The molecular epidemiology of parasite infections: Tools and applications

Molecular and Biochemical Parasitology

Volumn 181, Issue 2, 2012, Pages 102-116

  Lymbery, A J ^a   Thompson, R C A ^a  

^a MURDOCH UNIVERSITY   (Australia)

Author keywords

Genetic markers; Molecular epidemiology; Parasite identification; Species delimitation; Transmission

Indexed keywords

ARTICLE; ASEXUAL REPRODUCTION; BLOODSTREAM INFECTION; BREEDING; CELL CYCLE; CRYPTOSPORIDIUM; CYTOGENETICS; DISEASE TRANSMISSION; DNA SEQUENCE; ECHINOCOCCUS; FALSE POSITIVE RESULT; GENE AMPLIFICATION; GENE FLOW; GENE FREQUENCY; GENETIC ANALYSIS; GENETIC LINKAGE; GENETIC VARIABILITY; GENOTYPE; GIARDIA; HABITAT FRAGMENTATION; HAPLOTYPE; HELMINTH; HIGH THROUGHPUT SCREENING; HOOKWORM; HOST PARASITE INTERACTION; HOST RANGE; LARVAL STAGE; MACROPARASITE; MICROBIAL POPULATION DYNAMICS; MIXED INFECTION; MOLECULAR EPIDEMIOLOGY; MORTALITY; MULTIPLEX POLYMERASE CHAIN REACTION; NEMATODE LIFE CYCLE STAGE; NONHUMAN; PARASITE CONTROL; PARASITE IDENTIFICATION; PARASITE VIRULENCE; PARASITOSIS; PHENOTYPE; PHYLOGENY; PHYLOGEOGRAPHY; POLYPARASITISM; POPULATION GENETICS; POPULATION STRUCTURE; PRIORITY JOURNAL; PROGENY; PROTOZOON; PUBLIC HEALTH; QUANTITATIVE TRAIT LOCUS; RISK FACTOR; THEORETICAL MODEL; TOXOPLASMA GONDII; WILDLIFE; ZOONOSIS;

ANIMALS; GENETIC MARKERS; GENETIC TECHNIQUES; GENETIC VARIATION; GENETICS, POPULATION; HOST-PARASITE INTERACTIONS; HUMANS; MOLECULAR EPIDEMIOLOGY; PARASITIC DISEASES; PHYLOGENY; SPECIES SPECIFICITY;

EID: 84856208727     PISSN: 01666851     EISSN: 18729428     Source Type: Journal    
DOI: 10.1016/j.molbiopara.2011.10.006     Document Type: Article

References (213)

1. G. Hide, and A. Tait The molecular epidemiology of parasites Experientia 47 1991 128 142 (Pubitemid 21905752)
2. B.R. Levin, M. Lipsitch, and S. Bonhoeffer Population biology, evolution, and infectious disease: convergence and synthesis Science 283 1999 806 809
3. R.M. Anderson, and R.M. May Infectious diseases of humans: dynamics and control 1992 Oxford University Press Oxford
4. E.R. Morgan, E.J. Milner-Gulland, P.R. Porgerson, and G.F. Medley Ruminating on complexity: macroparasites of wildlife and livestock Trends Ecol Evol 19 2004 181 188 (Pubitemid 38355797)
5. S. Cornell Modelling nematode populations: 20 years of progress Trends Parasitol 21 2005 542 545 (Pubitemid 41447029)
6. E.A. Archie, G. Luikart, and V.O. Ezenwa Infecting epidemiology with genetics: a new frontier in disease ecology Trends Ecol Evol 24 2008 21 30
7. M. Tibayrenc Genetic epidemiology of parasitic protozoa and other infectious agents: the need for an integrated approach Int J Parasitol 28 1998 85 104 (Pubitemid 28082062)
8. M. Tibayrenc Beyond strain typing and molecular epidemiology: integrated genetic epidemiology of infectious diseases Parasitol Today 14 1998 323 329 (Pubitemid 28355778)
9. R.C.A. Thompson Molecular epidemiology: applications to problems of infectious disease R.C.A. Thompson, The molecular epidemiology of infectious diseases 2000 Arnold London 1 4
10. C. Sreekumar, D.E. Hill, K.B. Miska, M.C.B. Vianna, L. Yan, and R.L. Myers Genotyping and detection of multiple infections of Toxoplasma gondii using pyrosequencing Int J Parasitol 35 2005 991 999 (Pubitemid 41074076)
11. A. Ahmadian, M. Ehn, and S. Hober Pyrosequencing: history, biochemistry and future Clin Chim Acta 363 2006 83 94 (Pubitemid 41748205)
12. C.R. Stensvold, W. Saijuntha, P. Sithithaworn, S. Wongratanacheewin, H. Strandgaard, and N. Ornbjerg Evaluation of PCR based coprodiagnosis of human opisthorchiasis Acta Trop 97 2006 26 30 (Pubitemid 41758513)
13. C.A. Gordon, D.J. Gray, G.N. Gobert, and D.P. McManus DNA amplification approaches for the diagnosis of key parasitic helminth infections of humans Mol Cell Probes 25 2011 143 152
14. T. Notomi, H. Okayama, T. Masubuchi, K. Yonekawa, N. Watanabe, and N. Amino Loop-mediated isothermal amplification of DNA Nucl Acids Res 28 2000 e63
15. Y. Mori, M. Kitao, N. Tomita, and T. Notomi Real-time turbidimetry of LAMP reaction for quantifying template DNA J Biochem Biophys Methods 59 2004 145 150
16. A. Yano, R. Ishimaru, and R. Hujikata Rapid and sensitive detection of heat-labile I and heat-stable I enterotoxin genes of enterotoxigenic Escherichia coli by loop-mediated isothermal amplification J Microbiol Methods 68 2007 414 420 (Pubitemid 46151782)
17. Z.K. Njiru, A.S.J. Mikosza, T. Armstrong, J.M. Ndungu, and R.C.A. Thompson Loop-mediated isothermal amplification (LAMP) method for rapid detection of Trypanosoma brucei rhodesiense PLoS Negl Trop Dis 2 2008 e147
18. D.M. Groth, and J.D. Wetherall Molecular tools in epidemiological investigations R.C.A. Thompson, The molecular epidemiology of infectious diseases 2000 Arnold London 5 19
19. R.C.A. Thompson, and A.J. Lymbery Genetic variability in parasites and host parasite interactions Parasitology 112 1996 S7 S22
20. P.T. Monis, S. Giglio, A.R. Keegan, and R.C.A. Thompson Emerging technologies for the detection and genetic characterisation of parasites Trends Parasitol 21 2005 340 346 (Pubitemid 40807179)
21. R.C.A. Thompson, C.C. Constantine, and U.M. Morgan Overview and significance of molecular methods: what role for molecular epidemiology? Parasitology 117 1999 S161 S175
22. A.R. Jex, H.V. Smith, P.T. Monis, B.E. Campbell, and R.B. Gasser Cryptosporidium - biotechnological advances in the detection, diagnosis and analysis of genetic variation Biotech Adv 26 2008 304 317
23. S. Siripattanapipong, S. Leelayoova, M. Mungthin, R.C.A. Thompson, P. Boontanom, and W. Saksirisamphant Determination of discriminatory power of genetic markers used for genotyping Giardia duodenalis Southeast Asian J Trop Med Public Health 42 2011 764 771
24. D. Posada, and K.A. Crandall Intraspecific gene genealogies: trees grafting into networks Trends Ecol Evol 16 2001 37 45 (Pubitemid 32102347)
25. P. Sannucks Efficient genetic markers for population biology Trends Ecol Evol 15 2000 199 203
26. D.A. Morrison Networks in phylogenetic analysis: new tools for population biology Int J Parasitol 35 2005 567 582
27. D.H. Huson, and D. Bryant Application of phylogenetic networks in evolutionary studies Mol Biol Evol 23 2006 254 267 (Pubitemid 43100040)
28. H.-J. Bandelt, V. Macauley, and M. Richards Median networks: speedy construction and greedy reduction, one simulation, and two case studies from human mtDNA Mol Phylogenet Evol 16 2000 8 28 (Pubitemid 30466873)
29. D. Bryant, and V. Moulton Neighbour-net: an agglomerative method for the construction of planar phylogenetic networks Lect Notes Comput Sci 2452 2002 375 391
30. V. Makarenkov, and P. Legendre From a phylogenetic tree to a reticulated network J Comput Biol 11 2004 195 212 (Pubitemid 38429371)
31. S. Manel, M.K. Schwartz, G. Luikart, and P. Taberlet Landscape genetics: combining landscape ecology and population genetics Trends Ecol Evol 18 2003 189 197 (Pubitemid 36345738)
32. A. Storfer, M.A. Murphy, S.F. Spear, R. Holdregger, and L.P. Waits Landscape genetics: where are we now? Mol Ecol 19 2010 3496 3514
33. S. Manel, O.E. Gaggiotti, and R.S. Waples Assignment methods: matching biological questions with appropriate techniques Trends Ecol Evol 20 2005 136 142 (Pubitemid 40257094)
34. C.-Y. Ou, C.A. Ciesielski, G. Myers, C.I. Bandea, C.-C. Luo, and B.T.M. Korber Molecular epidemiology of HIV transmission in a dental practice Science 256 1992 1165 1171
35. D.J. Wilson, D. Falush, and G. McVean Germs, genomes and genealogies Trends Ecol Evol 20 2005 39 45 (Pubitemid 40078227)
36. A.R. Templeton Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history Mol Ecol 7 1998 381 397 (Pubitemid 28226687)
37. A.R. Templeton Statistical phylogeography: methods of evaluating and minimizing inference errors Mol Ecol 13 2004 789 809 (Pubitemid 38390587)
38. K.L. Haag, F.J. Ayala, L. Kamenetzky, A.M. Gutierrez, and M. Rosenzvit Livestock trade history, geography, and parasite strains: the mitochondrial genetic structure of Echinococcus granulosus in Argentina J Parasitol 90 2004 234 239 (Pubitemid 38621326)
39. M.A. Beaumont, and M. Panchel On the validity of nested clade phylogeographical analysis Mol Ecol 17 2008 2563 2565 (Pubitemid 351724947)
40. L.L. Knowles Why does a method that fails continue to be used? Evolution 62 2008 2713 2717
41. A.R. Templeton Statistical hypothesis testing in intraspecific phylogeography: nested clade phylogeographical analysis vs. approximate Bayesian computation Mol Ecol 18 2009 319 331
42. B.C. Emerson, E. Paradis, and C. Thebaud Revealing the demographic histories of species using DNA sequences Trends Ecol Evol 16 2001 707 716 (Pubitemid 33082111)
43. R. Nielsen, and M.A. Beaumont Statistical inferences in phylogeography Mol Ecol 18 2009 1034 1047
44. M.A. Beaumont, W.Y. Zhang, and D.J. Balding Approximate Bayesian computation in population genetics Genetics 162 2002 2025 2035 (Pubitemid 36114682)
45. B.T. Grenfell, O.G. Pybus, J.R. Gog, J.L.N. Wood, J.M. Daly, and J.A. Mumford Unifying the epidemiological and evolutionary dynamics of pathogens Science 303 2004 327 332 (Pubitemid 38095764)
46. C.D. Criscione, and M.S. Blouin Effective sizes of macroparasite populations: a conceptual model Trends Parasitol 21 2005 212 217 (Pubitemid 40544637)
47. C.D. Crisione, R. Poulin, and M.S. Blouin Molecular ecology of parasites: elucidating ecological and evolutionary processes Mol Ecol 14 2005 2247 2257 (Pubitemid 40886028)
48. R.C.A. Thompson, and J.V. Conlan Emerging issues and parasite zoonoses in the SE Asian and Australasian region Vet Parasitol 181 2011 69 73
49. R.J. Traub, T. Inpankaew, C. Sutthikornchai, Y. Sukthana, and R.C.A. Thompson PCR-based coprodiagnostic tools reveal dogs as reservoirs of zoonotic ancylostomiasis caused by Ancylostoma ceylanicum in temple communities in Bangkok Vet Parasitol 155 2008 67 73
50. J.V. Conlan, K. Vongxay, S. Fenwick, S. Blacksell, and R.C.A. Thompson Does interspecific competition have a moderating effect on Taenia solium transmission dynamics in Southeast Asia? Trends Parasitol 25 2009 398 403
51. J. Maynard Smith, N.H. Smith, M. O'Rourke, and B.J. Spratt How clonal are bacteria? Proc Natl Acad Sci USA 90 1993 4384 4388 (Pubitemid 23148908)
52. A. MacLeod, A. Tait, and C.M.R. Turner The population genetics of Trypanosoma brucei and the origin of human infectivity Philos Trans R Soc Lond B 356 2001 1035 1044 (Pubitemid 32696248)
53. M. Tibayrenc, F. Kjellberg, and F.J. Ayala A clonal theory of parasitic protozoa: the population structure of Entamoeba, Giardia, Leishmania, Naegleria, Plasmodium, Trichomonas, and Trypanosoma: medical and taxonomical consequences Proc Natl Acad Sci USA 87 1990 2414 2418
54. J. Maynard Smith The detection and measurement of recombination from sequence data Genetics 153 1999 1021 1027 (Pubitemid 29482353)
55. F. Halkett, J.-C. Simon, and F. Balloux Tackling the population genetics of clonal and partially clonal organisms Trends Ecol Evol 20 2005 194 201 (Pubitemid 40359266)
56. M. Tibayrenc, F. Kjellberg, J. Arnaud, B. Oury, S.F. Breniere, and M.-L. Darde Are eukaryotic microorganisms clonal or sexual? A population genetics vantage Proc Natl Acad Sci USA 88 1991 5129 5133
57. M. Tibayrenc, and F.J. Ayala The clonal theory of parasitic protozoa: 12 years on Trends Parasitol 18 2002 405 410
58. A. MacLeod, A. Tweedie, S.C. Welburn, I. Maudlin, C.M.R. Turner, and A. Tait Minisatellite marker analysis of Trypanosoma brucei: reconciliation of clonal, panmictic and epidemic population genetic structures Proc Natl Acad Sci USA 97 2000 13442 13447
59. D.K. Howe, and L.D. Sibley Toxoplasma gondii comprises three clonal lineages: correlation of parasite genotype with human disease J Infect Dis 172 1995 1561 1566
60. D. Ajzenberg, A.L. Banuls, C. Su, A. Dumetre, M. Demar, and B. Carme Genetic diversity, clonality and sexuality in Toxoplasma gondii Int J Parasitol 34 2004 1185 1196 (Pubitemid 39222052)
61. T. Lehmann, P.L. Marcet, D.H. Graham, E.R. Dahl, and J.P. Dubey Globalization and the population structure of Toxoplasma gondii Proc Natl Acad Sci USA 103 2006 11423 11428 (Pubitemid 44156533)
62. N. Parameswaran, R.C.A. Thompson, N. Sundar, S. Pan, M. Johnson, and N.C. Smith Non-archetypal type-II and atypical strains of Toxoplasma gondii infecting marsupials of Australia Int J Parasitol 40 2010 635 640
63. C. Su, D. Evans, R.H. Cole, J.C. Kissinger, J.W. Ajioka, and L.D. Sibley Recent expansion of Toxoplasma through enhanced oral transmission Science 299 2003 414 416 (Pubitemid 36120048)
64. J.M. Wendte, A.K. Gibson, and M.E. Grigg Population genetics of Toxoplasma gondii: new perspectives from parasite genotypes in wildlife Vet Parasitol 182 2011 96 111
65. A. Khan, B. Fux, C. Su, J.P. Dubey, M.L. Darde, and J.W. Ajioka Recent transcontinental sweep of Toxoplasma gondii driven by a single monomorphic chromosome Proc Natl Acad Sci USA 103 2007 11423 11428
66. S.A. Nadler, M.S. Hafner, J.C. Hafner, and D.J. Hafner Genetic differentiation among chewing louse populations (Mallophaga: Trichodectidae) in a pocket gopher contact zone (Rodentia: Geomyidae) Evolution 44 1990 942 951
67. T.J.C. Anderson, M.E. Romero-Abal, and J. Jaenike Mitochondrial DNA and Ascaris microepidemiology: the composition of parasite populations from individula hosts, families and villages Parasitology 110 1995 221 229
68. T.L. Braisher, N.J. Gemmell, B.T. Grenfell, and W. Amos Host isolation and patterns of genetic variability in three populations of Teladorsagia from sheep Int J Parasitol 34 2004 1197 1204 (Pubitemid 39222053)
69. M.S. Blouin, J.B. Dame, C.A. Tarrant, and C.H. Courtney Unusual population genetics of a parasitic nematode: mtDNA varaition within and among populations Evolution 46 1992 470 476
70. M.S. Blouin, J. Liu, and R.E. Berry Life cycle variation and the genetic structure of nematode populations Heredity 83 1999 253 259 (Pubitemid 29498794)
71. S. Paterson, M.C. Fisher, and M.E. Viney Inferring infection processes of a parasitic nematode using population genetics Parasitology 120 2000 185 194 (Pubitemid 30107742)
72. T.J.C. Anderson, B. Haubold, J.F. Williams, J.G. Estrado-Franco, L. Richardson, and R. Mollinedo Microsatellite markers reveal a spectrum of population structures in the malaria parasite Plasmodium falciparum Mol Biol Evol 17 2000 1467 1482
73. M. Mulvey, J.M. Aho, C. Lydeard, P.L. Leberg, and M.H. Smith Comparative population genetic structure of a parasite (Fascioloides magna) and its definitive host Evolution 45 1991 1628 1640
74. F. Prugnolle, H. Liu, T. De Meeus, and F. Balloux Population genetics of complex life-cycle parasites: an illustration with trematodes Int J Parasitol 35 2005 255 263 (Pubitemid 40250209)
75. A. Theron, C. Sire, A. Rognon, F. Prugnolle, and P. Durand Molecular ecology of Schistosoma mansoni transmission inferred from the genetic composition of larval and adult infrapopulations within intermediate and definitive hosts Parasitology 129 2004 571 585 (Pubitemid 39473007)
76. T.P. Wang, J. Shrivastava, M.V. Johansen, S.Q. Zhang, F.F. Wang, and J.P. Webster Does multiple hosts mean multiple parasites? Population genetic structure of Schistosoma japonicum between definitive host species Int J Parasitol 36 2006 1317 1325 (Pubitemid 44353487)
77. M.S. Blouin, C.A. Yowell, C.H. Coutney, and J.B. Dame Host movement and the genetic structure of populations of parasitic nematodes Genetics 141 1995 1007 1014
78. K.D. McCoy, T. Boulinier, C. Tirard, and Y. Michalakis Host-dependent genetic structure of parasite populations: differential dispersal of seabird tick host races Evolution 57 2003 288 296 (Pubitemid 36333339)
79. C.D. Criscione, and M.S. Blouin Life cycles shape parasite evolution: comparative population genetics of salmon trematodes Evolution 58 2004 198 202 (Pubitemid 38355650)
80. A.J. Lymbery, C.C. Constantine, and R.C.A. Thompson Self-fertilization without genomic or population structuring in a parasitic tapeworm Evolution 51 1997 289 294 (Pubitemid 27164685)
81. R.C.A. Thompson Presidential address: rediscovering parasites using molecular tools - towards revising the taxonomy of Echinococcus, Giardia and Cryptosporidium Int J Parasitol 32 2002 493 496 (Pubitemid 34273799)
82. C.G. Clark Entamoeba dispar, an organism reborn Trans R Soc Trop Med Hyg 92 1998 361 364 (Pubitemid 128714121)
83. E. Mayr Animal species and evolution 1963 Harvard University Press Cambridge, MA
84. S.C. Welburn, K. Picozzi, E.M. Fvre, P.G. Coleman, M. Odiit, and M. Carrington Identification of human-infective trypanosomes in animal reservoir of sleeping sickness in Uganda by means of serum-resistance-associated (SRA) gene Lancet 358 2001 2017 2019 (Pubitemid 34084823)
85. W. Gibson, T. Backhouse, and A. Griffiths The human serum resistance associated gene is ubiquitous and conserved in Trypanosoma brucei rhodesiense throughout east Africa Infect Genet Evol 1 2002 207 214 (Pubitemid 34461234)
86. R.L. Mayden A hierarchy of species concepts: the denouement in the saga of the species problem M. Claridge, H.A. Darwah, M.R. Wilson, Species: the units of biodiversity 1997 Chapman and Hall London 381 424
87. J. Hey On the failure of modern species concepts Trends Ecol Evol 21 2006 447 450 (Pubitemid 44066619)
88. W. Kunz When is a parasite species a species? Trends Parasitol 18 2002 121 124 (Pubitemid 34164256)
89. T. de Meeus, P. Durand, and F. Renaud Species concepts: what for? Trends Parasitol 19 2003 425 427 (Pubitemid 38366133)
90. J.W.J. Sites, and J.C. Marshall Operational criteria for delimiting species Ann Rev Ecol Syst 35 2004 199 227 (Pubitemid 40059719)
91. E.O. Wiley The evolutionary species concept reconsidered Syst Biol 27 1978 17 26
92. M.G. Macnish, U.M. Morgan-Ryan, P.T. Monis, J.M. Behnke, and R.C.A. Thompson A molecular phylogeny of nuclear and mitochondrial sequences in Hymenolepis nana (Cestoda) supports the existence of a cryptic species Parasitology 125 2002 567 575 (Pubitemid 36132579)
93. R. Vilas, C.D. Criscione, and M.S. Blouin A comparison between mitochondrial DNA and the ribosomal internal transcribed regions in prospecting for cryptic species of platyhelminth parasites Parasitology 131 2005 839 846 (Pubitemid 41772380)
94. K. de Queiroz, and M.J. Donoghue Phylogenetic systematics or Nelson's version of cladistics? Cladistics 6 1990 61 75
95. R.C.A. Thompson, A.J. Lymbery, and C.C. Constantine Variation in Echinococcus: towards a taxonomic revision of the genus Adv Parasitol 35 1995 145 176
96. M. Nakao, D.P. McManus, P.M. Schantz, P.S. Craig, and A. Ito A molecular phylogeny of the genus Echinococcus inferred from complete mitochondrial genomes Parasitology 134 2007 713 722 (Pubitemid 46841594)
97. L.F. Le Jambre Hybridization studies of Haemonchus contortus (Rudolphi, 1803) and H. placei (Place, 1893) (Nematoda: Trichostrongylidae) Int J Parasitol 9 1979 455 463
98. J.-Y. Chai, D. Murrell, and A.J. Lymbery Fishborne parasitic zoonoses: status and issues Int J Parasitol 35 2005 1233 1254 (Pubitemid 41395181)
99. A.J. Lymbery, and F.Y. Cheah Anisakid nematodes and anisakiasis K.D. Murrell, B. Fried, Food-borne parasitic zoonoses: fish and plant-borne parasites 2007 Springer New York 185 207
100. S. Bensch, J. Perez-Tris, J. Waldenstrom, and O. Hellgren Linkage between nuclear and mitochondrial DNA sequences in avian malaria parasites: multiple cases of cryptic speciation Evolution 58 2004 1617 1621 (Pubitemid 39033469)
101. V. Grillo, F. Jackson, J. Cabaret, and J.S. Gilleard Population genetic analysis of the ovine parasitic nematode Teladorsagia circumcincta and evidence for a cryptic species Int J Parasitol 37 2007 435 447 (Pubitemid 46231225)
102. R.C.A. Thompson Echinocoocus, Giardia, and Cryptosporidium: observational studies challenging accepted dogma Parasitology 136 2009 1529 1535
103. R.C.A. Thompson The taxonomy, phylogeny and transmission of Echinococcus Exp Parasitol 119 2008 439 446
104. P.T. Monis, S.M. Caccio, and R.C.A. Thompson Variation in Giardia: towards a taxonomic revision of the genus Trends Parasitol 25 2009 93 100
105. R.C.A. Thompson, and A.J. Lymbery The nature, extent and significance of variation within the genus Echinococcus Adv Parasitol 27 1988 210 258
106. Hajialilo E, Harandi MF, Sharbatkhori M, Mirhendi H, Rostami S. Genetic characterization of Echinococcus granulosus in livestock from Southeastern Iran indicates the presence of G3 genotype in camel, cattle and sheep. J Helminthol; in press.
107. F.M. Harandi, R.P. Hobbs, P.J. Adams, I. Mobedi, U.M. Morgan-Ryan, and R.C.A. Thompson Molecular and morphological characterisation of Echinococcus granulosus of human and animal origin in Iran Parasitology 125 2002 367 373
108. M. Sharbatkhori, M.F. Harandi, H. Mirhendi, E. Hajialilo, and E.B. Kia Sequence analysis of cox1 and nad1 genes in Echinococcus granulosus G3 genotype in camels (Camelus dromedaries) from central Iran Parasitol Res 108 2011 521 527
109. R.C.A. Thompson, and P.T. Monis Taxonomy of Giardia species H.D. Lujan, S. Svärd, Giardia: a model organism 2011 Springer New York 1 15
110. S. Leonhard, K. Pfister, P. Beelitz, and R.C.A. Thompson The molecular characterisation of Giardia from dogs in southern Germany Vet Parasitol 150 2007 33 38 (Pubitemid 350026684)
111. Thompson RCA. Giardia infections. In: Palmer SR, Soulsby EJL, Torgerson P, Brown D, editors. Zoonoses. Oxford: Oxford University Press; in press.
112. R.J. Traub, P.T. Monis, I.D. Robertson, P.J. Irwin, N. Mencke, and R.C.A. Thompson Epidemiological and molecular evidence supports the zoonotic transmission of Giardia among humans and dogs living in the same community Parasitology 128 2004 253 262 (Pubitemid 38437957)
113. T. Inpankaew, R. Traub, R.C.A. Thompson, and Y. Sukthana Canine parasitic zoonoses in Bangkok temples Southeast Asian J Trop Med Public Health 38 2007 247 255
114. A.L. Salb, W.B. Barkeman, B.T. Elkin, R.C.A. Thompson, D.P. Whiteside, and S.R. Black Parasites in dogs in two northern Canadian communities: implications for human, dog, and wildlife health Emerg Infect Dis 14 2008 60 63
115. R.C.A. Thompson, S.J. Kutz, and A. Smith Parasite zoonoses and wildlife: emerging issues Int J Environ Res Public Health 6 2009 678 693
116. J.A. Teichroeb, S.J. Kutz, U. Parkar, R.C.A. Thompson, and P. Sicotte Ecology of the gastrointestinal parasites of Colobus vellerosus at Boabeng-Fiema, Ghana: possible anthropozoonotic transmission Am J Phys Anthropol 140 2009 498 507
117. A.R. Johnston, T.R. Gillespie, I.B. Rwego, T.L. McLachlan, A.D. Kent, and T.L. Goldberg Molecular epidemiology of cross-species Giardia duodenalis transmission in Western Uganda PLoS Negl Trop Dis 4 2010 e683
118. H. Sprong, S.M. Caccio, and J.W.B. van der Giessen Identification of zoonotic genotypes of Giardia duodenalis PloS Negl Trop Dis 3 2009 e558
119. C. Covacin, D.P. Aucoin, A. Elliot, and R.C.A. Thompson Genotypic characterisation of Giardia from domestic dogs in the USA Vet Parasitol 177 2011 28 32
120. R.C.A. Thompson, and A. Smith Zoonotic enteric protozoa Vet Parasitol 182 2011 70 78
121. P.R. Hunter, and R.C.A. Thompson The zoonotic transmission of Giardia and Cryptosporidium Int J Parasitol 35 2005 1181 1190 (Pubitemid 41395179)
122. H.P. Beck, D. Blake, M.L. Darde, I. Felger, S. Pedraza-Diaz, and J. Regidor-Cerrillo Molecular approaches to diversity of populations of apicomplexan parasites Int J Parasitol 39 2009 175 189
123. M. Mallon, A. MacLeod, J. Wastling, H. Smith, B. Reilly, and A. Tait Population structures and the role of genetic exchange in the zoonotic pathogen Cryptosporidium parvum J Mol Evol 56 2003 407 417 (Pubitemid 36390772)
124. M.M. Peng, M.L. Wilson, R.E. Holland, S.R. Meshnich, A.A. Lal, and L. Xiao Genetic diversity of Cryptosporidium spp. in cattle in Michigan: implications for understanding the transmission dynamics Parasitol Res 90 2003 175 180 (Pubitemid 36819135)
125. J. Slapeta Naming of Cryptosporidium pestis is in accordance with the ICZN Code and the name is available for this taxon previously recognised as C. parvum 'bovine genotype' Vet Parasitol 177 2011 1 5
126. A. Grinberg, N. Lopez-Villalobos, W. Pomroy, G. Widmer, H. Smith, and A. Tait Host-shaped segregation of the Cryptosporidium parvum multilocus genotype repertoire Epidemiol Infect 136 2007 273 278
127. R.M. Chalmers, G. Robinson, K. Elwin, S.J. Hadfield, L. Xiao, and U. Ryan Cryptosporidium sp. rabbit genotype, a newly identified human pathogen Emerg Infect Dis 15 2009 829 830
128. M.J. Nolan, A.R. Jex, S.R. Haydon, M.A. Stevens, and R.B. Gasser Molecular detection of Cryptosporidium cuniculus in rabbits in Australia Infect Genet Evol 10 2010 1179 1187
129. G. Robinson, S. Wright, K. Elwin, S.J. Hadfield, F. Katzer, and P.M. Bartley Re-description of Cryptosporidium cuniculus Inman and Takeuchi, 1979 (Apicomplexa: Cryptosporidiidae): morphology, biology and phylogeny Int J Parasitol 40 2010 1539 1548
130. K.F. Smith, M.D. Behrens, and D.F. Sax Local scale effects of disease on biodiversity EcoHealth 6 2009 287 295
131. K.F. Smith, K. Acevedo-Whitehouse, and A.B. Pedersen The role of infectious diseases in biological conservation Anim Conserv 12 2009 1 12
132. J. Cox-Singh, T.M. Davis, K.S. Lee, S.S. Shamsul, A. Matusop, and S. Ratnam Plasmodium knowlesi malaria in humans is widely distributed and potentially life threatening Clin Infect Dis 46 2008 165 171 (Pubitemid 351269152)
133. K.S. Lee, P.C.S. Divis, S.K. Zakaria, A. Matusop, R.A. Julin, and D.J. Conway Plasmodium knowlesi: reservoir hosts and tracking the emergence in humans and macaques PLoS Pathog 7 2011 e1002015
134. K. Rose, J. Curtis, T. Baldwin, A. Mathis, B. Kumar, and A. Sakthianandeswaren Cutaneous leishmaniasis in red kangaroos: isolation and characterisation of the causative organisms Int J Parasitol 34 2004 655 664 (Pubitemid 38521220)
135. A. Dougall, C. Shilton, J. Low Choy, B. Alexander, and S. Walton New reports of Australian cutaneous leishmaniasis in northern Australian macropods Epidemiol Infect 137 2009 1516 1520
136. A.M. Dougall, B. Alexander, D.C. Holt, T. Harris, A.H. Sultan, and P.A. Bates Evidence incriminating midges (Diptera: Ceratopogonidae) as potential vectors of Leishmania in Australia Int J Parasitol 41 2011 571 579
137. R.C.A. Thompson, A.J. Lymbery, and A. Smith Parasites, emerging disease and wildlife conservation Int J Parasitol 40 2010 1163 1170
138. J. Pickering, and C.A. Norris New evidence concerning the extinction of the endemic murid Rattus macleri from Christmas Island, Indian Ocean Aust Mammal 19 1996 19 25
139. K.B. Wyatt, P.F. Campos, M.T.P. Gilbert, S.-O. Kolokotronis, W.H. Hynes, and R. DeSalle Historical mammal extinction on Christmas Island (Indian Ocean) correlates with introduced infectious disease PLoS One 3 2008 e3602
140. S. Averis, R.C.A. Thompson, A.J. Lymbery, A.F. Wayne, K.D. Morris, and A. Smith The diversity, distribution and host-parasite associations of trypanosomes in Western Australian wildlife Parasitology 136 2009 1269 1279
141. J. Gascon, C. Bern, and M.-J. Pinazo Chagas disease in Spain, the United States and other non-endemic countries Acta Trop 115 2010 22 27
142. G.A. Schmunis, and Z.E. Yadon Chags disease: a Latin American health problem becoming a world health problem Acta Trop 115 2010 14 21
143. N.R. Stoll This wormy world J Parasitol 33 1947 1 15
144. A.A. Buck, R.I. Anderson, and A.A. MacRae Epidemiology of poly-parasitism. I. Occurrence, frequency and distribution of multiple infections in rural communities in Chad, Peru, Afghanistan and Zaire Trop Med Parasitol 29 1978 61 70 (Pubitemid 8304095)
145. A.A. Buck, R.I. Anderson, and A.A. MacRae Epidemiology of poly-parasitism. II. Types of combinations, relative frequency and associations of multiple infections Trop Med Parasitol 29 1978 137 144 (Pubitemid 8362740)
146. A.A. Buck, R.I. Anderson, and A.A. MacRae Epidemiology of poly-parasitism. III. Effects on the diagnostic capacity of immunological tests Trop Med Parasitol 29 1978 145 155 (Pubitemid 8362741)
147. A.A. Buck, R.I. Anderson, and A.A. MacRae Epidemiology of poly-parasitism. IV. Combined effects on the state of health Trop Med Parasitol 29 1978 253 268 (Pubitemid 9020196)
148. G.T. Keusch, and P. Migasena Biological implications of polyparasitism Rev Infect Dis 4 1982 880 882
149. R.J. Payne, L. Turner, and E.R. Morgan Inappropriate measures of population health for parasitic disease? Trends Parasitol 25 2009 393 395
150. F.E.G. Cox Concomitant infections, parasites and immune responses Parasitology 122 2001 S23 S38
151. J. Keiser, E.K. N'Goran, G.H. Singer, C. Lengeler, M. Tanner, and J. Utzinger Association between Schistosoma mansoni and hookworm infections among schoolchildren in Cote d'lvoire Acta Trop 84 2002 31 41 (Pubitemid 35223292)
152. P. Druilhe, A. Tall, and C. Sokhna Worms can worsen malaria: towards a new means to roll back malaria? Trends Parasitol 21 2005 359 362 (Pubitemid 40968136)
153. R. Pullan, and S. Brooker The health impact of polyparasitism in humans: are we under-estimating the burden of parasitic diseases? Parasitology 135 2008 783 794 (Pubitemid 351913470)
154. N. Midzi, D. Sangweme, S. Zinyowera, M.P. Mapingure, K.C. Brouwer, and A. Munatsi The burden of polyparasitism among primary schoolchildren in rural and farming areas in Zimbabwe Trans R Soc Trop Med Hyg 102 2008 1039 1045
155. A. Koukounari, C.A. Donnelly, M. Sacko, A.D. Keita, A. Landoure, and R. Dembele The impact of single versus mixed schistosome species infections on liver, spleen and bladder morbidity within Malian children pre- and post-praziquantel treatment BMC Infect Dis 10 2010 227
156. T. Supali, J.J. Verweij, A.E. Wiria, Y. Djuardi, F. Hamid, and M.M.M. Kaisar Polyparasitism and its impact on the immune system Int J Parasitol 40 2010 1171 1176
157. D.E. Arnot Field epidemiology - the influence of the genetic complexity of Plasmodium falciparum infections on the epidemiology of malaria Trans R Soc Trop Med Hyg 96 2002 S1/131-S1/136
158. L.H. Taylor, M.J. Mackinnon, and A.F. Read Virulence of mixed-clone and single clone infections of the rodent malaria Plasmodium chabaudi Evolution 52 1998 583 589
159. L.C. Pollitt, P. MacGregor, K. Matthews, and S.E. Reece Competition and the evolution of reproductive restraint in malaria parasites Am Nat 177 2011 358 367
160. L.C. Pollitt, N. Mideo, D.R. Drew, P. Schneider, N. Colegrave, and S.E. Reece Malaria and trypanosome transmission: different parasites, same rules? Trends Parasitol 27 2011 197 203
161. M.S. Llewellyn, J.B. Rivett-Carnac, S. Fitzpatrick, M.D. Lewis, M. Yeo, and M.W. Gaunt Extraordinary Trypanosoma cruzi diversity within single mammalian reservoir hosts implies a mechanism of diversifying selection Int J Parasitol 41 2011 609 614
162. W. Apt, I. Zulantay, A. Solari, S. Ortiz, D. Oddo, and G. Corral Vertical transmission of Trypanosoma cruzi in the province of Choapa, IV Region, Chile: preliminary report (2005-2008) Biol Res 43 2010 269 274
163. J.C. Mantilla, G.A. Zafra, A.M. Macedo, and C.I. Gonzales Mixed infection of Trypanosoma cruzi I and II in a Colombian cardiomyopathic patient Hum Pathol 41 2010 610 613
164. J.D. Ramirez, F. Guhl, L.M. Rendon, F. Rosas, J.A. Marin-Neto, and C.A. Morillo Chagas cardiomyopathy manifestations and Trypanosoma cruzi genotypes circulating in chronic chagasic patients PLoS Negl Trop Dis 4 2010 e899
165. A.R. Vago, L.O. Andrade, A.A. Leite, D. d'Avilla, and A. Macedo Genetic characterization of Trypanosoma cruzi directly from tissues of patients with chronic Chagas disease Am J Pathol 156 2000 1805 1809
166. J.M. Burgos, M. Diez, C. Vigliano, M. Bisio, M. Risso, and T. Duffy Molecular identification of Trypanosoma cruzi discrete typing units in end-stage chronic Chagas heart disease and reactivation after heart transplantation Clin Infect Dis 51 2010 485 495
167. A.E. Paniz-Mondolfi, A.M. Perez-Alvarez, O. Reyes-Jaimes, G. Socorro, O. Zerpa, and D. Slova Concurrent Chagas' disease and borderline disseminated cutaneous leishmaniasis: the role of amiodarone as an antitrypanosomatidae drug Ther Clin Risk Manag 4 2008 659 663 (Pubitemid 352037909)
168. J. Gil, R. Cimino, Q.I. Lopez, S. Cajal, N. Acosta, and M. Juarez Reactivity of GST-SAPA antigen of Trypanosoma cruzi against sera from patients with Chagas disease and leishmaniasis Medicina 71 2011 113 119
169. A.K. Gibson, S. Raverty, D.M. Lambourn, J. Huggins, S.L. Magargal, and M.E. Grigg Polyparasitism is associated with increased disease severity in Toxoplasma gondii-infected marine sentinel species PLoS Negl Trop Dis 5 2011 e114
170. O.M. Guerrero, M. Chinchilla, and E. Abrahams Increasing of Toxoplasma gondii (Coccidia, Sarcocystidae) infections by Trypanosoma lewisi (Kinetoplastida, Trypanosomatidae) in white rats Rev Biol Trop 45 1997 877 882 (Pubitemid 127461135)
171. G. Catarinella, M. Chinchilla, O.M. Guerrero, and E. Abrahams Effect of Trypanosoma lewisi (Kinetoplastida: Trypanosomatidae) on the infection of white rats with Toxoplasma gondii (Eucoccidia: Sarcocystidae) oocysts Rev Biol Trop 46 1998 1121 1123 (Pubitemid 128460149)
172. G. Catarinella, M. Chinchilla, O.M. Guerrero, and A. Castro Infection of white rat peritoneal macrophages with Toxoplasma gondii (Coccidia: Sarcocystidae) after Trypanosoma lewisi (Kinetoplastida: Trypanosomatidae) infection Rev Biol Trop 47 1999 483 488 (Pubitemid 129560795)
173. A. Smith, P. Clark, S. Averis, A.J. Lymbery, A.F. Wayne, and K.D. Morris Trypanosomes in a declining species of threatened Australian marsupial, the brush-tailed bettong Bettongia penicillata (Marsupialia: Potoroidae) Parasitology 135 2008 1329 1335
174. R.N. Chunge, P.N. Karumba, N. Nagelkerke, N. Kaleli, M. Wamwea, and N. Mutiso Intestinal parasites in a rural community in Kenya: cross-sectional surveys with emphasis on prevalence, incidence, duration of infection, and polyparasitism East Afr Med J 68 1991 112 123
175. M. Ouattara, K.D. Silue, A.N. N'Guessan, A. Yapi, M. Barbara, and G. Raso Prevalence and polyparasitism of intestinal protozoa and spatial distribution of Entamoeba histolytica, E. dispar and Giardia intestinalis from pupils in the rural zone in Cote d'Ivoire Sante 18 2008 215 222
176. J. Nematian, A. Gholamrezanezhad, and E. Nematian Giardiasis and other intestinal parasitic infections in relation to anthropometric indicators of malnutrition: a large, population-based survey of schoolchildren in Tehran Trop Med Parasitol 102 2008 209 214 (Pubitemid 351767928)
177. P.N. Nguhiu, H.C. Kariuki, J.K. Magambo, G. Kimani, J.K. Mwatha, and E. Muchiri Intestinal polyparasitism in a rural community East Afr Med J 86 2009 272 278
178. N.S.M. Aly, and M.M.M. Mostata Intestinal parasitic infection among children in the Kingdom of Saudi Arabia Aust J Basic Appl Sci 4 2010 4200 4204
179. B.P. Meloni, R.C.A. Thompson, R.M. Hopkins, J.A. Reynoldson, and M. Gracey The prevalence of Giardia and other intestinal parasites in children, dogs and cats from Aboriginal communities in the Kimberley Med J Aust 158 1993 157 159 (Pubitemid 23094579)
180. A.L.T. Goncalves, T.L. Belizario, J.D.B. Pimentel, M.P.A. Penatti, and R.D.S. Pedroso Prevalence of intestinal parasites in preschool children in the region of Uberlandia, State of Minas Gerais, Brazil Trop Med 44 2010 191 193
181. A.E. Ezeamama, J.F. Friedman, R.M. Olveda, L.P. Acosta, J.D. Kurtis, and V. Mor Functional significance of low-intensity polyparasite helminth infections in anemia J Infect Dis 192 2005 2160 2170 (Pubitemid 41779217)
182. M. Rodriguez, L.I. Terrazas, R. Marquez, and R. Bojalil Susceptibility to Trypanosoma cruzi modified by a previous non-related infection Parasite Immunol 21 1999 177 185 (Pubitemid 29158764)
183. A.B. Pedersen, and A. Fenton Emphasizing the ecology in parasite community ecology Trends Ecol Evol 22 2006 133 139 (Pubitemid 46273826)
184. A.L. Graham Ecological rules governing helminth - microparasite coinfection Proc Natl Acad Sci USA 105 2008 566 570 (Pubitemid 351171748)
185. L.J. Wammes, F. Hamid, A.E. Wiria, B. de Gier, E. Sartono, and R.M. Maizels Regulatory T cells in human geohelminth infection suppress immune responses to BCG and Plasmodium falciparum Eur J Immunol 40 2010 437 442
186. S.C.L. Knowles The effect of helminth co-infection on malaria in mice: a meta-analysis Int J Parasitol 41 2011 1041 1051
187. M.R. Tarafder, H. Carabin, S.T. McGarvey, L. Joseph, E. Balolong Jr., and R. Olveda Assessing the impact of misclassification error on an epidemiological association between two helminthic infections PLoS Negl Trop Dis 5 2011 e995
188. W.C. Sorensen, M. Cappello, D. Bell, L.M. DiFedele, and M.A. Brown Poly-helminth infection in East Guatemalan school children J Glob Infect Dis 3 2011 25 31
189. T.E. Wellems, A. Walker-Jonah, and L.J. Panton Genetic mapping of the chloroquine-resistance locus on Plasmodium falciparum chromosome 7 Proc Natl Acad Sci USA 88 1991 3382 3386 (Pubitemid 21916625)
190. M.S.G. Kwa, V.S. Jetty, and M.H. Roos Benzimadazole resistance in Haemonchus contortus is correlated with a conserved mutation at amino acid 200 in β-tubulin isotype 1 Mol Biochem Parasitol 63 1994 299 303 (Pubitemid 24073839)
191. J.K. McKay, and R.G. Latta Adaptive population divergence; markers, QTL and traits Trends Ecol Evol 17 2002 285 291 (Pubitemid 34518298)
192. J. Merilä, and P. Crnokrak Comparison of genetic differentiation at marker loci and quantitative traits J Evol Biol 14 2001 892 903 (Pubitemid 34029797)
193. T. Leinonen, R.B. O'Hara, J.M. Cano, and J. Merilä Comparative studies of quantitative trait and neutral marker divergence: a meta-analysis J Evol Biol 21 2008 1 17 (Pubitemid 350256623)
194. A.J. Lymbery Finding genetic markers for complex phenotypic traits in parasites Int J Parasitol 26 1996 7 17 (Pubitemid 26052019)
195. X. Su, K. Hayton, and T.E. Wellems Genetic linkage and association analyses for trait mapping in Plasmodium falciparum Nat Rev Genet 8 2007 497 506 (Pubitemid 46955213)
196. M.S. Behnke, A. Khan, J.C. Wootton, J.P. Dubey, K. Tang, and L.D. Sibley Virulence differences in Toxoplasma mediated by amplification of a family of polymorphic pseudokinases Proc Natl Acad Sci USA 108 2011 9631 9636
197. S.A. Blandin, R. Wang-Sattler, M. Lamacchia, J. Gagneur, G. Lycett, and Y. Ning Dissecting the genetic basis of resistance to malaria parasites in Anopheles gambiae Science 326 2009 147 150
198. C.S. Carlson, M.A. Eberle, L. Kruglyak, and D.A. Nickerson Mapping complex disease loci in whole-genome association studies Nature 429 2004 446 452 (Pubitemid 38715138)
199. J.N. Hirschhorn, and M.J. Daly Genome-wide association studies for common diseases and complex traits Nat Rev Genet 6 2005 95 108 (Pubitemid 40179532)
200. M.J. Fitzpatrick, Y. Ben-Shahar, H.M. Smid, L.E.M. Vet, G.E. Robinson, and M.B. Sokolowski Candidate genes for behavioural ecology Trends Ecol Evol 20 2005 96 104 (Pubitemid 40118096)
201. P. Hedrick, S. Jain, and L. Holden Multilocus systems in evolution Evol Biol 11 1978 101 184
202. R.G. Latta Differentiation of alleleic frequencies at quantitative trait loci affecting locally adaptive traits Am Nat 151 1998 283 292 (Pubitemid 28153870)
203. L. Wilfert, and P. Schmidt-Hempel The genetic architecture of susceptibility to parasites BMC Evol Biol 8 2008 e187
204. M.T. Ferdig, R.A. Cooper, J. Mu, B. Deng, D.A. Joy, and X. Su Dissecting the loci of low-level quinine resistance in malaria parasites Mol Microbiol 52 2004 985 997 (Pubitemid 38916169)
205. N.H. Barton, and P.D. Keightly Understanding quantitative genetic variation Nat Rev Genet 3 2002 11 21 (Pubitemid 34506600)
206. J.B. Holland Genetic architecture of complex traits in plants Curr Opin Plant Biol 10 2007 156 161 (Pubitemid 46330106)
207. J.K. Kelly Connecting QTLs to the G-matrix of evolutionary quantitative genetics Evolution 63 2009 813 825
208. T.F.C. Mackay The genetic architecture of quantitative traits: lessons from Drosophila Curr Opin Genet Dev 14 2004 253 257
209. T.J.C. Anderson, J.T. Williams, S. Nair, D. Sudimack, M. Barends, and A. Jaidee Inferred relatedness and heritability in malaria parasites Proc R Soc Lond B 277 2010 2531 2540
210. A.F. Read, and S.J. Schrag The evolution of virulence: experimental evidence Parasitol Today 7 1991 296 297 (Pubitemid 121007893)
211. R. Poulin, and C. Combes The concept of virulence: interpretations and implications Parasitol Today 15 1999 474 475 (Pubitemid 29525602)
212. J.P.J. Saeij, J.P. Boyle, S. Coller, S. Taylor, L.D. Sibley, and E.T. Brooke-Powell Polymorphic secreted kinases are key virulence factors in toxoplasmosis Science 314 2006 1780 1783 (Pubitemid 44969090)
213. S. Taylor, A. Barragan, C. Su, B. Fux, S.J. Fentress, and K. Tang A secreted serine-threonine kniase determines virulence in the eukaryotic pathogen Toxoplasma gondii Science 314 2006 1776 1780 (Pubitemid 44969089)