Alternative macroautophagic pathways

International Journal of Cell Biology

Volumn , Issue , 2012, Pages

  Juenemann, Katrin ^a   Reits, Eric A ^a  

^a ACADEMIC MEDICAL CENTER   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

AUTOPHAGY PROTEIN 5; BECLIN 1; MEMBRANE PROTEIN; PHOSPHATIDYLINOSITOL 3 KINASE; PROTEIN ATG7; PROTEIN FIP200; PROTEIN LC3; PROTEIN ULK1; PROTEIN ULK2; UNCLASSIFIED DRUG;

AUTOPHAGOSOME; AUTOPHAGY; CELL ORGANELLE; CLEARANCE; HUMAN; LYSOSOME; MACROAUTOPHAGY; MEMBRANE STRUCTURE; NONHUMAN; PRIORITY JOURNAL; PROTEIN AGGREGATION; REVIEW;

EID: 84859763961     PISSN: 16878876     EISSN: 16878884     Source Type: Journal    
DOI: 10.1155/2012/189794     Document Type: Review

References (79)

1. Ravikumar B., Sarkar S., Davies J. E., Futter M., Garcia-Arencibia M., Green-Thompson Z. W., Jimenez-Sanchez M., Korolchuk V. I., Lichtenberg M., Luo S., Massey D. C. O., Menzies F. M., Moreau K., Narayanan U., Renna M., Siddiqi F. H., Underwood B. R., Winslow And A. R., Rubinsztein D. C., Regulation of mammalian autophagy in physiology and pathophysiology Physiological Reviews 2010 90 4 1383 1435
2. Mortimore G. E., Hutson N. J., Surmacz C. A., Quantitative correlation between proteolysis and macro- and microautophagy in mouse hepatocytes during starvation and refeeding Proceedings of the National Academy of Sciences of the United States of America 1983 80 8 2179 2183 (Pubitemid 13097159)
3. De Waal E. J., Vreeling-Sindelarova H., Schellens J. P. M., Quantitative changes in the lysosomal vacuolar system of rat hepatocytes during short-term starvation. A morphometric analysis with special reference to macro- and microautophagy Cell and Tissue Research 1986 243 3 641 648 (Pubitemid 16160687)
4. Mller O., Sattler T., Fltenmeyer M., Schwarz H., Plattner H., Mayer A., Autophagic tubes: vacuolar invaginations involved in lateral membrane sorting and inverse vesicle budding Journal of Cell Biology 2000 151 3 519 528
5. Sattler T., Mayer A., Cell-free reconstitution of microautophagic vacuole invagination and vesicle formation Journal of Cell Biology 2000 151 3 529 538
6. Dice J. F., Chiang H. L., Spencer E. P., Backer J. M., Regulation of catabolism of microinjected ribonuclease A. Identification of residues 711 as the essential pentapeptide Journal of Biological Chemistry 1986 261 15 6853 6859 (Pubitemid 17219453)
7. Dice J. F., Molecular determinants of protein half-lives in eukaryotic cells The FASEB Journal 1987 1 5 349 357 (Pubitemid 18033755)
8. Cuervo A. M., Dice J. F., A receptor for the selective uptake and degradation of proteins by lysosomes Science 1996 273 5274 501 503 (Pubitemid 26286451)
9. Agarraberes F. A., Terlecky S. R., Dice J. F., An intralysosomal hsp70 is required for a selective pathway of lysosomal protein degradation Journal of Cell Biology 1997 137 4 825 834 (Pubitemid 27215505)
10. Seglen P. O., Gordon P. B., Holen I., Non-selective autophagy Seminars in Cell Biology 1990 1 6 441 448
11. Xie Z., Klionsky D. J., Autophagosome formation: core machinery and adaptations Nature Cell Biology 2007 9 10 1102 1109 (Pubitemid 47500484)
12. Mizushima N., Levine B., Autophagy in mammalian development and differentiation Nature Cell Biology 2010 12 9 823 830
13. Levine B., Klionsky D. J., Development by self-digestion: molecular mechanisms and biological functions of autophagy Developmental Cell 2004 6 4 463 477 (Pubitemid 38456176)
14. Axe E. L., Walker S. A., Manifava M., Chandra P., Roderick H. L., Habermann A., Griffiths G., Ktistakis N. T., Autophagosome formation from membrane compartments enriched in phosphatidylinositol 3-phosphate and dynamically connected to the endoplasmic reticulum Journal of Cell Biology 2008 182 4 685 701
15. Juhasz G., Neufeld T. P., Autophagy: a forty-year search for a missing membrane source Plos Biology 2006 4 2, article e36
16. Yoshimori T., Noda T., Toward unraveling membrane biogenesis in mammalian autophagy Current Opinion in Cell Biology 2008 20 4 401 407
17. Reggiori F., Membrane origin for autophagy Current Topics in Developmental Biology 2006 74 1 30 (Pubitemid 44062702)
18. Klionsky D. J., Cregg J. M., Dunn W. A., Emr S. D., Sakai Y., Sandoval I. V., Sibirny A., Subramani S., Thumm M., Veenhuis M., Ohsumi Y., A unified nomenclature for yeast autophagy-related genes Developmental Cell 2003 5 4 539 545 (Pubitemid 37243044)
19. Hendil K. B., Lauridsen A. M., Seglen P. O., Both endocytic and endogenous protein degradation in fibroblasts is stimulated by serum/amino acid deprivation and inhibited by 3-methyladenine Biochemical Journal 1990 272 3 577 581
20. Seglen P. O., Gordon P. B., 3-Methyladenine: specific inhibitor of autophagic/lysosomal protein degradation in isolated rat hepatocytes Proceedings of the National Academy of Sciences of the United States of America 1982 79 6 1889 1892 (Pubitemid 12088533)
21. Wu Y. T., Tan H. L., Shui G., Bauvy C., Huang Q., Wenk M. R., Ong C. N., Codogno P., Shen H. M., Dual role of 3-methyladenine in modulation of autophagy via different temporal patterns of inhibition on class I and III phosphoinositide 3-kinase Journal of Biological Chemistry 2010 285 14 10850 10861
22. Blommaart E. F., Krause U., Schellens J. P. M., Vreeling-Sindelrov H., Meijer A. J., The phosphatidylinositol 3-kinase inhibitors wortmannin and LY294002 inhibit in isolated rat hepatocytes European Journal of Biochemistry 1997 243 1-2 240 246 (Pubitemid 27060408)
23. Ohsumi Y., Mizushima N., Two ubiquitin-like conjugation systems essential for autophagy Seminars in Cell and Developmental Biology 2004 15 2 231 236 (Pubitemid 38251652)
24. Tanida I., Sou Y. S., Ezaki J., Minematsu-Ikeguchi N., Ueno T., Kominami E., HsAtg4B/HsApg4B/autophagin-1 cleaves the carboxyl termini of three human Atg8 homologues and delipidates microtubule-associated protein light chain 3- and GABAA receptor-associated protein-phospholipid conjugates Journal of Biological Chemistry 2004 279 35 36268 36276 (Pubitemid 39128963)
25. Hanada T., Noda N. N., Satomi Y., Ichimura Y., Fujioka Y., Takao T., Inagaki F., Ohsumi Y., The Atg12-Atg5 conjugate has a novel E3-like activity for protein lipidation in autophagy Journal of Biological Chemistry 2007 282 52 37298 37302
26. Satoo K., Noda N. N., Kumeta H., Fujioka Y., Mizushima N., Ohsumi Y., Inagaki F., The structure of Atg4B-LC3 complex reveals the mechanism of LC3 processing and delipidation during autophagy The EMBO Journal 2009 28 9 1341 1350
27. Schweers R. L., Zhang J., Randall M. S., Loyd M. R., Li W., Dorsey F. C., Kundu M., Opferman J. T., Cleveland J. L., Miller J. L., Ney P. A., NIX is required for programmed mitochondrial clearance during reticulocyte maturation Proceedings of the National Academy of Sciences of the United States of America 2007 104 49 19500 19505
28. Schwarten M., Mohrlder J., Ma P., Stoldt M., Thielmann Y., Stangler T., Hersch N., Hoffmann B., Merkel R., Willbold D., Nix directly binds to GABARAP: a possible crosstalk between apoptosis and autophagy Autophagy 2009 5 5 690 698
29. Novak I., Dikic I., Autophagy receptors in developmental clearance of mitochondria Autophagy 2011 7 3 301 303
30. Novak I., Kirkin V., McEwan D. G., Zhang J., Wild P., Rozenknop A., Rogov V., Lhr F., Popovic D., Occhipinti A., Reichert A. S., Terzic J., Dtsch V., Ney P. A., Dikic I., Nix is a selective autophagy receptor for mitochondrial clearance EMBO Reports 2010 11 1 45 51
31. Kundu M., Lindsten T., Yang C. Y., Wu J., Zhao F., Zhang J., Selak M. A., Ney P. A., Thompson C. B., Ulk1 plays a critical role in the autophagic clearance of mitochondria and ribosomes during reticulocyte maturation Blood 2008 112 4 1493 1502
32. Aerbajinai W., Giattina M., Lee Y. T., Raffeld M., Miller J. L., The proapoptotic factor Nix is coexpressed with Bcl-xL during terminal erythroid differentiation Blood 2003 102 2 712 717 (Pubitemid 36841996)
33. Diwan A., Koesters A. G., Odley A. M., Pushkaran S., Baines C. P., Spike B. T., Daria D., Jegga A. G., Geiger H., Aronow B. J., Molkentin J. D., Macleod K. F., Kalfa T. A., Dorn G. W., Unrestrained erythroblast development in Nix-/- mice reveals a mechanism for apoptotic modulation of erythropoiesis Proceedings of the National Academy of Sciences of the United States of America 2007 104 16 6794 6799 (Pubitemid 47175580)
34. Sandoval H., Thiagarajan P., Dasgupta S. K., Schumacher A., Prchal J. T., Chen M., Wang J., Essential role for Nix in autophagic maturation of erythroid cells Nature 2008 454 7201 232 235 (Pubitemid 351969889)
35. Mauvezin C., Orpinell M., Francis V. A., Mansilla F., Duran J., Ribas V., Palacn M., Boya P., Teleman A. A., Zorzano A., The nuclear cofactor DOR regulates autophagy in mammalian and Drosophila cells EMBO Reports 2010 11 1 37 44
36. Pandey U. B., Nie Z., Batlevi Y., McCray B. A., Ritson G. P., Nedelsky N. B., Schwartz S. L., Diprospero N. A., Knight M. A., Schuldiner O., Padmanabhan R., Hild M., Berry D. L., Garza D., Hubbert C. C., Yao T. P., Baehrecke E. H., Taylor J. P., HDAC6 rescues neurodegeneration and provides an essential link between autophagy and the UPS Nature 2007 447 7146 859 863 (Pubitemid 46920134)
37. Ding W. X., Ni H. M., Gao W., Yoshimori T., Stolz D. B., Ron D., Yin X. M., Linking of autophagy to ubiquitin-proteasome system is important for the regulation of endoplasmic reticulum stress and cell viability American Journal of Pathology 2007 171 2 513 524 (Pubitemid 47344684)
38. Iwata A., Riley B. E., Johnston J. A., Kopito R. R., HDAC6 and microtubules are required for autophagic degradation of aggregated huntingtin Journal of Biological Chemistry 2005 280 48 40282 40292 (Pubitemid 41779165)
39. Du Y., Yang D., Li L., Luo G., Li T., Fan X., Wang Q., Zhang X., Wang Y., Le W., An insight into the mechanistic role of p53-mediated autophagy induction in response to proteasomal inhibition-induced neurotoxicity Autophagy 2009 5 5 663 675
40. Korolchuk V. I., Menzies F. M., Rubinsztein D. C., A novel link between autophagy and the ubiquitin-proteasome system Autophagy 2009 5 6 862 863
41. Korolchuk V. I., Mansilla A., Menzies F. M., Rubinsztein D. C., Autophagy inhibition compromises degradation of ubiquitin-proteasome pathway substrates Molecular Cell 2009 33 4 517 527
42. Raspe M., Gillis J., Krol H., Krom S., Bosch K., van Veen H., Reits E., Mimicking proteasomal release of polyglutamine peptides initiates aggregation and toxicity Journal of Cell Science 2009 122 18 3262 3271
43. Gillis J. M., Benckhuijsen W., van Veen H., Sanz A. S., Drijfhout J. W., Reits E. A., Aminopeptidase-resistant peptides are targeted to lysosomes and subsequently degraded Traffic 2011 12 12 1897 1910
44. Kabeya Y., Mizushima N., Yamamoto A., Oshitani-Okamoto S., Ohsumi Y., Yoshimori T., LC3, GABARAP and GATE16 localize to autophagosomal membrane depending on form-II formation Journal of Cell Science 2004 117 13 2805 2812 (Pubitemid 38997262)
45. Weidberg H., Shpilka T., Shvets E., Abada A., Shimron F., Elazar Z., LC3 and GATE-16 N termini mediate membrane fusion processes required for autophagosome biogenesis Developmental Cell 2011 20 4 444 454
46. Sahu R., Kaushik S., Clement C. C., Cannizzo E. S., Scharf B., Follenzi A., Potolicchio I., Nieves E., Cuervo A. M., Santambrogio L., Microautophagy of cytosolic proteins by late endosomes Developmental Cell 2011 20 1 131 139
47. Marzella L., Ahlberg J., Glaumann H., Autophagy, heterophagy, microautophagy and crinophagy as the means for intracellular degradation Virchows Archiv Abteilung B Cell Pathology 1981 36 2-3 219 234 (Pubitemid 11117063)
48. Katayama H., Yamamoto A., Mizushima N., Yoshimori T., Miyawaki A., GFP-like proteins stably accumulate in lysosomes Cell Structure and Function 2008 33 1 1 12 (Pubitemid 351860896)
49. Nishida Y., Arakawa S., Fujitani K., Yamaguchi H., Mizuta T., Kanaseki T., Komatsu M., Otsu K., Tsujimoto Y., Shimizu S., Discovery of Atg5/Atg7-independent alternative macroautophagy Nature 2009 461 7264 654 658
50. Scarlatti F., Maffei R., Beau I., Codogno P., Ghidoni R., Role of non-canonical Beclin 1-independent autophagy in cell death induced by resveratrol in human breast cancer cells Cell Death and Differentiation 2008 15 8 1318 1329 (Pubitemid 351984760)
51. Grishchuk Y., Ginet V., Truttmann A. C., Clarke P. G., Puyal J., Beclin 1-independent autophagy contributes to apoptosis in cortical neurons Autophagy 2011 7 10 1115 1131
52. Seo G., Kim S. K., Byun Y. J., Oh E., Jeong S. W., Chae G. T., Lee S. B., Hydrogen peroxide induces Beclin 1-independent autophagic cell death by suppressing the mTOR pathway via promoting the ubiquitination and degradation of Rheb in GSH-depleted RAW 264.7 cells Free Radical Research 2011 45 4 389 399
53. Zhu J. H., Horbinski C., Guo F., Watkins S., Uchiyama Y., Chu C. T., Regulation of autophagy by extracellular signal-regulated protein kinases during 1-methyl-4-phenylpyridinium-induced cell death American Journal of Pathology 2007 170 1 75 86 (Pubitemid 47339191)
54. Mauthe M., Jacob A., Freiberger S., Hentschel K., Stierhof Y. D., Codogno P., Proikas-Cezanne T., Resveratrol-mediated autophagy requires WIPI-1-regulated LC3 lipidation in the absence of induced phagophore formation Autophagy 2011 7 12 1448 1461
55. Smith D. M., Patel S., Raffoul F., Haller E., Mills G. B., Nanjundan M., Arsenic trioxide induces a beclin-1-independent autophagic pathway via modulation of SnoN/SkiL expression in ovarian carcinoma cells Cell Death and Differentiation 2010 17 12 1867 1881
56. Kondo Y., Kanzawa T., Sawaya R., Kondo S., The role of autophagy in cancer development and response to therapy Nature Reviews Cancer 2005 5 9 726 734 (Pubitemid 41486365)
57. Liang X. H., Jackson S., Seaman M., Brown K., Kempkes B., Hibshoosh H., Levine B., Induction of autophagy and inhibition of tumorigenesis by beclin 1 Nature 1999 402 6762 672 676 (Pubitemid 129516338)
58. Arsov I., Adebayo A., Kucerova-Levisohn M., Haye J., MacNeil M., Papavasiliou F. N., Yue Z., Ortiz B. D., A role for autophagic protein Beclin 1 early in lymphocyte development Journal of Immunology 2011 186 4 2201 2209
59. Codogno P., Mehrpour M., Proikas-Cezanne T., Canonical and non-canonical autophagy: variations on a common theme of self-eating? Nature Reviews Molecular Cell Biology 2011 13 7 12
60. Hailey D. W., Rambold A. S., Satpute-Krishnan P., Mitra K., Sougrat R., Kim P. K., Lippincott-Schwartz J., Mitochondria supply membranes for autophagosome biogenesis during starvation Cell 2010 141 4 656 667
61. Ravikumar B., Moreau K., Jahreiss L., Puri C., Rubinsztein D. C., Plasma membrane contributes to the formation of pre-autophagosomal structures Nature Cell Biology 2010 12 8 747 757
62. Araki N., Takashima Y., Makita T., Redistribution and fate of colchicine-induced alkaline phosphatase in rat hepatocytes: possible formation of autophagosomes whose membrane is derived from excess plasma membrane Histochemistry and Cell Biology 1995 104 4 257 265
63. Ueno T., Muno D., Kominami E., Membrane markers of endoplasmic reticulum preserved in autophagic vacuolar membranes isolated from leupeptin-administered rat liver Journal of Biological Chemistry 1991 266 28 18995 18999 (Pubitemid 21908181)
64. Yamamoto A., Masaki R., Tashiro Y., Characterization of the isolation membranes and the limiting membranes of autophagosomes in rat hepatocytes by lectin cytochemistry Journal of Histochemistry and Cytochemistry 1990 38 4 573 580 (Pubitemid 20106508)
65. Scherz-Shouval R., Shvets E., Fass E., Shorer H., Gil L., Elazar Z., Reactive oxygen species are essential for autophagy and specifically regulate the activity of Atg4 The EMBO Journal 2007 26 7 1749 1760 (Pubitemid 46624042)
66. Eskelinen E. L., Reggiori F., Baba M., Kovacs A. L., Seglen P. O., Seeing is believing: the impact of electron microscopy on autophagy research Autophagy 2011 7 9 935 956
67. Simonsen A., Tooze S. A., Coordination of membrane events during autophagy by multiple class III PI3-kinase complexes Journal of Cell Biology 2009 186 6 773 782
68. Kovcs A. L., Plfia Z., Réz G., Vellai T., Kovcs J., Sequestration revisited: integrating traditional electron microscopy, de novo assembly and new results Autophagy 2007 3 6 655 662 (Pubitemid 350064220)
69. Mari M., Reggiori F., Atg9 reservoirs, a new organelle of the yeast endomembrane system? Autophagy 2010 6 8 1221 1223
70. Mari M., Griffith J., Rieter E., Krishnappa L., Klionsky D. J., Reggiori F., An Atg9-containing compartment that functions in the early steps of autophagosome biogenesis Journal of Cell Biology 2010 190 6 1005 1022
71. Mijaljica D., Prescott M., Devenish R. J., Endoplasmic reticulum and golgi complex: contributions to, and turnover by, autophagy Traffic 2006 7 12 1590 1595 (Pubitemid 44742361)
72. Mari M., Tooze S. A., Reggiori F., The puzzling origin of the autophagosomal membrane F1000 Biology Reports 2011 3 1, article 25
73. Dunn W. A. Jr. , Studies on the mechanisms of autophagy: formation of the autophagic vacuole Journal of Cell Biology 1990 110 6 1923 1933
74. Hayashi-Nishino M., Fujita N., Noda T., Yamaguchi A., Yoshimori T., Yamamoto A., A subdomain of the endoplasmic reticulum forms a cradle for autophagosome formation Nature Cell Biology 2009 11 12 1433 1437
75. Yl-Anttila P., Vihinen H., Jokitalo E., Eskelinen E. L., 3D tomography reveals connections between the phagophore and endoplasmic reticulum Autophagy 2009 5 8 1180 1185
76. Axe E. L., Walker S. A., Manifava M., Chandra P., Roderick H. L., Habermann A., Griffiths G., Ktistakis N. T., Autophagosome formation from membrane compartments enriched in phosphatidylinositol 3-phosphate and dynamically connected to the endoplasmic reticulum Journal of Cell Biology 2008 182 4 685 701
77. Lu Q., Yang P., Huang X., The WD40 repeat PtdIns(3)P-binding protein EPG-6 regulates progression of omegasomes to autophagosomes Developmental Cell 2011 21 2 343 357
78. Matsunaga K., Morita E., Saitoh T., Akira S., Ktistakis N. T., Izumi T., Noda T., Yoshimori T., Autophagy requires endoplasmic reticulum targeting of the PI3-kinase complex via Atg14L Journal of Cell Biology 2010 190 4 511 521
79. Polson H. E. J., De Lartigue J., Rigden D. J., Reedijk M., Urbé S., Clague M. J., Tooze S. A., Mammalian Atg18 (WIPI2) localizes to omegasome-anchored phagophores and positively regulates LC3 lipidation Autophagy 2010 6 4 506 522