Microsatellite markers reveal a spectrum of population structures in the malaria parasite Plasmodium falciparum

Molecular Biology and Evolution

Volumn 17, Issue 10, 2000, Pages 1467-1482

  Anderson, Timothy J C ^a,b   Haubold, Bernhard ^c   Williams, Jeff T ^b   Estrada Franco, Jose G ^d   Richardson, Lynne ^a   Mollinedo, Rene ^e   Bockarie, Moses ^f   Mokili, John ^g   Mharakurwa, Sungano ^a   French, Neil ^h   Whitworth, Jim ⁱ   Velez, Ivan D ^j   Brockman, Alan H ^k   Nosten, Francois ^k   Ferreira, Marcelo U ^l   Day, Karen P ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b SOUTHWEST FOUNDATION FOR BIOMEDICAL RESEARCH   (United States)

^c MAX PLANCK INSTITUTE FOR CHEMICAL ECOLOGY   (Germany)

^d UNIVERSITY OF MARYLAND   (United States)

^e Ministry of Health   (Bolivia)

^f PAPUA NEW GUINEA INSTITUTE OF MEDICAL RESEARCH   (Papua New Guinea)

^g HENRY M JACKSON FOUNDATION FOR THE ADVANCEMENT OF MILITARY MEDICINE   (United States)

^h LIVERPOOL SCHOOL OF TROPICAL MEDICINE   (United Kingdom)

ⁱ UGANDA VIRUS RESEARCH INSTITUTE   (Uganda)

^j UNIVERSIDAD DE ANTIOQUIA   (Colombia)

^k SHOKLO MALARIA RESEARCH UNIT   (Thailand)

^l UNIVERSITY OF SÃO PAULO   (Brazil)

more..

Author keywords

Heterozygosity; Infinite alleles model; Linkage disequilibrium; Plasmodium falciparum; Population structure; Stepwise mutation model

Indexed keywords

MICROSATELLITE DNA;

ARTICLE; FERTILIZATION; GENE LINKAGE DISEQUILIBRIUM; GENE LOCUS; GENE STRUCTURE; GENETIC RECOMBINATION; GENOTYPE; GEOGRAPHIC DISTRIBUTION; HETEROZYGOSITY; MOLECULAR CLONING; MOLECULAR GENETICS; NONHUMAN; PLASMODIUM FALCIPARUM; POPULATION STRUCTURE;

ANIMALIA; PLASMODIUM FALCIPARUM; PROKARYOTA; PROTOZOA;

EID: 0033795404     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a026247     Document Type: Article

References (65)

1. Plasmodium falciparum: Population genetic analysis by multilocus enzyme electrophoresis and other molecular markers
2. Geographical structure and sequence evolution as inferred from the Plasmodium falciparum S-antigen locus
3. Do malaria parasites mate non-randomly in the mosquito midgut?
4. Twelve microsatellite markers for characterisation of Plasmodium falciparum from finger prick blood samples
5. Complex mutations in a high proportion of microsatellite loci in the protozoan parasite Plasmodium falciparum
6. A clonal Plasmodium falciparum population in an isolated outbreak of malaria in the Republic of Cabo Verde
7. Microsatellite variation and evolution in the Mimulus guttatus species complex with contrasting mating systems
8. Population structure of Plasmodium falciparum in villages with different malaria endemicity in east Africa
9. Random mating in a natural population of the malaria parasite Plasmodium falciparum
10. High resolution of human evolutionary trees with polymorphic microsatellites
11. Intercontinental spread of a genetically distinctive complex of clones of Neisseria meningitidis causing epidemic disease
12. The effect of deleterious mutations on neutral molecular variation
13. Natural selection on polymorphic malaria antigens and the search for a vaccine
14. High recombination rate in natural populations of Plasmodium falciparum
15. Geographical distribution of a variant epitope of Pfs48/45, a Plasmodium falciparum transmission-blocking vaccine candidate
16. On sex ratio and inbreeding in malaria parasite populations
17. Multigenic drug resistance among inbred malaria parasites
18. Microsatellite 'evolution': Directionality or bias?
19. The relative contributions of recombination and mutation to the divergence of clones of Neisseria meningitidis
20. Allelic diversity at the merozoite surface protein-1 (MSP-1) locus in natural Plasmodium falciparum populations: A brief overview
21. Chromosome 2 sequence of the human malaria parasite Plasmodium falciparum
22. Genetic absolute dating based on microsatellites and the origin of modern humans
23. The maintenance of strain structure in populations of recombining infectious agents
24. Antigenic diversity and the transmission dynamics of Plasmodium falciparum
25. A model for the origins and spread of drug-resistant malaria
26. The emergence of drug-resistant malaria
27. Sex, strains and virulence
28. LIAN version 3: A program for detecting linkage disequilibrium in multilocus data
29. Detecting linkage disequilibrium in bacterial populations
30. Hitchhiking: A comparison of linkage and partial selfing
31. Estimation of numbers of malaria clones in blood samples
32. Analytical results concerning linkage disequilibrium in models with genetic transformation and recombination
33. Positive selection and interallelic recombination at the merozoite surface antigen-1 (MSA-1) locus of Plasmodium falciparum
34. Natural selection on Plasmodium surface proteins
35. Severe anaemia in pregnancy: A problem of primigravidae in rural Zaire
36. Mating system, bottlenecks and genetic polymorphism in hermaphroditic animals
37. Genetic characterization of an epidemic of Plasmodium falciparum malaria among Yanomami Amerindians
38. GDA: Software for the analysis of discrete genetic data
39. Distortion of allele frequency distributions provides a test for recent population bottlenecks
40. Epidemic spread of subgroup III of Neisseria meningitidis serogroup A to South Africa in 1996
41. Population bottlenecks and nonequilibrium models in population genetics. II. Number of alleles in a small population that was formed by a recent bottleneck
42. How clonal are bacteria?
43. Estimation of average heterozygosity and genetic distance from a small number of organisms
44. Linkage disequilibrium, gene trees and selfing: An ancestral recombination graph with partial self-fertilization
45. Mating patterns in malaria parasite populations of Papua New Guinea
46. On the theory of partially inbreeding finite populations. I. Partial selfing
47. Gametocyte sex ratios as indirect measures of outcrossing rates in malaria
48. Plasmodium falciparum antigenic diversity: Evidence of clonal population structure
49. Malaria's Eve: Evidence of a recent population bottleneck throughout the world populations of Plasmodium falciparum
50. Intraspecific variation in the population gene diversity and effective population size correlates with the mating system in plants
51. Low mutation rates of microsatellite loci in Drosophila melanogaster
52. Hierarchical analysis of linkage disequilibrium in Rhizobium populations: Evidence for sex?
53. Genetic structure of natural populations of Escherichia coli in wild hosts on different continents
54. A genetic map and recombination parameters of the human malaria parasite Plasmodium falciparum
55. Complex polymorphisms in an ~330kDa protein are linked to Chloroquine-resistant P. falciparum in Southeast Asia and Africa
56. Toward a high-resolution Plasmodium falciparum linkage map: Polymorphic markers from hundreds of simple sequence repeats
57. An RFLP map of the Plasmodium falciparum genome, recombination rates and favored linkage groups in a genetic cross
58. Estimating F-statistics for the analysis of population structure
59. Antimalarial drug resistance: The pace quickens
60. PCR and strain identification in Plasmodium falciparum
61. Plasmodium falciparum: Restricted polymorphism of T cell epitopes of the circumsporozoite protein in Brazil