-
1
-
-
33845722419
-
Factor analysis and AIC
-
Akaike, H. 1987. Factor analysis and AIC. Psychometrika 52, 317-332.
-
(1987)
Psychometrika
, vol.52
, pp. 317-332
-
-
Akaike, H.1
-
2
-
-
0001656793
-
The performance of neighbor-joining methods of phylogenetic reconstruction
-
Atesson, K. 1999. The performance of neighbor-joining methods of phylogenetic reconstruction. Algorithmica 25, 251-278.
-
(1999)
Algorithmica
, vol.25
, pp. 251-278
-
-
Atesson, K.1
-
4
-
-
0026911267
-
Split decomposition: A new and useful approach to phylogenetic analysis of distance data
-
Bandelt, H.-J., and Dress, A.W.M. 1992a. Split decomposition: A new and useful approach to phylogenetic analysis of distance data. Molecular Phylogenetics and Evolution 1, 242-252.
-
(1992)
Molecular Phylogenetics and Evolution
, vol.1
, pp. 242-252
-
-
Bandelt, H.-J.1
Dress, A.W.M.2
-
5
-
-
34047267637
-
A canonical decomposition theory for metrics on a finite set
-
Bandelt, H.-J., and Dress, A.W.M. 1992b. A canonical decomposition theory for metrics on a finite set. Adv. Math. 92, 47-65.
-
(1992)
Adv. Math.
, vol.92
, pp. 47-65
-
-
Bandelt, H.-J.1
Dress, A.W.M.2
-
7
-
-
84957000934
-
NeighborNet: An agglomerative method for the construction of planar phylogenetic networks
-
R. Guigo, D. Gusfield, eds., LNCS 2452, Springer
-
nd Workshop on Algorithms in Bioinformatics, 375-391, LNCS 2452, Springer.
-
(2002)
nd Workshop on Algorithms in Bioinformatics
, pp. 375-391
-
-
Bryant, D.1
Moulton, V.2
-
8
-
-
0031716190
-
Rapid evaluation of least-squares and minimum-evolution criteria on phylogenetic trees
-
Bryant, D., and Waddell, P. 1998. Rapid evaluation of least-squares and minimum-evolution criteria on phylogenetic trees. Mol. Biol. Evol. 15, 1346-1359.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 1346-1359
-
-
Bryant, D.1
Waddell, P.2
-
9
-
-
0001925593
-
A note on metric properties of trees
-
Buneman, P. 1974. A note on metric properties of trees. J. Comb. Theory B. 17, 48-50.
-
(1974)
J. Comb. Theory B.
, vol.17
, pp. 48-50
-
-
Buneman, P.1
-
10
-
-
0033603539
-
Phylogenetic classification and the universal tree
-
Doolittle, W.F. 1999. Phylogenetic classification and the universal tree. Science 284, 2124-2128.
-
(1999)
Science
, vol.284
, pp. 2124-2128
-
-
Doolittle, W.F.1
-
11
-
-
0031084471
-
An alternating least-squares approach to inferring phylogenies from pairwise distances
-
Felsenstein, J. 1997. An alternating least-squares approach to inferring phylogenies from pairwise distances. Syst. Zool. 46, 101-111.
-
(1997)
Syst. Zool.
, vol.46
, pp. 101-111
-
-
Felsenstein, J.1
-
12
-
-
0030807655
-
BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data
-
Gascuel, O. 1997a. BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data. Mol. Biol. Evol. 14, 685-695.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 685-695
-
-
Gascuel, O.1
-
13
-
-
0000194822
-
Concerning the NJ algorithm and its unweighted version, UNJ
-
B. Mirkin, F. R. McMorris, F. Roberts, and A. Rzhetsky, eds., Providence, RI
-
Gascuel, O. 1997b. Concerning the NJ algorithm and its unweighted version, UNJ, in B. Mirkin, F. R. McMorris, F. Roberts, and A. Rzhetsky, eds., Mathematical Hierarchies and Biology, DIMACS Series in Discrete Mathematics and Theoretical Computer Science, 149-170, Providence, RI.
-
(1997)
Mathematical Hierarchies and Biology, DIMACS Series in Discrete Mathematics and Theoretical Computer Science
, pp. 149-170
-
-
Gascuel, O.1
-
14
-
-
0034360426
-
Data model and classification by trees: The minimum variance reduction (MVR) method
-
Gascuel, O. 2000. Data model and classification by trees: The minimum variance reduction (MVR) method. J. Classification 17, 67-99.
-
(2000)
J. Classification
, vol.17
, pp. 67-99
-
-
Gascuel, O.1
-
15
-
-
0036221747
-
Efficient biased estimation of evolutionary distances when substitution rates vary across sites
-
Guindon, S., and Gascuel, O. 2002. Efficient biased estimation of evolutionary distances when substitution rates vary across sites. Mol. Biol. Evol. 19, 534-543.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 534-543
-
-
Guindon, S.1
Gascuel, O.2
-
17
-
-
0027471670
-
A heuristic method to reconstruct the history of sequences subject to recombination
-
Hein, J. 1993. A heuristic method to reconstruct the history of sequences subject to recombination. J. Mol. Evol. 36, 396-405.
-
(1993)
J. Mol. Evol.
, vol.36
, pp. 396-405
-
-
Hein, J.1
-
18
-
-
0031678692
-
SplitsTree: A program for analyzing and visualizing evolutionary data
-
Huson, D.H. 1998. SplitsTree: A program for analyzing and visualizing evolutionary data. Bioinformatics 141, 68-73.
-
(1998)
Bioinformatics
, vol.141
, pp. 68-73
-
-
Huson, D.H.1
-
19
-
-
0000732090
-
Evolution of protein molecules
-
H.N. Munro, ed., Academic Press, New York
-
Jukes, T.H., and Cantor, C.R. 1969. Evolution of protein molecules, in H.N. Munro, ed., Mammalian Protein Metabolism, 21-132, Academic Press, New York.
-
(1969)
Mammalian Protein Metabolism
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
20
-
-
0001464973
-
Estimation of evolutionary distances between homologous nucleotide sequences
-
Kimura, M. 1981. Estimation of evolutionary distances between homologous nucleotide sequences. Proc. Natl. Acad. Sci. USA 78, 454-458.
-
(1981)
Proc. Natl. Acad. Sci. USA
, vol.78
, pp. 454-458
-
-
Kimura, M.1
-
21
-
-
0028177080
-
A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates
-
Kuhner, M.K., and Felsenstein, J. 1994. A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates. Mol. Biol. Evol. 11, 459-468.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 459-468
-
-
Kuhner, M.K.1
Felsenstein, J.2
-
22
-
-
0034340178
-
Biological applications of reticulation analysis
-
Legendre, P. 2000. Biological applications of reticulation analysis. J. Classification 17, 153-157.
-
(2000)
J. Classification
, vol.17
, pp. 153-157
-
-
Legendre, P.1
-
23
-
-
0036554652
-
Reconstruction of biogeographic and evolutionary networks using reticulograms
-
Legendre, P., and Makarenkov, V. 2002. Reconstruction of biogeographic and evolutionary networks using reticulograms. Syst. Biol. 51, 199-216.
-
(2002)
Syst. Biol.
, vol.51
, pp. 199-216
-
-
Legendre, P.1
Makarenkov, V.2
-
25
-
-
0001844743
-
Is Prochlorothrix hollandica the best choice as a prokaryotic model for higher plant chl-a/b photosynthesis?
-
Lockhart, P.J., Penny, D., Hendy, M.D., and Lakrum, A.W.D. 1993. Is Prochlorothrix hollandica the best choice as a prokaryotic model for higher plant chl-a/b photosynthesis? Photosynthesis Res. 73, 61-68.
-
(1993)
Photosynthesis Res.
, vol.73
, pp. 61-68
-
-
Lockhart, P.J.1
Penny, D.2
Hendy, M.D.3
Lakrum, A.W.D.4
-
26
-
-
0028361182
-
Recovering evolutionary trees under a more realistic model of sequence evolution
-
Lockhart, P.J., Steel, M.A., Hendy, M.D., and Penny, D. 1994. Recovering evolutionary trees under a more realistic model of sequence evolution. Mol. Biol. Evol. 11, 605-612.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 605-612
-
-
Lockhart, P.J.1
Steel, M.A.2
Hendy, M.D.3
Penny, D.4
-
27
-
-
0034894308
-
T-Rex: Reconstructing and visualizing phylogenetic trees and reticulation networks
-
Makarenkov, V. 2001. T-Rex: Reconstructing and visualizing phylogenetic trees and reticulation networks. Bioinformatics 17, 664-668.
-
(2001)
Bioinformatics
, vol.17
, pp. 664-668
-
-
Makarenkov, V.1
-
28
-
-
0002651223
-
Tree metrics and their circular orders: Some uses for the reconstruction and fitting of phylogenetic trees
-
B. Mirkin, F.R. McMorris, F. Roberts, and A. Rzhetsky, eds., American Mathematical Society, Providence, RI
-
Makarenkov, V., and Leclerc, B. 1997. Tree metrics and their circular orders: Some uses for the reconstruction and fitting of phylogenetic trees, in B. Mirkin, F.R. McMorris, F. Roberts, and A. Rzhetsky, eds., Mathematical Hierarchies and Biology, DIMACS Series in Discrete Mathematics and Theoretical Computer Science, 183-208, American Mathematical Society, Providence, RI.
-
(1997)
Mathematical Hierarchies and Biology, DIMACS Series in Discrete Mathematics and Theoretical Computer Science
, pp. 183-208
-
-
Makarenkov, V.1
Leclerc, B.2
-
29
-
-
0033243629
-
An algorithm for the fitting of an additive distance according to a weighted least-squares criterion
-
Makarenkov, V., and Leclerc, B. 1999. An algorithm for the fitting of an additive distance according to a weighted least-squares criterion. J. Classification 16, 3-27.
-
(1999)
J. Classification
, vol.16
, pp. 3-27
-
-
Makarenkov, V.1
Leclerc, B.2
-
30
-
-
0034527590
-
Comparison of additive trees using circular orders
-
Makarenkov, V., and Leclerc, B. 2000. Comparison of additive trees using circular orders. J. Comp. Biol. 7, 731-744.
-
(2000)
J. Comp. Biol.
, vol.7
, pp. 731-744
-
-
Makarenkov, V.1
Leclerc, B.2
-
32
-
-
0001647276
-
Hybridization and phylogenetics
-
P.C. Hoch and A.G. Stephenson, eds., Monographs in Systematic Botany from the Missouri Botanical Garden
-
McDade, L. 1995. Hybridization and phylogenetics, in P.C. Hoch and A.G. Stephenson, eds., Experimental and Molecular Approaches to Plant Biosystematics, 305-331, Monographs in Systematic Botany from the Missouri Botanical Garden.
-
(1995)
Experimental and Molecular Approaches to Plant Biosystematics
, pp. 305-331
-
-
McDade, L.1
-
33
-
-
0042629743
-
Towards the development of computational tools for evaluating phylogenetic network reconstruction methods
-
Nakhleh, L., Sun, J., Warnow, T., Linder, R., Moret, B.M.E., and Tholse, A. 2003. Towards the development of computational tools for evaluating phylogenetic network reconstruction methods. Proc. 8th Pac. Symp. on Biocomputing, 315-326.
-
(2003)
Proc. 8th Pac. Symp. on Biocomputing
, pp. 315-326
-
-
Nakhleh, L.1
Sun, J.2
Warnow, T.3
Linder, R.4
Moret, B.M.E.5
Tholse, A.6
-
34
-
-
84952380109
-
What can molecular and morphological markers tell us about plant hybridization?
-
Rieseberg, L.H., and Ellstrand, N.C. 1993. What can molecular and morphological markers tell us about plant hybridization? Crit. Rev. Plant Sci. 12, 213-241.
-
(1993)
Crit. Rev. Plant Sci.
, vol.12
, pp. 213-241
-
-
Rieseberg, L.H.1
Ellstrand, N.C.2
-
35
-
-
0001576586
-
Character expression, phylogenetic reconstruction, and the detection of reticulate evolution
-
P.C. Hoch and A.G. Stephenson, eds., Monographs in Systematic Botany from the Missouri Botanical Garden
-
Rieseberg, L.H., and Morefield, J.D. 1995. Character expression, phylogenetic reconstruction, and the detection of reticulate evolution, in P.C. Hoch and A.G. Stephenson, eds., Experimental and Molecular Approaches to Plant Biosystematics, 333-353, Monographs in Systematic Botany from the Missouri Botanical Garden.
-
(1995)
Experimental and Molecular Approaches to Plant Biosystematics
, pp. 333-353
-
-
Rieseberg, L.H.1
Morefield, J.D.2
-
36
-
-
0018015137
-
Modeling by shortest data description
-
Rissanen, J. 1978. Modeling by shortest data description, Automatica 14, 465-471.
-
(1978)
Automatica
, vol.14
, pp. 465-471
-
-
Rissanen, J.1
-
37
-
-
0019424782
-
Comparison of phylogenetic trees
-
Robinson, D.R., and Foulds, L.R. 1981. Comparison of phylogenetic trees. Math. Biosci. 53, 131-147.
-
(1981)
Math. Biosci.
, vol.53
, pp. 131-147
-
-
Robinson, D.R.1
Foulds, L.R.2
-
38
-
-
0035139147
-
Intraspecific phylogenetics: Trees grafting into networks
-
Posada, D., and Crandall, K.A. 2001. Intraspecific phylogenetics: Trees grafting into networks. Trends Ecol. Evol. 16, 37-45.
-
(2001)
Trends Ecol. Evol.
, vol.16
, pp. 37-45
-
-
Posada, D.1
Crandall, K.A.2
-
39
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N., and Nei, M. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
40
-
-
0000491446
-
Phylogenetic similarity trees
-
Sattath, S., and Tversky, A. 1977. Phylogenetic similarity trees. Psychometrika 42, 319-345.
-
(1977)
Psychometrika
, vol.42
, pp. 319-345
-
-
Sattath, S.1
Tversky, A.2
-
41
-
-
0024356449
-
Statistical tests for detecting gene conversion
-
Sawyer, S. 1989. Statistical tests for detecting gene conversion. Mol. Biol. Evol. 6, 526-536.
-
(1989)
Mol. Biol. Evol.
, vol.6
, pp. 526-536
-
-
Sawyer, S.1
-
42
-
-
0034340175
-
Reticulation inside species boundary
-
Smouse, P.E. 2000. Reticulation inside species boundary. J. Classification 17, 165-173.
-
(2000)
J. Classification
, vol.17
, pp. 165-173
-
-
Smouse, P.E.1
-
43
-
-
0034340216
-
Reticulate evolution in bacteria and other organisms: How can we study it?
-
Sneath, P.H.A. 2000. Reticulate evolution in bacteria and other organisms: How can we study it? J. Classification 17, 159-163.
-
(2000)
J. Classification
, vol.17
, pp. 159-163
-
-
Sneath, P.H.A.1
-
44
-
-
84959849415
-
Detecting evolutionary incompatibilities from protein sequences
-
Sneath, P.H.A., Sackin, M.J., and Ambler, R.P. 1975. Detecting evolutionary incompatibilities from protein sequences. Syst. Zool. 24, 311-332.
-
(1975)
Syst. Zool.
, vol.24
, pp. 311-332
-
-
Sneath, P.H.A.1
Sackin, M.J.2
Ambler, R.P.3
-
45
-
-
43949153645
-
Recovering a tree from the leaf colorations it generates under a Markov model
-
Steel, M.A. 1994. Recovering a tree from the leaf colorations it generates under a Markov model. Appl. Math. Lett. 72, 19-24.
-
(1994)
Appl. Math. Lett.
, vol.72
, pp. 19-24
-
-
Steel, M.A.1
-
46
-
-
0022410317
-
Statistical methods of DNA sequence analysis: Detection of intragenic recombination or gene conversion
-
Stephens, J.C. 1985. Statistical methods of DNA sequence analysis: Detection of intragenic recombination or gene conversion. Mol. Biol. Evol. 2, 539-556.
-
(1985)
Mol. Biol. Evol.
, vol.2
, pp. 539-556
-
-
Stephens, J.C.1
-
47
-
-
0004254464
-
-
Academic Press, San Diego
-
Stevenson, R.J., Bothwell, M.L., and Lowe, R.L. 1996. Algal Ecology, Academic Press, San Diego.
-
(1996)
Algal Ecology
-
-
Stevenson, R.J.1
Bothwell, M.L.2
Lowe, R.L.3
-
48
-
-
0001336205
-
Phylogeny reconstruction
-
D.M. Hill, ed., Sinauer
-
Swofford, D.L., and Olsen, G.L. 1996. Phylogeny reconstruction, in D.M. Hill, ed., Molecular Systematics, 407-514, Sinauer.
-
(1996)
Molecular Systematics
, pp. 407-514
-
-
Swofford, D.L.1
Olsen, G.L.2
|