Identification of the DNA binding surface of H-NS protein from Escherichia coli by heteronuclear NMR spectroscopy

FEBS Letters

Volumn 455, Issue 1-2, 1999, Pages 63-69

  Shindo, Heisaburo ^a   Ohnuki, Ayumi ^a   Ginba, Hiroyuki ^a   Katoh, Etsuko ^b   Ueguchi, Chiharu ^c   Mizuno, Takeshi ^c   Yamazaki, Toshimasa ^b  

^a TOKYO UNIVERSITY OF PHARMACY AND LIFE SCIENCES   (Japan)

^b NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^c NAGOYA UNIVERSITY   (Japan)

Author keywords

Deletion mutant; DNA binding domain; Gel retardation assay; H NS; Nuclear magnetic resonance; Nucleoid associated protein

Indexed keywords

DNA BINDING PROTEIN;

ARTICLE; BINDING SITE; DELETION MUTANT; DNA BINDING; ESCHERICHIA COLI; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; NUCLEAR OVERHAUSER EFFECT; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN PROTEIN INTERACTION; PROTEIN SECONDARY STRUCTURE;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; BASE SEQUENCE; BINDING SITES; DNA; DNA-BINDING PROTEINS; ESCHERICHIA COLI; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, SECONDARY;

EID: 0033027096     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0014-5793(99)00862-5     Document Type: Article

References (29)

1. Drilica K., Rouviere-Yaniv J. Microbiol. Rev. 51:1987;301-319.
2. Ueguchi C., Mizuno T. EMBO J. 12:1993;1039-1046.
3. Hayat M.A., Mancarella D.A. Micron. 26:1995;461-480.
4. Dorman C.J. Microbiology. 141:1995;1271-1280.
5. Atlung T., Ingmer H. Mol. Microbiol. 24:1997;7-17.
6. Pon C.L., Calogero R.A., Gualerzi C.O. Mol. Gen. Genet. 212:1988;199-202.
7. Bracco L., Kotlarz D., Kolb A., Dielmann S., Buc H. EMBO J. 8:1989;4289-4296.
8. Yamada H., Muramatsu S., Mizuno T. J. Biochem. (Tokyo). 108:1990;420-425.
9. Owen-Hughes T.A., Pavitt G.D., Santos D.S., Sidebotham J.M., Hulton C.S.J., Hinton J.C.D., Higgins C.F. Cell. 71:1992;255-265.
10. Zuber F., Kotlarz S., Rimsky S., Buc H. Mol. Microbiol. 12:1994;231-240.
11. Lucht J.M., Dersch P., Kempf B., Bremer E. J. Biol. Chem. 269:1994;6578-6586.
12. Williams R.M., Rimsky S., Buc H. J. Bacteriol. 178:1996;4335-4343.
13. Spurio R., Falconi M., Brandi A., Pon C.L., Gualerzi C.O. EMBO J. 16:1997;1795-1805.
14. Ueguchi C., Suzuki T., Yoshida T., Tanaka K., Mizuno T. J. Mol. Biol. 263:1996;149-162.
15. Ueguchi C., Seto C., Suzuki T., Mizuno T. J. Mol. Biol. 274:1997;145-151.
16. Shindo H., Iwaki T., Ieda R., Kurumizaka H., Ueguchi C., Mizuno T., Morikawa S., Nakamura H., Kuboniwa H. FEBS Lett. 36:1995;125-131.
17. Tanaka K.-I., Yamada T., Yoshida T., Mizuno T. Agric. Biol. Chem. 55:1991;3139-3141.
18. Tabor, S. (1989) in: Current Protocols in Molecular Biology (Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A. and Struhl, K. Eds.), pp. 16.2.1-16.2.11, John Wiley and Son, New York.
19. Shimizu M., Miyake M., Kanke F., Matsumoto U., Shindo H. Biochim. Biophys. Acta. 1264:1995;330-336.
20. Szyperski T., Pellecchia M., Wuethrich K. J. Magn. Reson. 105:1994;188-191.
21. Grzesiek S., Bax A. J. Magn. Reson. 99:1992;201-207.
22. Fesik S.W., Zuiderweg E.R.P. J. Magn. Reson. 78:1988;588-593.
23. Spera S., Bax A. J. Am. Chem. Soc. 113:1991;5490-5492.
24. Wishart D.S., Sykes B.D., Richards F.M. J. Mol. Biol. 222:1991;311-333.
25. Fairbrother W.J., Palmer A.G., Rance M., Reizer J., Saier M.H. Jr., Wright P.E. Biochemistry. 31:1992;4413-4425.
26. Otting G., Qian Y.Q., Billeter M., Müller M., Attolter M., Gehring W.J., Wüthrrich K. EMBO J. 9:1990;3085-3092.
27. Gölach M., Mittekind M., Beckman R.A., Muller L., Dreyfuss G. EMBO J. 11:1992;3289-3295.
28. Chen Y., Reizer J., Saier M.H. Jr., Fairbrother W.J., Wright P.E. Biochemistry. 32:1993;32-37.
29. Emerson S.D., Madison V.S., Palermo R.E., Waugh D.S., Scheffler J.E., Tsao K.-L., Keifer S.E., Liu S.P., Fry D.C. Biochemistry. 34:1995;6911-6918.