An integrated software system for analyzing ChIP-chip and ChIP-seq data

Nature Biotechnology

Volumn 26, Issue 11, 2008, Pages 1293-1300

  Ji, Hongkai ^a   Jiang, Hui ^b   Ma, Wenxiu ^b   Johnson, David S ^c,f   Myers, Richard M ^d   Wong, Wing H ^e  

^a JOHNS HOPKINS BLOOMBERG SCHOOL OF PUBLIC HEALTH   (United States)

^b Stanford University   (United States)

^c STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^d HUDSONALPHA INSTITUTE FOR BIOTECHNOLOGY   (United States)

^e STANFORD UNIVERSITY   (United States)

^f Gene Security Network Inc   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOASSAY; BIOCHIPS; COMPUTER SOFTWARE; DATA VISUALIZATION; DECISION SUPPORT SYSTEMS; INFORMATION MANAGEMENT; NUCLEIC ACIDS; ORGANIC ACIDS; STATISTICAL METHODS; TRANSCRIPTION; TRANSCRIPTION FACTORS; VISUALIZATION;

ANALYSIS METHODS; ARRAY IMAGES; CHROMATIN IMMUNOPRECIPITATION; COMPARATIVE ANALYSIS; DATA ANALYSIS; DATA NORMALIZATIONS; FALSE DISCOVERY RATES; GENE STRUCTURES; GRAPHIC USER INTERFACES; INTEGRATED SOFTWARE SYSTEMS; INTERACTIVE ANALYSES; MASSIVELY PARALLEL SEQUENCING; MODULAR DESIGNS; MOTIF ANALYSIS; NEGATIVE CONTROLS; PEAK DETECTIONS; SOFTWARE SYSTEMS; WITH OR WITHOUT;

MICROARRAYS;

ARTICLE; CHROMATIN IMMUNOPRECIPITATION; CISGENOME; COMPUTER PROGRAM; DATA ANALYSIS SOFTWARE; GENE SEQUENCE; INFORMATION PROCESSING; MICROARRAY ANALYSIS; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL;

ANIMALS; CHROMATIN IMMUNOPRECIPITATION; COMPUTATIONAL BIOLOGY; COMPUTER GRAPHICS; GENOME; HUMANS; MICE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REPRESSOR PROTEINS; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS, DNA; SOFTWARE; TRANSCRIPTION FACTORS; USER-COMPUTER INTERFACE;

EID: 55749094855     PISSN: 10870156     EISSN: 15461696     Source Type: Journal    
DOI: 10.1038/nbt.1505     Document Type: Article

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