-
1
-
-
33746310315
-
Alzheimer's disease
-
Blennow, K., de Leon, M. J., and Zetterberg, H. (2006) Alzheimer's disease Lancet 368, 387-403
-
(2006)
Lancet
, vol.368
, pp. 387-403
-
-
Blennow, K.1
De Leon, M.J.2
Zetterberg, H.3
-
2
-
-
33746377894
-
Protein misfolding, functional amyloid, and human disease
-
Chiti, F. and Dobson, C. M. (2006) Protein misfolding, functional amyloid, and human disease Annu. Rev. Biochem. 75, 333-366
-
(2006)
Annu. Rev. Biochem.
, vol.75
, pp. 333-366
-
-
Chiti, F.1
Dobson, C.M.2
-
3
-
-
79957527414
-
Polymorphism of amyloid β peptide in different environments: Implications for membrane insertion and pore formation
-
Arce, F. T., Jang, H., Ramachandran, S., Landon, P. B., Nussinov, R., and Lal, R. (2011) Polymorphism of amyloid β peptide in different environments: Implications for membrane insertion and pore formation Soft Matter 7, 5267-5273
-
(2011)
Soft Matter
, vol.7
, pp. 5267-5273
-
-
Arce, F.T.1
Jang, H.2
Ramachandran, S.3
Landon, P.B.4
Nussinov, R.5
Lal, R.6
-
4
-
-
77955312210
-
Amyloidogenic protein-membrane interactions: Mechanistic insight from model systems
-
Butterfield, S. M. and Lashuel, H. A. (2010) Amyloidogenic protein-membrane interactions: Mechanistic insight from model systems Angew. Chem. 49, 5628-5654
-
(2010)
Angew. Chem.
, vol.49
, pp. 5628-5654
-
-
Butterfield, S.M.1
Lashuel, H.A.2
-
5
-
-
0031444010
-
Atomic force microscopic imaging of seeded fibril formation and fibril branching by the Alzheimer's disease amyloid-β protein
-
Harper, J. D., Lieber, C. M., and Lansbury, P. T., Jr. (1997) Atomic force microscopic imaging of seeded fibril formation and fibril branching by the Alzheimer's disease amyloid-β protein Chem. Biol. 4, 951-959
-
(1997)
Chem. Biol.
, vol.4
, pp. 951-959
-
-
Harper, J.D.1
Lieber, C.M.2
Lansbury, Jr.P.T.3
-
6
-
-
0033539659
-
Monitoring the assembly of Ig light-chain amyloid fibrils by atomic force microscopy
-
Ionescu-Zanetti, C., Khurana, R., Gillespie, J. R., Petrick, J. S., Trabachino, L. C., Minert, L. J., Carter, S. A., and Fink, A. L. (1999) Monitoring the assembly of Ig light-chain amyloid fibrils by atomic force microscopy Proc. Natl. Acad. Sci. U.S.A. 96, 13175-13179
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 13175-13179
-
-
Ionescu-Zanetti, C.1
Khurana, R.2
Gillespie, J.R.3
Petrick, J.S.4
Trabachino, L.C.5
Minert, L.J.6
Carter, S.A.7
Fink, A.L.8
-
7
-
-
0033849738
-
Review: History of the amyloid fibril
-
Sipe, J. D. and Cohen, A. S. (2000) Review: History of the amyloid fibril J. Struct. Biol. 130, 88-98
-
(2000)
J. Struct. Biol.
, vol.130
, pp. 88-98
-
-
Sipe, J.D.1
Cohen, A.S.2
-
8
-
-
67849106670
-
Amyloid-β protein oligomerization and the importance of tetramers and dodecamers in the aetiology of Alzheimer's disease
-
Bernstein, S. L., Dupuis, N. F., Lazo, N. D., Wyttenbach, T., Condron, M. M., Bitan, G., Teplow, D. B., Shea, J. E., Ruotolo, B. T., Robinson, C. V., and Bowers, M. T. (2009) Amyloid-β protein oligomerization and the importance of tetramers and dodecamers in the aetiology of Alzheimer's disease Nat. Chem. 1, 326-331
-
(2009)
Nat. Chem.
, vol.1
, pp. 326-331
-
-
Bernstein, S.L.1
Dupuis, N.F.2
Lazo, N.D.3
Wyttenbach, T.4
Condron, M.M.5
Bitan, G.6
Teplow, D.B.7
Shea, J.E.8
Ruotolo, B.T.9
Robinson, C.V.10
Bowers, M.T.11
-
9
-
-
23044449398
-
Amyloid ion channels: A common structural link for protein-misfolding disease
-
Quist, A., Doudevski, I., Lin, H., Azimova, R., Ng, D., Frangione, B., Kagan, B., Ghiso, J., and Lal, R. (2005) Amyloid ion channels: A common structural link for protein-misfolding disease Proc. Natl. Acad. Sci. U.S.A. 102, 10427-10432
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 10427-10432
-
-
Quist, A.1
Doudevski, I.2
Lin, H.3
Azimova, R.4
Ng, D.5
Frangione, B.6
Kagan, B.7
Ghiso, J.8
Lal, R.9
-
10
-
-
57649148788
-
Structural classification of toxic amyloid oligomers
-
Glabe, C. G. (2008) Structural classification of toxic amyloid oligomers J. Biol. Chem. 283, 29639-29643
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 29639-29643
-
-
Glabe, C.G.1
-
11
-
-
84855750207
-
2+ imaging implicates Aβ1-42 amyloid pores in Alzheimer's disease pathology
-
2+ imaging implicates Aβ1-42 amyloid pores in Alzheimer's disease pathology J. Cell Biol. 195, 515-524
-
(2011)
J. Cell Biol.
, vol.195
, pp. 515-524
-
-
Demuro, A.1
Smith, M.2
Parker, I.3
-
12
-
-
0035159553
-
Amyloid β protein forms ion channels: Implications for Alzheimer's disease pathophysiology
-
Lin, H. A. I., Bhatia, R., and Lal, R. (2001) Amyloid β protein forms ion channels: Implications for Alzheimer's disease pathophysiology FASEB J. 15, 2433-2444
-
(2001)
FASEB J.
, vol.15
, pp. 2433-2444
-
-
Lin, H.A.I.1
Bhatia, R.2
Lal, R.3
-
13
-
-
0037130174
-
Neurodegenerative disease: Amyloid pores from pathogenic mutations
-
Lashuel, H. A., Hartley, D., Petre, B. M., Walz, T., and Lansbury, P. T., Jr. (2002) Neurodegenerative disease: Amyloid pores from pathogenic mutations Nature 418, 291
-
(2002)
Nature
, vol.418
, pp. 291
-
-
Lashuel, H.A.1
Hartley, D.2
Petre, B.M.3
Walz, T.4
Lansbury, Jr.P.T.5
-
14
-
-
36049008767
-
The amyloid β ion channel hypothesis of Alzheimer's disease
-
Shirwany, N. A., Payette, D., Xie, J., and Guo, Q. (2007) The amyloid β ion channel hypothesis of Alzheimer's disease Neuropsychiatr. Dis. Treat. 3, 597-612
-
(2007)
Neuropsychiatr. Dis. Treat.
, vol.3
, pp. 597-612
-
-
Shirwany, N.A.1
Payette, D.2
Xie, J.3
Guo, Q.4
-
15
-
-
0028982103
-
The toxicity in-vitro of β-amyloid protein
-
Iversen, L. L., Mortishiresmith, R. J., Pollack, S. J., and Shearman, M. S. (1995) The toxicity in-vitro of β-amyloid protein Biochem. J. 311, 1-16
-
(1995)
Biochem. J.
, vol.311
, pp. 1-16
-
-
Iversen, L.L.1
Mortishiresmith, R.J.2
Pollack, S.J.3
Shearman, M.S.4
-
16
-
-
33644940173
-
Mutagenesis of the central hydrophobic cluster in Aβ42 Alzheimer's pepticle: Side-chain properties correlate with aggregation propensities
-
de Groot, N. S., Aviles, F. X., Vendrell, J., and Ventura, S. (2006) Mutagenesis of the central hydrophobic cluster in Aβ42 Alzheimer's pepticle: Side-chain properties correlate with aggregation propensities FEBS J. 273, 658-668
-
(2006)
FEBS J.
, vol.273
, pp. 658-668
-
-
De Groot, N.S.1
Aviles, F.X.2
Vendrell, J.3
Ventura, S.4
-
17
-
-
0028920098
-
Prolines and amyloidogenicity in fragments of the Alzheimer's peptide β/A4
-
Wood, S. J., Wetzel, R., Martin, J. D., and Hurle, M. R. (1995) Prolines and amyloidogenicity in fragments of the Alzheimer's peptide β/A4 Biochemistry 34, 724-730
-
(1995)
Biochemistry
, vol.34
, pp. 724-730
-
-
Wood, S.J.1
Wetzel, R.2
Martin, J.D.3
Hurle, M.R.4
-
18
-
-
1542600164
-
Mapping Aβ amyloid fibril secondary structure using scanning proline mutagenesis
-
Williams, A. D., Portelius, E., Kheterpal, I., Guo, J. T., Cook, K. D., Xu, Y., and Wetzel, R. (2004) Mapping Aβ amyloid fibril secondary structure using scanning proline mutagenesis J. Mol. Biol. 335, 833-842
-
(2004)
J. Mol. Biol.
, vol.335
, pp. 833-842
-
-
Williams, A.D.1
Portelius, E.2
Kheterpal, I.3
Guo, J.T.4
Cook, K.D.5
Xu, Y.6
Wetzel, R.7
-
19
-
-
0030799122
-
Amyloid β-protein fibrillogenesis: Detection of a protofibrillar intermediate
-
Walsh, D. M., Lomakin, A., Benedek, G. B., Condron, M. M., and Teplow, D. B. (1997) Amyloid β-protein fibrillogenesis: Detection of a protofibrillar intermediate J. Biol. Chem. 272, 22364-22372
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 22364-22372
-
-
Walsh, D.M.1
Lomakin, A.2
Benedek, G.B.3
Condron, M.M.4
Teplow, D.B.5
-
20
-
-
13944282886
-
Amyloid β-protein: Monomer structure and early aggregation states of Aβ42 and its Pro(19) alloform
-
Bernstein, S. L., Wyttenbach, T., Baumketner, A., Shea, J. E., Bitan, G., Teplow, D. B., and Bowers, M. T. (2005) Amyloid β-protein: Monomer structure and early aggregation states of Aβ42 and its Pro(19) alloform J. Am. Chem. Soc. 127, 2075-2084
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 2075-2084
-
-
Bernstein, S.L.1
Wyttenbach, T.2
Baumketner, A.3
Shea, J.E.4
Bitan, G.5
Teplow, D.B.6
Bowers, M.T.7
-
21
-
-
0027944284
-
Theoretical models of the ion channel structure of amyloid β-protein
-
Durell, S. R., Guy, H. R., Arispe, N., Rojas, E., and Pollard, H. B. (1994) Theoretical models of the ion channel structure of amyloid β-protein Biophys. J. 67, 2137-2145
-
(1994)
Biophys. J.
, vol.67
, pp. 2137-2145
-
-
Durell, S.R.1
Guy, H.R.2
Arispe, N.3
Rojas, E.4
Pollard, H.B.5
-
22
-
-
1242269712
-
Architecture of the Alzheimer's AβP ion channel pore
-
Arispe, N. (2004) Architecture of the Alzheimer's AβP ion channel pore J. Membr. Biol. 197, 33-48
-
(2004)
J. Membr. Biol.
, vol.197
, pp. 33-48
-
-
Arispe, N.1
-
23
-
-
38949167084
-
New structures help the modeling of toxic amyloid β ion channels
-
Jang, H., Zheng, J., Lal, R., and Nussinov, R. (2008) New structures help the modeling of toxic amyloid β ion channels Trends Biochem. Sci. 33, 91-100
-
(2008)
Trends Biochem. Sci.
, vol.33
, pp. 91-100
-
-
Jang, H.1
Zheng, J.2
Lal, R.3
Nussinov, R.4
-
24
-
-
33644817349
-
Scanning cysteine mutagenesis analysis of Aβ-(1-40) amyloid fibrils
-
Shivaprasad, S. and Wetzel, R. (2006) Scanning cysteine mutagenesis analysis of Aβ-(1-40) amyloid fibrils J. Biol. Chem. 281, 993-1000
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 993-1000
-
-
Shivaprasad, S.1
Wetzel, R.2
-
25
-
-
77950890953
-
Truncated β-amyloid peptide channels provide an alternative mechanism for Alzheimer's disease and Down syndrome
-
Jang, H., Arce, F. T., Ramachandran, S., Capone, R., Azimova, R., Kagan, B. L., Nussinov, R., and Lal, R. (2010) Truncated β-amyloid peptide channels provide an alternative mechanism for Alzheimer's disease and Down syndrome Proc. Natl. Acad. Sci. U.S.A. 107, 6538-6543
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 6538-6543
-
-
Jang, H.1
Arce, F.T.2
Ramachandran, S.3
Capone, R.4
Azimova, R.5
Kagan, B.L.6
Nussinov, R.7
Lal, R.8
-
26
-
-
78649529340
-
β-Barrel topology of Alzheimer's β-amyloid ion channels
-
Jang, H., Arce, F. T., Ramachandran, S., Capone, R., Lal, R., and Nussinov, R. (2010) β-Barrel topology of Alzheimer's β-amyloid ion channels J. Mol. Biol. 404, 917-934
-
(2010)
J. Mol. Biol.
, vol.404
, pp. 917-934
-
-
Jang, H.1
Arce, F.T.2
Ramachandran, S.3
Capone, R.4
Lal, R.5
Nussinov, R.6
-
27
-
-
34548788549
-
Models of β-amyloid ion channels in the membrane suggest that channel formation in the bilayer is a dynamic process
-
Jang, H., Zheng, J., and Nussinov, R. (2007) Models of β-amyloid ion channels in the membrane suggest that channel formation in the bilayer is a dynamic process Biophys. J. 93, 1938-1949
-
(2007)
Biophys. J.
, vol.93
, pp. 1938-1949
-
-
Jang, H.1
Zheng, J.2
Nussinov, R.3
-
28
-
-
84856262919
-
Probing Structural Features of Alzheimer's Amyloid-β Pores in Bilayers Using Site-Specific Amino Acid Substitutions
-
Capone, R., Jang, H., Kotler, S. A., Kagan, B. L., Nussinov, R., and Lal, R. (2012) Probing Structural Features of Alzheimer's Amyloid-β Pores in Bilayers Using Site-Specific Amino Acid Substitutions Biochemistry 51, 776-785
-
(2012)
Biochemistry
, vol.51
, pp. 776-785
-
-
Capone, R.1
Jang, H.2
Kotler, S.A.3
Kagan, B.L.4
Nussinov, R.5
Lal, R.6
-
29
-
-
28444442999
-
3D structure of Alzheimer's amyloid-β(1-42) fibrils
-
Lührs, T., Ritter, C., Adrian, M., Riek-Loher, D., Bohrmann, B., Doeli, H., Schubert, D., and Riek, R. (2005) 3D structure of Alzheimer's amyloid-β(1-42) fibrils Proc. Natl. Acad. Sci. U.S.A. 102, 17342-17347
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 17342-17347
-
-
Lührs, T.1
Ritter, C.2
Adrian, M.3
Riek-Loher, D.4
Bohrmann, B.5
Doeli, H.6
Schubert, D.7
Riek, R.8
-
30
-
-
30744433878
-
Experimental constraints on quaternary structure in Alzheimer's β-amyloid fibrils
-
Petkova, A. T., Yau, W. M., and Tycko, R. (2006) Experimental constraints on quaternary structure in Alzheimer's β-amyloid fibrils Biochemistry 45, 498-512
-
(2006)
Biochemistry
, vol.45
, pp. 498-512
-
-
Petkova, A.T.1
Yau, W.M.2
Tycko, R.3
-
31
-
-
33644867988
-
Structural changes of region 1-16 of the Alzheimer disease amyloid β-peptide upon zinc binding and in vitro aging
-
Zirah, S., Kozin, S. A., Mazur, A. K., Blond, A., Cheminant, M., Segalas-Milazzo, I., Debey, P., and Rebuffat, S. (2006) Structural changes of region 1-16 of the Alzheimer disease amyloid β-peptide upon zinc binding and in vitro aging J. Biol. Chem. 281, 2151-2161
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 2151-2161
-
-
Zirah, S.1
Kozin, S.A.2
Mazur, A.K.3
Blond, A.4
Cheminant, M.5
Segalas-Milazzo, I.6
Debey, P.7
Rebuffat, S.8
-
32
-
-
84858308911
-
All- d -enantiomer of β-amyloid peptide forms ion channels in lipid bilayers
-
Capone, R., Jang, H., Kotler, S. A., Connelly, L., Arce, F. T., Ramachandran, S., Kagan, B. L., Nussinov, R., and Lal, R. (2012) All- d -enantiomer of β-amyloid peptide forms ion channels in lipid bilayers J. Chem. Theory Comput. 8, 1143-1152
-
(2012)
J. Chem. Theory Comput.
, vol.8
, pp. 1143-1152
-
-
Capone, R.1
Jang, H.2
Kotler, S.A.3
Connelly, L.4
Arce, F.T.5
Ramachandran, S.6
Kagan, B.L.7
Nussinov, R.8
Lal, R.9
-
33
-
-
84856298593
-
Atomic force microscopy and MD simulations reveal pore-like structures of all- d -enantiomer of Alzheimer's β-amyloid peptide: Relevance to the ion channel mechanism of AD pathology
-
Connelly, L., Jang, H., Arce, F. T., Capone, R., Kotler, S. A., Ramachandran, S., Kagan, B. L., Nussinov, R., and Lal, R. (2012) Atomic force microscopy and MD simulations reveal pore-like structures of all- d -enantiomer of Alzheimer's β-amyloid peptide: Relevance to the ion channel mechanism of AD pathology J. Phys. Chem. B 116, 1728-1735
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 1728-1735
-
-
Connelly, L.1
Jang, H.2
Arce, F.T.3
Capone, R.4
Kotler, S.A.5
Ramachandran, S.6
Kagan, B.L.7
Nussinov, R.8
Lal, R.9
-
34
-
-
84986512474
-
Charmm: A program for macromolecular energy, minimization, and dynamics calculations
-
Brooks, B. R., Bruccoleri, R. E., Olafson, B. D., States, D. J., Swaminathan, S., and Karplus, M. (1983) Charmm: A program for macromolecular energy, minimization, and dynamics calculations J. Comput. Chem. 4, 187-217
-
(1983)
J. Comput. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
35
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
Phillips, J. C., Braun, R., Wang, W., Gumbart, J., Tajkhorshid, E., Villa, E., Chipot, C., Skeel, R. D., Kale, L., and Schulten, K. (2005) Scalable molecular dynamics with NAMD J. Comput. Chem. 26, 1781-1802
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kale, L.9
Schulten, K.10
-
36
-
-
72549099399
-
Misfolded amyloid ion channels present mobile β-sheet subunits in contrast to conventional ion channels
-
Jang, H., Arce, F. T., Capone, R., Ramachandran, S., Lal, R., and Nussinov, R. (2009) Misfolded amyloid ion channels present mobile β-sheet subunits in contrast to conventional ion channels Biophys. J. 97, 3029-3037
-
(2009)
Biophys. J.
, vol.97
, pp. 3029-3037
-
-
Jang, H.1
Arce, F.T.2
Capone, R.3
Ramachandran, S.4
Lal, R.5
Nussinov, R.6
-
37
-
-
77954949785
-
Structural convergence among diverse, toxic β-sheet ion channels
-
Jang, H., Arce, F. T., Ramachandran, S., Capone, R., Lal, R., and Nussinov, R. (2010) Structural convergence among diverse, toxic β-sheet ion channels J. Phys. Chem. B 114, 9445-9451
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 9445-9451
-
-
Jang, H.1
Arce, F.T.2
Ramachandran, S.3
Capone, R.4
Lal, R.5
Nussinov, R.6
-
38
-
-
0027145628
-
The pore dimensions of gramicidin A
-
Smart, O. S., Goodfellow, J. M., and Wallace, B. A. (1993) The pore dimensions of gramicidin A Biophys. J. 65, 2455-2460
-
(1993)
Biophys. J.
, vol.65
, pp. 2455-2460
-
-
Smart, O.S.1
Goodfellow, J.M.2
Wallace, B.A.3
-
39
-
-
0347987853
-
Folding proteins in fatal ways
-
Selkoe, D. J. (2003) Folding proteins in fatal ways Nature 426, 900-904
-
(2003)
Nature
, vol.426
, pp. 900-904
-
-
Selkoe, D.J.1
-
40
-
-
0347357617
-
Protein folding and misfolding
-
Dobson, C. M. (2003) Protein folding and misfolding Nature 426, 884-890
-
(2003)
Nature
, vol.426
, pp. 884-890
-
-
Dobson, C.M.1
-
41
-
-
0022550027
-
Purification, ultrastructure, and chemical analysis of Alzheimer disease amyloid plaque core protein
-
Roher, A., Wolfe, D., Palutke, M., and KuKuruga, D. (1986) Purification, ultrastructure, and chemical analysis of Alzheimer disease amyloid plaque core protein Proc. Natl. Acad. Sci. U.S.A. 83, 2662-2666
-
(1986)
Proc. Natl. Acad. Sci. U.S.A.
, vol.83
, pp. 2662-2666
-
-
Roher, A.1
Wolfe, D.2
Palutke, M.3
Kukuruga, D.4
-
42
-
-
1842686289
-
-
Elsevier, Kidlington, U.K
-
Cannon, M. J., Williams, A. D., Wetzel, R., and Myszka, D. G. (2004) Kinetic analysis of β-amyloid fibril elongation, Vol. 328, Elsevier, Kidlington, U.K.
-
(2004)
Kinetic Analysis of β-amyloid Fibril Elongation
, vol.328
-
-
Cannon, M.J.1
Williams, A.D.2
Wetzel, R.3
Myszka, D.G.4
-
43
-
-
37849000862
-
Alzheimer's Aβ peptides containing an isostructural backbone mutation afford distinct aggregate morphologies but analogous cytotoxicity. Evidence for a common low-abundance toxic structure(s)?
-
Bieschke, J., Siegel, S. J., Fu, Y., and Kelly, J. W. (2008) Alzheimer's Aβ peptides containing an isostructural backbone mutation afford distinct aggregate morphologies but analogous cytotoxicity. Evidence for a common low-abundance toxic structure(s)? Biochemistry 47, 50-59
-
(2008)
Biochemistry
, vol.47
, pp. 50-59
-
-
Bieschke, J.1
Siegel, S.J.2
Fu, Y.3
Kelly, J.W.4
|