2002 738 742
-
(2002)
Nat Biotechnol
, vol.20
, pp. 738-742
-
-
Xiang, C.C.1
Kozhich, O.A.2
Chen, M.3
Inman, J.M.4
Phan, Q.N.5
Chen, Y.6
Brownstein, M.J.7
-
12
-
-
84984932472
-
Observing the living genome
-
P.O. Brown, and D. Botsein Observing the living genome Nat Genet 21 1999 33 37
-
(1999)
Nat Genet
, vol.21
, pp. 33-37
-
-
Brown, P.O.1
Botsein, D.2
-
13
-
-
10244219858
-
Accessing genetic information with high-density DNA arrays
-
M. Chee, R. Yang, E. Hubbell, A. Berno, X.C. Huang, D. Stern, J. Winkler, D.J. Lockhart, M.S. Morris, and S.P. Fodor Accessing genetic information with high-density DNA arrays Science 274 1996 610 614
-
(1996)
Science
, vol.274
, pp. 610-614
-
-
Chee, M.1
Yang, R.2
Hubbell, E.3
Berno, A.4
Huang, X.C.5
Stern, D.6
Winkler, J.7
Lockhart, D.J.8
Morris, M.S.9
Fodor, S.P.10
-
14
-
-
0346670079
-
Comparing the use of Affymetrix to spotted oligonucleotide microarrays using two retinal pigment epithelium cell lines
-
A.T. Rogojina, W.E. Orr, B.K. Song, and E.E. Geisert Comparing the use of Affymetrix to spotted oligonucleotide microarrays using two retinal pigment epithelium cell lines Mol Vis 9 2003 482 496
-
(2003)
Mol Vis
, vol.9
, pp. 482-496
-
-
Rogojina, A.T.1
Orr, W.E.2
Song, B.K.3
Geisert, E.E.4
-
15
-
-
10744226888
-
Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs
-
S. Cawley, S. Bekiranov, H.H. Ng, P. Kapranov, E.A. Sekinger, D. Kampa, A. Piccolboni, V. Sementchenko, J. Cheng, and A.J. Williams Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs Cell 116 2004 499 509 The study reveals the functional attributes of non-coding DNA. The results suggest that transcripts from these non-coding regions could be regulated by transcription factor association and external stimuli.
-
(2004)
Cell
, vol.116
, pp. 499-509
-
-
Cawley, S.1
Bekiranov, S.2
Ng, H.H.3
Kapranov, P.4
Sekinger, E.A.5
Kampa, D.6
Piccolboni, A.7
Sementchenko, V.8
Cheng, J.9
Williams, A.J.10
-
16
-
-
0035945567
-
Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF
-
V. Iyer, C.E. Horak, C.S. Scafe, D. Botstein, M. Snyder, and P.O. Brown Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF Nature 409 2001 533 538
-
(2001)
Nature
, vol.409
, pp. 533-538
-
-
Iyer, V.1
Horak, C.E.2
Scafe, C.S.3
Botstein, D.4
Snyder, M.5
Brown, P.O.6
-
17
-
-
0036894656
-
Complex transcriptional circuitry at the G1/S transition in Saccharomyces cerevisiae
-
C.E. Horak, N.M. Luscombe, J. Qian, P. Bertone, S. Piccirrillo, M. Gerstein, and M. Snyder Complex transcriptional circuitry at the G1/S transition in Saccharomyces cerevisiae Genes Dev 16 2002 3017 3033
-
(2002)
Genes Dev
, vol.16
, pp. 3017-3033
-
-
Horak, C.E.1
Luscombe, N.M.2
Qian, J.3
Bertone, P.4
Piccirrillo, S.5
Gerstein, M.6
Snyder, M.7
-
18
-
-
0037123767
-
Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases
-
D. Robyr, Y. Suka, I. Xenarios, S.K. Kurdistani, A. Wang, N. Suka, and M. Grunstein Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases Cell 109 2002 437 446 By mapping histone hyperacetylation pattern in mutants defective in HDAC activity, the authors map the global sites recruiting for histone deacetylase.
-
(2002)
Cell
, vol.109
, pp. 437-446
-
-
Robyr, D.1
Suka, Y.2
Xenarios, I.3
Kurdistani, S.K.4
Wang, A.5
Suka, N.6
Grunstein, M.7
-
19
-
-
0033604609
-
Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast
-
J.J. Wyrick, F.C. Holstege, E.G. Jennings, H.C. Causton, D. Shore, M. Grunstein, E.S. Lander, and R.A. Young Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast Nature 402 1999 418 421
-
(1999)
Nature
, vol.402
, pp. 418-421
-
-
Wyrick, J.J.1
Holstege, F.C.2
Jennings, E.G.3
Causton, H.C.4
Shore, D.5
Grunstein, M.6
Lander, E.S.7
Young, R.A.8
-
20
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
T.I. Lee, N.J. Rinaldi, F. Robert, D.T. Odom, Z. Bar-Joseph, G.K. Gerber, N.M. Hannett, C.T. Harbison, C.M. Thompson, and I. Simon Transcriptional regulatory networks in Saccharomyces cerevisiae Science 298 2002 799 804 Using 106 tagged transcription factors, this team mapped all the promoters that recruit them. Their work suggest 4000-35 000 regulatory interactions between the various members of the gene network.
-
(2002)
Science
, vol.298
, pp. 799-804
-
-
Lee, T.I.1
Rinaldi, N.J.2
Robert, F.3
Odom, D.T.4
Bar-Joseph, Z.5
Gerber, G.K.6
Hannett, N.M.7
Harbison, C.T.8
Thompson, C.M.9
Simon, I.10
-
21
-
-
0035805255
-
Integrated genomic and proteomic analyses of a systematically perturbed metabolic network
-
T. Ideker, V. Thorsson, J.A. Ranish, R. Christmas, J. Buhler, J.K. Eng, R. Bumgarner, D.R. Goodlett, R. Aebersold, and L. Hood Integrated genomic and proteomic analyses of a systematically perturbed metabolic network Science 292 2001 929 934
-
(2001)
Science
, vol.292
, pp. 929-934
-
-
Ideker, T.1
Thorsson, V.2
Ranish, J.A.3
Christmas, R.4
Buhler, J.5
Eng, J.K.6
Bumgarner, R.7
Goodlett, D.R.8
Aebersold, R.9
Hood, L.10
-
22
-
-
0037022675
-
GATA-1 binding sites mapped in the beta-globin locus by using mammalian ChIp-chip analysis
-
C.E. Horak, M.C. Mahajan, N.M. Luscombe, M. Gerstein, S.M. Weissman, and M. Snyder GATA-1 binding sites mapped in the beta-globin locus by using mammalian ChIp-chip analysis Proc Natl Acad Sci USA 99 2002 2924 2929
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 2924-2929
-
-
Horak, C.E.1
Mahajan, M.C.2
Luscombe, N.M.3
Gerstein, M.4
Weissman, S.M.5
Snyder, M.6
-
23
-
-
0037435010
-
Identification of novel pRb binding sites using CpG microarrays suggests that E2F recruits pRb to specific genomic sites during S phase
-
J. Wells, P.S. Yan, M. Cechvala, T. Huang, and P.J. Farnham Identification of novel pRb binding sites using CpG microarrays suggests that E2F recruits pRb to specific genomic sites during S phase Oncogene 22 2003 1445 1460
-
(2003)
Oncogene
, vol.22
, pp. 1445-1460
-
-
Wells, J.1
Yan, P.S.2
Cechvala, M.3
Huang, T.4
Farnham, P.J.5
-
24
-
-
0037080674
-
Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis
-
A.S. Weinmann, P.S. Yan, M.J. Oberley, T.H. Huang, and P.J. Farnham Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis Genes Dev 16 2002 235 244
-
(2002)
Genes Dev
, vol.16
, pp. 235-244
-
-
Weinmann, A.S.1
Yan, P.S.2
Oberley, M.J.3
Huang, T.H.4
Farnham, P.J.5
-
25
-
-
0038492517
-
A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cells
-
Z. Li, S. Van Calcar, C. Qu, W.K. Cavenee, M.Q. Zhang, and B. Ren A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cells Proc Natl Acad Sci USA 100 2003 8164 8169
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 8164-8169
-
-
Li, Z.1
Van Calcar, S.2
Qu, C.3
Cavenee, W.K.4
Zhang, M.Q.5
Ren, B.6
-
26
-
-
10744227070
-
Control of pancreas and liver gene expression by HNF transcription factors
-
D.T. Odom, N. Zizlsperger, D.B. Gordon, G.W. Bell, N.J. Rinaldi, H.L. Murray, T.L. Volkert, J. Schreiber, P.A. Rolfe, and D.K. Gifford Control of pancreas and liver gene expression by HNF transcription factors Science 303 2004 1378 1381 The only available study done in higher eukaryotes aimed at identifying transcriptional regulatory networks. The authors generated association maps for HNF1α, HNF4α and HNF6 in hepatocytes and pancreatic islets and identified genes regulated by these transcription factors by probing the occupancy of RNA polymerase II.
-
(2004)
Science
, vol.303
, pp. 1378-1381
-
-
Odom, D.T.1
Zizlsperger, N.2
Gordon, D.B.3
Bell, G.W.4
Rinaldi, N.J.5
Murray, H.L.6
Volkert, T.L.7
Schreiber, J.8
Rolfe, P.A.9
Gifford, D.K.10
-
27
-
-
3042781030
-
Silencing of human polycomb target genes is associated with methylation of histone H3 Lys 27
-
A. Kirmizis, S.M. Bartley, A. Kuzmichev, R. Margueron, D. Reinberg, R. Green, and P.J. Farnham Silencing of human polycomb target genes is associated with methylation of histone H3 Lys 27 Genes Dev 18 2004 1592 1605
-
(2004)
Genes Dev
, vol.18
, pp. 1592-1605
-
-
Kirmizis, A.1
Bartley, S.M.2
Kuzmichev, A.3
Margueron, R.4
Reinberg, D.5
Green, R.6
Farnham, P.J.7
-
28
-
-
0027141519
-
Number of CpG islands and genes in human and mouse
-
F. Antequera, and A. Bird Number of CpG islands and genes in human and mouse Proc Natl Acad Sci USA 90 1993 11995 11999
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 11995-11999
-
-
Antequera, F.1
Bird, A.2
-
29
-
-
0037133707
-
The identification of E2F1-specific target genes
-
J. Wells, C.R. Graveel, S.M. Bartley, S.J. Madore, and P.J. Farnham The identification of E2F1-specific target genes Proc Natl Acad Sci USA 99 2002 3890 3895
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 3890-3895
-
-
Wells, J.1
Graveel, C.R.2
Bartley, S.M.3
Madore, S.J.4
Farnham, P.J.5
-
30
-
-
2442577021
-
Chromatin immunoprecipitation microarrays for identification of genes silenced by histone H3 lysine 9 methylation
-
Y. Kondo, L. Shen, P. Yan, T. Huang, and J.P. Issa Chromatin immunoprecipitation microarrays for identification of genes silenced by histone H3 lysine 9 methylation Proc Natl Acad Sci USA 101 2004 7398 7403
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 7398-7403
-
-
Kondo, Y.1
Shen, L.2
Yan, P.3
Huang, T.4
Issa, J.P.5
-
31
-
-
0142027777
-
Distribution of NF-kappaB-binding sites across human chromosome 22
-
R. Martone, G. Euskirchen, P. Bertone, S. Hartman, T.E. Royce, N.M. Luscombe, J.L. Rinn, F.K. Nelson, P. Miller, M. Gerstein, and S. Weissman Distribution of NF-kappaB-binding sites across human chromosome 22 Proc Natl Acad Sci USA 100 2003 12247 12252 The theme that emerged from this paper was that the binding sites of P65 were not restricted to promoters but prevalent in intronic and coding regions as well. This suggested that recruitment of the transcription factor alone is not sufficient for transcriptional activation. Another finding related to the broad sequence specificity of NF-κB as 50% of the mapped sites corresponded to non-consensus sites.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 12247-12252
-
-
Martone, R.1
Euskirchen, G.2
Bertone, P.3
Hartman, S.4
Royce, T.E.5
Luscombe, N.M.6
Rinn, J.L.7
Nelson, F.K.8
Miller, P.9
Gerstein, M.10
Weissman, S.11
-
32
-
-
2442503239
-
Novel ChIP-based strategies to uncover transcription factor target genes in the immune system
-
A.S. Weinmann Novel ChIP-based strategies to uncover transcription factor target genes in the immune system Nat Rev Immunol 4 2004 381 386
-
(2004)
Nat Rev Immunol
, vol.4
, pp. 381-386
-
-
Weinmann, A.S.1
-
33
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
E.S. Lander, L.M. Linton, B. Birren, C. Nusbaum, M.C. Zody, J. Baldwin, K. Devon, K. Dewar, M. Doyle, and W. FitzHugh Initial sequencing and analysis of the human genome Nature 409 2001 860 921
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
Fitzhugh, W.10
-
34
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
R.H. Waterston, K. Lindblad-Toh, E. Birney, J. Rogers, J.F. Abril, P. Agarwal, R. Agarwala, R. Ainscough, M. Alexandersson, and P. An Initial sequencing and comparative analysis of the mouse genome Nature 420 2002 520 562
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
Agarwal, P.6
Agarwala, R.7
Ainscough, R.8
Alexandersson, M.9
An, P.10
-
35
-
-
0027280998
-
Strong conservation of non-coding sequences during vertebrates evolution: Potential involvement in post-transcriptional regulation of gene expression
-
L. Duret, F. Dorkeld, and C. Gautier Strong conservation of non-coding sequences during vertebrates evolution: potential involvement in post-transcriptional regulation of gene expression Nucleic Acids Res 21 1993 2315 2322
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 2315-2322
-
-
Duret, L.1
Dorkeld, F.2
Gautier, C.3
-
36
-
-
0142104045
-
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
-
Y. Okazaki, M. Furuno, T. Kasukawa, J. Adachi, H. Bono, S. Kondo, I. Nikaido, N. Osato, R. Saito, and H. Suzuki Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs Nature 420 2002 563 573
-
(2002)
Nature
, vol.420
, pp. 563-573
-
-
Okazaki, Y.1
Furuno, M.2
Kasukawa, T.3
Adachi, J.4
Bono, H.5
Kondo, S.6
Nikaido, I.7
Osato, N.8
Saito, R.9
Suzuki, H.10
-
37
-
-
0038299558
-
Role of microRNAs in plant and animal development
-
J.C. Carrington, and V. Ambros Role of microRNAs in plant and animal development Science 301 2003 336 338
-
(2003)
Science
, vol.301
, pp. 336-338
-
-
Carrington, J.C.1
Ambros, V.2
-
38
-
-
0029975533
-
Identification of a novel transcript disrupted by a balanced translocation associated with DiGeorge syndrome
-
H.F. Sutherland, R. Wadey, J.M. McKie, C. Taylor, U. Atif, K.A. Johnstone, S. Halford, U.J. Kim, J. Goodship, and A. Baldini Identification of a novel transcript disrupted by a balanced translocation associated with DiGeorge syndrome Am J Hum Genet 59 1996 23 31
-
(1996)
Am J Hum Genet
, vol.59
, pp. 23-31
-
-
Sutherland, H.F.1
Wadey, R.2
McKie, J.M.3
Taylor, C.4
Atif, U.5
Johnstone, K.A.6
Halford, S.7
Kim, U.J.8
Goodship, J.9
Baldini, A.10
-
39
-
-
0033429470
-
DD3: A new prostate-specific gene, highly overexpressed in prostate cancer
-
M. Bussemakers, A. van Bokhoven, G. Verhaegh, F. Smit, H. Karthaus, J. Schalken, F. Debruyne, N. Ru, and W. Isaacs DD3: a new prostate-specific gene, highly overexpressed in prostate cancer Cancer Res 59 1999 5975 5979
-
(1999)
Cancer Res
, vol.59
, pp. 5975-5979
-
-
Bussemakers, M.1
Van Bokhoven, A.2
Verhaegh, G.3
Smit, F.4
Karthaus, H.5
Schalken, J.6
Debruyne, F.7
Ru, N.8
Isaacs, W.9
-
40
-
-
0035364954
-
B-cell neoplasia associated gene with multiple splicing (BCMS): The candidate B-CLL gene on 13q14 comprises more than 560 kb covering all critical regions
-
S. Wolf, D. Mertens, C. Schaffner, C. Korz, H. Dohner, S. Stilgenbauer, and P. Lichter B-cell neoplasia associated gene with multiple splicing (BCMS): the candidate B-CLL gene on 13q14 comprises more than 560 kb covering all critical regions Hum Mol Genet 10 2001 1275 1285
-
(2001)
Hum Mol Genet
, vol.10
, pp. 1275-1285
-
-
Wolf, S.1
Mertens, D.2
Schaffner, C.3
Korz, C.4
Dohner, H.5
Stilgenbauer, S.6
Lichter, P.7
-
41
-
-
0035960043
-
The RNA component of telomerase is mutated in autosomal dominant dyskeratosis congenita
-
T. Vulliamy, A. Marrone, F. Goldman, A. Dearlove, M. Bessler, P.J. Mason, and I. Dokal The RNA component of telomerase is mutated in autosomal dominant dyskeratosis congenita Nature 413 2001 432 435
-
(2001)
Nature
, vol.413
, pp. 432-435
-
-
Vulliamy, T.1
Marrone, A.2
Goldman, F.3
Dearlove, A.4
Bessler, M.5
Mason, P.J.6
Dokal, I.7
-
42
-
-
0037172993
-
Methylation of histone H3 Lys 4 in coding regions of active genes
-
B.E. Bernstein, E.L. Humphrey, R.L. Erlich, R. Schneider, P. Bouman, J.S. Liu, T. Kouzarides, and S.L. Schreiber Methylation of histone H3 Lys 4 in coding regions of active genes Proc Natl Acad Sci USA 99 2002 8695 8700
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 8695-8700
-
-
Bernstein, B.E.1
Humphrey, E.L.2
Erlich, R.L.3
Schneider, R.4
Bouman, P.5
Liu, J.S.6
Kouzarides, T.7
Schreiber, S.L.8
-
43
-
-
0032076121
-
Yeast heterochromatin: Regulation of its assembly and inheritance by histones
-
M. Grunstein Yeast heterochromatin: regulation of its assembly and inheritance by histones Cell 93 1998 325 328
-
(1998)
Cell
, vol.93
, pp. 325-328
-
-
Grunstein, M.1
-
45
-
-
0032076048
-
RNA and the epigenetic regulation of X chromosome inactivation
-
B. Panning, and R. Jaenisch RNA and the epigenetic regulation of X chromosome inactivation Cell 93 1998 305 308
-
(1998)
Cell
, vol.93
, pp. 305-308
-
-
Panning, B.1
Jaenisch, R.2
-
46
-
-
0030743612
-
DNA methylation and imprinting: Why bother?
-
R. Jaenisch DNA methylation and imprinting: why bother? Trends Genet 13 1997 323 329
-
(1997)
Trends Genet
, vol.13
, pp. 323-329
-
-
Jaenisch, R.1
-
48
-
-
0035105035
-
TUP1 utilizes histone H3/H2B-specific HDA1 deacetylase to repress gene activity in yeast
-
J. Wu, N. Suka, M. Carlson, and M. Grunstein TUP1 utilizes histone H3/H2B-specific HDA1 deacetylase to repress gene activity in yeast Mol Cell 2001 117 126
-
(2001)
Mol Cell
, pp. 117-126
-
-
Wu, J.1
Suka, N.2
Carlson, M.3
Grunstein, M.4
-
49
-
-
2642570305
-
The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote
-
D. Schubeler, D.M. MacAlpine, D. Scalzo, C. Wirbelauer, C. Kooperberg, F. van Leeuwen, D.E. Gottschling, L.P. O'Neill, B.M. Turner, and J. Delrow The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote Genes Dev 18 2004 1263 1271 This study shows that hyperacetylation of H3 and H4 and hypermethylation of H3 are modifications that are associated with transcriptional activity of the genes.
-
(2004)
Genes Dev
, vol.18
, pp. 1263-1271
-
-
Schubeler, D.1
MacAlpine, D.M.2
Scalzo, D.3
Wirbelauer, C.4
Kooperberg, C.5
Van Leeuwen, F.6
Gottschling, D.E.7
O'Neill, L.P.8
Turner, B.M.9
Delrow, J.10
-
50
-
-
3543008920
-
High-resolution genome-wide mapping of histone modifications
-
Roh T-y, W.C. Ngau, K. Cui, D. Landsman, and K. Zhao High-resolution genome-wide mapping of histone modifications Nat Biotechnol 22 2004 1013 1016
-
(2004)
Nat Biotechnol
, vol.22
, pp. 1013-1016
-
-
Roh, T.-Y.1
Ngau, W.C.2
Cui, K.3
Landsman, D.4
Zhao, K.5
-
51
-
-
0032846163
-
Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array
-
S. Singh-Gasson, R.D. Green, Y. Yue, C. Nelson, F. Blattner, M.R. Sussman, and F. Cerrina Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array Nat Biotechnol 17 1999 974 978
-
(1999)
Nat Biotechnol
, vol.17
, pp. 974-978
-
-
Singh-Gasson, S.1
Green, R.D.2
Yue, Y.3
Nelson, C.4
Blattner, F.5
Sussman, M.R.6
Cerrina, F.7
-
53
-
-
0041859398
-
High-level generation of polyclonal antibodies by genetic immunization
-
R.S. Chambers, and S.A. Johnston High-level generation of polyclonal antibodies by genetic immunization Nat Biotechnol 21 2003 1088 1092
-
(2003)
Nat Biotechnol
, vol.21
, pp. 1088-1092
-
-
Chambers, R.S.1
Johnston, S.A.2
-
54
-
-
0026317851
-
Laser cross-linking of protein-nucleic acid complexes
-
J.W. Hockensmith, W.L. Kubasek, W.R. Vorachek, E.M. Evertsz, and P.H. von Hippel Laser cross-linking of protein-nucleic acid complexes Methods Enzymol 208 1991 211 236
-
(1991)
Methods Enzymol
, vol.208
, pp. 211-236
-
-
Hockensmith, J.W.1
Kubasek, W.L.2
Vorachek, W.R.3
Evertsz, E.M.4
Von Hippel, P.H.5
-
55
-
-
0037722938
-
Program-specific distribution of a transcription factor dependent on partner transcription factor and MAPK signaling
-
J. Zeitlinger, I. Simon, C.T. Harbison, N.M. Hannett, T.L. Volkert, G.R. Fink, and R.A. Young Program-specific distribution of a transcription factor dependent on partner transcription factor and MAPK signaling Cell 113 2003 395 404
-
(2003)
Cell
, vol.113
, pp. 395-404
-
-
Zeitlinger, J.1
Simon, I.2
Harbison, C.T.3
Hannett, N.M.4
Volkert, T.L.5
Fink, G.R.6
Young, R.A.7
-
56
-
-
2442606759
-
Genome-wide occupancy profile of the RNA polymerase III machinery in Saccharomyces cerevisiae reveals loci with incomplete transcription complexes
-
Z. Moqtaderi, and K. Struhl Genome-wide occupancy profile of the RNA polymerase III machinery in Saccharomyces cerevisiae reveals loci with incomplete transcription complexes Mol Cell Biol 24 2004 4118 4127
-
(2004)
Mol Cell Biol
, vol.24
, pp. 4118-4127
-
-
Moqtaderi, Z.1
Struhl, K.2
-
57
-
-
11144357294
-
CREB binds to multiple loci on human chromosome 22
-
G. Euskirchen, T.E. Royce, P. Bertone, R. Martone, J.L. Rinn, F.K. Nelson, F. Sayward, N.M. Luscombe, P. Miller, M. Gerstein, and S. Weissman CREB binds to multiple loci on human chromosome 22 Mol Cell Biol 24 2004 3804 3814
-
(2004)
Mol Cell Biol
, vol.24
, pp. 3804-3814
-
-
Euskirchen, G.1
Royce, T.E.2
Bertone, P.3
Martone, R.4
Rinn, J.L.5
Nelson, F.K.6
Sayward, F.7
Luscombe, N.M.8
Miller, P.9
Gerstein, M.10
Weissman, S.11
-
58
-
-
0037080483
-
E2F integrates cell cycle progression with DNA repair, replication, and G(2)/M checkpoints
-
B. Ren, H. Cam, Y. Takahashi, T. Volkert, J. Terragni, R.A. Young, and B.D. Dynlacht E2F integrates cell cycle progression with DNA repair, replication, and G(2)/M checkpoints Genes Dev 16 2002 245 256
-
(2002)
Genes Dev
, vol.16
, pp. 245-256
-
-
Ren, B.1
Cam, H.2
Takahashi, Y.3
Volkert, T.4
Terragni, J.5
Young, R.A.6
Dynlacht, B.D.7
-
59
-
-
10744227070
-
Control of pancreas and liver gene expression by HNF transcription factors
-
D.T. Odom, N. Zizlsperger, D.B. Gordon, G.W. Bell, N.J. Rinaldi, H.L. Murray, T.L. Volkert, J. Schreiber, P.A. Rolfe, D.K. Gifford, and E. Fraenkel Control of pancreas and liver gene expression by HNF transcription factors Science 303 2004 1378 1381
-
(2004)
Science
, vol.303
, pp. 1378-1381
-
-
Odom, D.T.1
Zizlsperger, N.2
Gordon, D.B.3
Bell, G.W.4
Rinaldi, N.J.5
Murray, H.L.6
Volkert, T.L.7
Schreiber, J.8
Rolfe, P.A.9
Gifford, D.K.10
Fraenkel, E.11
-
60
-
-
0036205048
-
Genome-wide location and regulated recruitment of the RSC nucleosome-remodeling complex
-
H.H. Ng, F. Robert, R.A. Young, and K. Struhl Genome-wide location and regulated recruitment of the RSC nucleosome-remodeling complex Genes Dev 16 2002 806 819
-
(2002)
Genes Dev
, vol.16
, pp. 806-819
-
-
Ng, H.H.1
Robert, F.2
Young, R.A.3
Struhl, K.4
-
61
-
-
0035861492
-
Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: High-resolution mapping of replication origins
-
J.J. Wyrick, J.G. Aparicio, T. Chen, J.D. Barnett, E.G. Jennings, R.A. Young, S.P. Bell, and O.M. Aparicio Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins Science 294 2001 2357 2360
-
(2001)
Science
, vol.294
, pp. 2357-2360
-
-
Wyrick, J.J.1
Aparicio, J.G.2
Chen, T.3
Barnett, J.D.4
Jennings, E.G.5
Young, R.A.6
Bell, S.P.7
Aparicio, O.M.8
-
62
-
-
0042669957
-
Genomewide histone acetylation microarrays
-
D. Robyr, and M. Grunstein Genomewide histone acetylation microarrays Methods 31 2003 83 89
-
(2003)
Methods
, vol.31
, pp. 83-89
-
-
Robyr, D.1
Grunstein, M.2
-
63
-
-
0037172993
-
Methylation of histone H3 Lys 4 in coding regions of active genes
-
B.E. Bernstein, E.L. Humphrey, R.L. Erlich, R. Schneider, P. Bouman, J.S. Liu, T. Kouzarides, and S.L. Schreiber Methylation of histone H3 Lys 4 in coding regions of active genes Proc Natl Acad Sci USA 99 2002 8695 8700
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 8695-8700
-
-
Bernstein, B.E.1
Humphrey, E.L.2
Erlich, R.L.3
Schneider, R.4
Bouman, P.5
Liu, J.S.6
Kouzarides, T.7
Schreiber, S.L.8
-
64
-
-
2642570305
-
The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote
-
D. Schubeler, D.M. MacAlpine, D. Scalzo, C. Wirbelauer, C. Kooperberg, F. van Leeuwen, D.E. Gottschling, L.P. O'Neill, B.M. Turner, J. Delrow, and S.P. Bell The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote Genes Dev 18 2004 1263 1271
-
(2004)
Genes Dev
, vol.18
, pp. 1263-1271
-
-
Schubeler, D.1
MacAlpine, D.M.2
Scalzo, D.3
Wirbelauer, C.4
Kooperberg, C.5
Van Leeuwen, F.6
Gottschling, D.E.7
O'Neill, L.P.8
Turner, B.M.9
Delrow, J.10
Bell, S.P.11
-
65
-
-
0034934774
-
Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association
-
J.D. Lieb, X. Liu, D. Botstein, and P.O. Brown Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association Nat Genet 28 2001 327 334
-
(2001)
Nat Genet
, vol.28
, pp. 327-334
-
-
Lieb, J.D.1
Liu, X.2
Botstein, D.3
Brown, P.O.4
-
66
-
-
2942598422
-
Genome-wide analysis of the biology of stress responses through heat shock transcription factor
-
J.S. Hahn, Z. Hu, D.J. Thiele, and V.R. Iyer Genome-wide analysis of the biology of stress responses through heat shock transcription factor Mol Cell Biol 24 2004 5249 5256
-
(2004)
Mol Cell Biol
, vol.24
, pp. 5249-5256
-
-
Hahn, J.S.1
Hu, Z.2
Thiele, D.J.3
Iyer, V.R.4
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